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Started by upstream project "BIOFORMATS-test-repo" build number 62 originally caused by: Started by upstream project "Trigger" build number 69 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins8042083801349359830.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_9252_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:13:48,157 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:13:48,159 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:13:48,159 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:13:48,160 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:13:48,161 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:13:48,161 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:13:48,161 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:13:48,161 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:13:48,162 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:13:48,162 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:13:48,162 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:13:48,162 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:13:48,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:13:48,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:13:48,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:13:48,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:13:48,590 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:13:48,591 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:13:48,591 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:13:48,592 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:13:48,592 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:13:48,593 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:13:48,593 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 431 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-13 02:13:48,615] [main] java.version = 1.8.0_342 [testng] 02:13:48,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:13:48,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:48,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-13_02-13-48.log] [testng] 02:13:48,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-13 02:13:48,725] [main] testng.directory = /data [testng] [2024-05-13 02:13:48,725] [main] testng.configDirectory = /config [testng] [2024-05-13 02:13:48,749] [main] testng.multiplier = 1.0 [testng] [2024-05-13 02:13:48,750] [main] testng.in-memory = false [testng] [2024-05-13 02:13:48,750] [main] testng.allow-missing = false [testng] [2024-05-13 02:13:48,750] [main] user.language = fr [testng] [2024-05-13 02:13:48,750] [main] user.country = FR [testng] [2024-05-13 02:13:48,750] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-13 02:13:49,338] [main] ---------------------------------------- [testng] [2024-05-13 02:13:49,339] [main] Total files: 19 [testng] [2024-05-13 02:13:49,339] [main] Scan time: 0.588 s (30 ms/file) [testng] [2024-05-13 02:13:49,339] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-13 02:13:50,946] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 02:13:50,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:13:50,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:50,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-13_02-13-50.log] [testng] 02:13:50,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d35fe1e - End of configuration. [testng] [2024-05-13 02:13:50,987] [pool-1-thread-12] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] 02:13:50,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:13:50,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:50,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-13_02-13-50.log] [testng] 02:13:50,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63fb5fb9 - End of configuration. [testng] [2024-05-13 02:13:51,065] [pool-1-thread-11] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] 02:13:51,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:13:51,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:51,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-13_02-13-51.log] [testng] 02:13:51,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a374297 - End of configuration. [testng] [2024-05-13 02:13:51,084] [pool-1-thread-10] Initializing /data/samples/100R PICT0001.MRW: [testng] 02:13:51,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:13:51,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:51,086 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-13_02-13-51.log] [testng] 02:13:51,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@779f408e - End of configuration. [testng] [2024-05-13 02:13:51,106] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] 02:13:51,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:13:51,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:51,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-13_02-13-51.log] [testng] 02:13:51,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58ed440f - End of configuration. [testng] [2024-05-13 02:13:51,128] [pool-1-thread-8] Initializing /data/samples/200R PICT0002.MRW: [testng] 02:13:51,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:13:51,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:51,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-13_02-13-51.log] [testng] 02:13:51,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@681e74f9 - End of configuration. [testng] [2024-05-13 02:13:51,202] [pool-1-thread-7] Initializing /data/samples/1600R PICT0005.MRW: [testng] 02:13:51,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:13:51,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:51,204 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-13_02-13-51.log] [testng] 02:13:51,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6248d0b5 - End of configuration. [testng] [2024-05-13 02:13:51,240] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] 02:13:51,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:13:51,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:51,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-13_02-13-51.log] [testng] 02:13:51,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3629b908 - End of configuration. [testng] [2024-05-13 02:13:51,267] [pool-1-thread-5] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] 02:13:51,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:13:51,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:51,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-13_02-13-51.log] [testng] 02:13:51,269 |-INFO in ch.qos.logback.core.sift.SiftProcessor@485e6c9e - End of configuration. [testng] [2024-05-13 02:13:51,293] [pool-1-thread-4] Initializing /data/samples/400R PICT0003.MRW: [testng] 02:13:51,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:13:51,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:51,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-13_02-13-51.log] [testng] 02:13:51,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19f7fd02 - End of configuration. [testng] [2024-05-13 02:13:51,328] [pool-1-thread-3] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] 02:13:51,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:13:51,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:51,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-13_02-13-51.log] [testng] 02:13:51,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@559492d1 - End of configuration. [testng] [2024-05-13 02:13:51,564] [pool-1-thread-2] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] 02:13:51,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:13:51,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:51,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-13_02-13-51.log] [testng] 02:13:51,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75c634d8 - End of configuration. [testng] [2024-05-13 02:13:59,414] [pool-1-thread-2] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] [2024-05-13 02:13:59,439] [pool-1-thread-11] Initializing /data/samples/800R PICT0010.MRW: [testng] [2024-05-13 02:13:59,452] [pool-1-thread-1] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] [2024-05-13 02:13:59,469] [pool-1-thread-5] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] [2024-05-13 02:13:59,498] [pool-1-thread-8] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] [2024-05-13 02:13:59,514] [pool-1-thread-12] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] [2024-05-13 02:13:59,539] [pool-1-thread-4] Initializing /data/samples/3200R PICT0006.MRW: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS