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Started by upstream project "BIOFORMATS-test-repo" build number 62 originally caused by: Started by upstream project "Trigger" build number 69 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins13825970210828363178.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_9291_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:38:50,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:38:50,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:38:50,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:38:50,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:38:51,070 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:38:51,070 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:38:51,070 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:38:51,071 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:38:51,071 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:38:51,072 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:38:51,072 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 662 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-13 02:38:51,082] [main] java.version = 1.8.0_342 [testng] 02:38:51,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:38:51,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:51,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-13_02-38-51.log] [testng] 02:38:51,257 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-13 02:38:51,258] [main] testng.directory = /data [testng] [2024-05-13 02:38:51,259] [main] testng.configDirectory = /config [testng] [2024-05-13 02:38:51,271] [main] testng.multiplier = 1.0 [testng] [2024-05-13 02:38:51,271] [main] testng.in-memory = false [testng] [2024-05-13 02:38:51,271] [main] testng.allow-missing = false [testng] [2024-05-13 02:38:51,271] [main] user.language = fr [testng] [2024-05-13 02:38:51,271] [main] user.country = FR [testng] [2024-05-13 02:38:51,272] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-13 02:38:52,845] [main] ---------------------------------------- [testng] [2024-05-13 02:38:52,845] [main] Total files: 32 [testng] [2024-05-13 02:38:52,845] [main] Scan time: 1.573 s (49 ms/file) [testng] [2024-05-13 02:38:52,846] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-13 02:38:56,783] [pool-1-thread-1] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] 02:38:56,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:38:56,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:56,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-13_02-38-56.log] [testng] 02:38:56,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70a13adc - End of configuration. [testng] [2024-05-13 02:38:56,855] [pool-1-thread-12] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] 02:38:56,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:38:56,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:56,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-13_02-38-56.log] [testng] 02:38:56,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27104d59 - End of configuration. [testng] [2024-05-13 02:38:56,938] [pool-1-thread-11] Initializing /data/qa-29459/bad.jpg: [testng] 02:38:56,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:38:56,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:56,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-13_02-38-56.log] [testng] 02:38:56,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54f11df4 - End of configuration. [testng] [2024-05-13 02:38:56,951] [pool-1-thread-10] Initializing /data/keith/PF020328saur v3.1sc: [testng] 02:38:56,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:38:56,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:56,952 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-13_02-38-56.log] [testng] 02:38:56,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f5b09a4 - End of configuration. [testng] [2024-05-13 02:38:56,989] [pool-1-thread-9] Initializing /data/samples/Criterion.1sc: [testng] 02:38:56,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:38:56,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:56,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-13_02-38-56.log] [testng] 02:38:56,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24c1efd0 - End of configuration. [testng] [2024-05-13 02:38:57,024] [pool-1-thread-8] Initializing /data/geert/bad example1.1sc.jpg: [testng] 02:38:57,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:38:57,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:57,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-13_02-38-57.log] [testng] 02:38:57,025 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77a6eac7 - End of configuration. [testng] [2024-05-13 02:38:57,060] [pool-1-thread-7] Initializing /data/geert/bad example1.1sc: [testng] 02:38:57,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:38:57,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:57,061 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-13_02-38-57.log] [testng] 02:38:57,062 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30a8d52a - End of configuration. [testng] [2024-05-13 02:38:57,096] [pool-1-thread-6] Initializing /data/qa-29469/bad2.1sc: [testng] 02:38:57,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:38:57,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:57,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-13_02-38-57.log] [testng] 02:38:57,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cd9a676 - End of configuration. [testng] [2024-05-13 02:38:57,153] [pool-1-thread-5] Initializing /data/david/Opened in imageJ.tiff: [testng] 02:38:57,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:38:57,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:57,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-13_02-38-57.log] [testng] 02:38:57,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72aa6e4c - End of configuration. [testng] [2024-05-13 02:38:57,189] [pool-1-thread-4] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] 02:38:57,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:38:57,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:57,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-13_02-38-57.log] [testng] 02:38:57,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@560a232e - End of configuration. [testng] [2024-05-13 02:38:57,210] [pool-1-thread-3] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] 02:38:57,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:38:57,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:57,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-13_02-38-57.log] [testng] 02:38:57,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@623e664f - End of configuration. [testng] [2024-05-13 02:38:57,230] [pool-1-thread-2] Initializing /data/adrian/test_img.1sc: [testng] 02:38:57,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:38:57,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:57,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-13_02-38-57.log] [testng] 02:38:57,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cdcdcfa - End of configuration. [testng] [2024-05-13 02:38:58,790] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] [2024-05-13 02:38:58,830] [pool-1-thread-3] Initializing /data/samples/imagesEight.1sc: [testng] [2024-05-13 02:38:58,845] [pool-1-thread-10] Initializing /data/qa-29459/bad.1sc: [testng] [2024-05-13 02:38:58,891] [pool-1-thread-5] Initializing /data/geert/bad example1.jpg: [testng] [2024-05-13 02:38:58,923] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2024-05-13 02:38:58,985] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [2024-05-13 02:38:59,048] [pool-1-thread-12] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] [2024-05-13 02:38:59,110] [pool-1-thread-1] Initializing /data/keith/pg020410saur3.1sc: [testng] [2024-05-13 02:38:59,584] [pool-1-thread-9] Initializing /data/qa-29469/bad3.1sc: [testng] [2024-05-13 02:38:59,803] [pool-1-thread-6] Initializing /data/geert/good example1.1sc: [testng] [2024-05-13 02:39:00,013] [pool-1-thread-1] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2024-05-13 02:39:00,073] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2024-05-13 02:39:00,138] [pool-1-thread-7] Initializing /data/keith/test.1sc: [testng] [2024-05-13 02:39:00,206] [pool-1-thread-3] Initializing /data/geert/good example1.1sc.jpg: [testng] [2024-05-13 02:39:00,273] [pool-1-thread-5] Initializing /data/keith/test2.1sc: [testng] [2024-05-13 02:39:00,316] [pool-1-thread-12] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2024-05-13 02:39:00,369] [pool-1-thread-4] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2024-05-13 02:39:00,475] [pool-1-thread-8] Initializing /data/qa-29469/good.1sc: [testng] [2024-05-13 02:39:00,586] [pool-1-thread-11] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2024-05-13 02:39:00,839] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 17 seconds Finished: SUCCESS