Started by upstream project "BIOFORMATS-test-repo" build number 60 originally caused by: Started by upstream project "Trigger" build number 67 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins15500207893178899734.sh + '[' canon = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_8873_merge_ci -v /uod/idr/repos/curated/canon:/data -v /uod/idr-scratch/merge-ci/curated/canon:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:28:31,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:28:31,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:28:31,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:28:31,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:28:31,824 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:28:31,824 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:28:31,824 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:28:31,825 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:28:31,825 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration. [testng] 01:28:31,826 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point [testng] 01:28:31,826 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 411 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-11 01:28:31,837] [main] java.version = 11.0.16 [testng] 01:28:31,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:28:31,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:32,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-11_01-28-31.log] [testng] 01:28:32,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-05-11 01:28:32,030] [main] testng.directory = /data [testng] [2024-05-11 01:28:32,031] [main] testng.configDirectory = /config [testng] [2024-05-11 01:28:32,078] [main] testng.multiplier = 1.0 [testng] [2024-05-11 01:28:32,079] [main] testng.in-memory = false [testng] [2024-05-11 01:28:32,079] [main] testng.allow-missing = false [testng] [2024-05-11 01:28:32,079] [main] user.language = en [testng] [2024-05-11 01:28:32,080] [main] user.country = ${user.country} [testng] [2024-05-11 01:28:32,080] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-11 01:28:34,004] [main] ---------------------------------------- [testng] [2024-05-11 01:28:34,004] [main] Total files: 13 [testng] [2024-05-11 01:28:34,005] [main] Scan time: 1.924 s (148 ms/file) [testng] [2024-05-11 01:28:34,005] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-11 01:28:38,107] [pool-1-thread-1] Initializing /data/pete/Learning to Fly.JPG: [testng] 01:28:38,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:28:38,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:38,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-11_01-28-38.log] [testng] 01:28:38,110 |-INFO in ch.qos.logback.core.sift.SiftProcessor@409c8637 - End of configuration. [testng] [2024-05-11 01:28:38,544] [pool-1-thread-12] Initializing /data/pete/DNG-JPG.JPG: [testng] 01:28:38,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:28:38,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:38,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-11_01-28-38.log] [testng] 01:28:38,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c7637ff - End of configuration. [testng] [2024-05-11 01:28:38,673] [pool-1-thread-11] Initializing /data/kinor/2013_03_08_0808.CR2: [testng] 01:28:38,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:28:38,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:38,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-11_01-28-38.log] [testng] 01:28:38,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d1eafe1 - End of configuration. [testng] [2024-05-11 01:28:38,890] [pool-1-thread-10] Initializing /data/pete/Raw-THM.THM: [testng] 01:28:38,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:28:38,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:38,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-11_01-28-38.log] [testng] 01:28:38,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33a3493d - End of configuration. [testng] [2024-05-11 01:28:39,187] [pool-1-thread-9] Initializing /data/pete/DNG-THM.THM: [testng] 01:28:39,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:28:39,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:39,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-11_01-28-39.log] [testng] 01:28:39,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30dbc669 - End of configuration. [testng] [2024-05-11 01:28:39,352] [pool-1-thread-8] Initializing /data/pete/DNG-CR2.CR2: [testng] 01:28:39,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:28:39,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:39,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-11_01-28-39.log] [testng] 01:28:39,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50bd3f70 - End of configuration. [testng] [2024-05-11 01:28:39,534] [pool-1-thread-7] Initializing /data/pete/Raw-JPG.JPG: [testng] 01:28:39,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:28:39,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:39,541 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-11_01-28-39.log] [testng] 01:28:39,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a592f6f - End of configuration. [testng] [2024-05-11 01:28:40,155] [pool-1-thread-6] Initializing /data/pete/Raw-CRW.CRW: [testng] 01:28:40,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:28:40,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:40,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-11_01-28-40.log] [testng] 01:28:40,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e248698 - End of configuration. [testng] [2024-05-11 01:28:40,601] [pool-1-thread-5] Initializing /data/pete/DNG-CRW.CRW: [testng] 01:28:40,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:28:40,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:40,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-11_01-28-40.log] [testng] 01:28:40,604 |-INFO in ch.qos.logback.core.sift.SiftProcessor@790a345 - End of configuration. [testng] [2024-05-11 01:28:40,693] [pool-1-thread-4] Initializing /data/cls/_N5Y0001.CR2: [testng] 01:28:40,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:28:40,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:40,695 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-11_01-28-40.log] [testng] 01:28:40,695 |-INFO in ch.qos.logback.core.sift.SiftProcessor@488f75d4 - End of configuration. [testng] [2024-05-11 01:28:40,767] [pool-1-thread-3] Initializing /data/pete/Raw-CR2.CR2: [testng] 01:28:40,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:28:40,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:40,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-11_01-28-40.log] [testng] 01:28:40,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5854c381 - End of configuration. [testng] [2024-05-11 01:28:41,229] [pool-1-thread-2] Initializing /data/pete/DNG-WAV.WAV: [testng] 01:28:41,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:28:41,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:28:41,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-11_01-28-41.log] [testng] 01:28:41,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e4f9956 - End of configuration. [testng] [2024-05-11 01:28:47,950] [pool-1-thread-4] Initializing /data/pete/Raw-WAV.WAV: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 35 seconds Finished: SUCCESS