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Started by upstream project "BIOFORMATS-test-repo" build number 60 originally caused by: Started by upstream project "Trigger" build number 67 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins17187731670885781328.sh + '[' bmp = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_8854_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:22:59,532 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:22:59,534 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:22:59,535 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:59,536 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:59,537 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:22:59,537 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:22:59,538 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:22:59,538 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:59,538 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:59,539 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:22:59,540 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:22:59,540 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:22:59,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:22:59,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:22:59,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:22:59,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:22:59,770 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:22:59,770 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:22:59,770 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:22:59,770 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:22:59,770 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:22:59,772 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:22:59,772 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 234 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-11 01:22:59,781] [main] java.version = 11.0.16 [testng] 01:22:59,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:22:59,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:59,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-11_01-22-59.log] [testng] 01:22:59,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-05-11 01:22:59,833] [main] testng.directory = /data [testng] [2024-05-11 01:22:59,833] [main] testng.configDirectory = /config [testng] [2024-05-11 01:22:59,843] [main] testng.multiplier = 1.0 [testng] [2024-05-11 01:22:59,845] [main] testng.in-memory = false [testng] [2024-05-11 01:22:59,845] [main] testng.allow-missing = false [testng] [2024-05-11 01:22:59,845] [main] user.language = en [testng] [2024-05-11 01:22:59,845] [main] user.country = ${user.country} [testng] [2024-05-11 01:22:59,845] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-11 01:23:00,610] [main] ---------------------------------------- [testng] [2024-05-11 01:23:00,610] [main] Total files: 31 [testng] [2024-05-11 01:23:00,610] [main] Scan time: 0.765 s (24 ms/file) [testng] [2024-05-11 01:23:00,610] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 31 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-11 01:23:02,188] [pool-1-thread-1] Initializing /data/curtis/image2.bmp: [testng] 01:23:02,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:23:02,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:02,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-11_01-23-02.log] [testng] 01:23:02,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@161c3d64 - End of configuration. [testng] [2024-05-11 01:23:02,206] [pool-1-thread-12] Initializing /data/brian/images/DMSOHigh_001.bmp: [testng] 01:23:02,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:23:02,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:02,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-11_01-23-02.log] [testng] 01:23:02,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66b52196 - End of configuration. [testng] [2024-05-11 01:23:02,218] [pool-1-thread-11] Initializing /data/bk/ch_00.bmp: [testng] 01:23:02,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:23:02,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:02,219 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-11_01-23-02.log] [testng] 01:23:02,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30b42796 - End of configuration. [testng] [2024-05-11 01:23:02,229] [pool-1-thread-10] Initializing /data/ticket-12971/foo.bmp: [testng] 01:23:02,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:23:02,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:02,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-11_01-23-02.log] [testng] 01:23:02,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4710547f - End of configuration. [testng] [2024-05-11 01:23:02,237] [pool-1-thread-9] Initializing /data/dennis/kidney_TFl_Three.bmp: [testng] 01:23:02,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:23:02,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:02,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-11_01-23-02.log] [testng] 01:23:02,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ccef99 - End of configuration. [testng] [2024-05-11 01:23:02,247] [pool-1-thread-8] Initializing /data/big-images/6kx6k.bmp: [testng] 01:23:02,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:23:02,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:02,248 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-11_01-23-02.log] [testng] 01:23:02,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@421ed8ac - End of configuration. [testng] [2024-05-11 01:23:02,335] [pool-1-thread-7] Initializing /data/curtis/image1.bmp: [testng] 01:23:02,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:23:02,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:02,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-11_01-23-02.log] [testng] 01:23:02,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@396921b2 - End of configuration. [testng] [2024-05-11 01:23:02,343] [pool-1-thread-6] Initializing /data/brian/images/kidney_TFl_1.bmp: [testng] 01:23:02,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:23:02,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:02,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-11_01-23-02.log] [testng] 01:23:02,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7127d998 - End of configuration. [testng] [2024-05-11 01:23:02,353] [pool-1-thread-5] Initializing /data/dennis/kidney_TFl_Two.bmp: [testng] 01:23:02,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:23:02,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:02,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-11_01-23-02.log] [testng] 01:23:02,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7636b0a7 - End of configuration. [testng] [2024-05-11 01:23:02,362] [pool-1-thread-4] Initializing /data/curtis/image3.bmp: [testng] 01:23:02,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:23:02,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:02,363 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-11_01-23-02.log] [testng] 01:23:02,363 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bc9b65a - End of configuration. [testng] [2024-05-11 01:23:02,370] [pool-1-thread-3] Initializing /data/brian/images/raw_a_rg.tiff: [testng] 01:23:02,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:23:02,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:02,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-11_01-23-02.log] [testng] 01:23:02,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31b0fa79 - End of configuration. [testng] [2024-05-11 01:23:02,404] [pool-1-thread-2] Initializing /data/dennis/kidney_TFl_Four.bmp: [testng] 01:23:02,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:23:02,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:02,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-11_01-23-02.log] [testng] 01:23:02,406 |-INFO in ch.qos.logback.core.sift.SiftProcessor@219fe92a - End of configuration. [testng] [2024-05-11 01:23:04,289] [pool-1-thread-1] Initializing /data/dennis/kidney_TFl_Seven.bmp: [testng] [2024-05-11 01:23:04,294] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_Nine.bmp: [testng] [2024-05-11 01:23:04,301] [pool-1-thread-4] Initializing /data/big-images/8kx8k-grey.bmp: [testng] [2024-05-11 01:23:04,309] [pool-1-thread-6] Initializing /data/brian/images/raw_a_rg.bmp: [testng] [2024-05-11 01:23:04,313] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_One.bmp: [testng] [2024-05-11 01:23:04,319] [pool-1-thread-2] Initializing /data/curtis/image5.bmp: [testng] [2024-05-11 01:23:04,323] [pool-1-thread-9] Initializing /data/dennis/kidney_TFl_Five.bmp: [testng] [2024-05-11 01:23:04,335] [pool-1-thread-5] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp: [testng] [2024-05-11 01:23:04,344] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Six.bmp: [testng] [2024-05-11 01:23:04,351] [pool-1-thread-3] Initializing /data/stephane/holo0908.bmp: [testng] [2024-05-11 01:23:04,358] [pool-1-thread-11] Initializing /data/frank/cell_mask_error.bmp: [testng] [2024-05-11 01:23:04,841] [pool-1-thread-2] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp: [testng] [2024-05-11 01:23:05,254] [pool-1-thread-6] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp: [testng] [2024-05-11 01:23:05,368] [pool-1-thread-10] Initializing /data/curtis/image4.bmp: [testng] [2024-05-11 01:23:05,372] [pool-1-thread-9] Initializing /data/big-images/8kx8k.bmp: [testng] [2024-05-11 01:23:05,433] [pool-1-thread-7] Initializing /data/brian/images/raw_a.bmp: [testng] [2024-05-11 01:23:05,437] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_Eight.bmp: [testng] [2024-05-11 01:23:05,442] [pool-1-thread-12] Initializing /data/brian/images/23srp5dksub.bmp: [testng] [2024-05-11 01:23:05,448] [pool-1-thread-1] Initializing /data/big-images/6kx6k-grey.bmp: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1643, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 38 seconds Finished: SUCCESS