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Started by upstream project "BIOFORMATS-test-repo" build number 62 originally caused by: Started by upstream project "Trigger" build number 69 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins6067869324192560062.sh + '[' nikon-jp2 = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_9303_merge_ci -v /uod/idr/repos/curated/nikon-jp2:/data -v /uod/idr-scratch/merge-ci/curated/nikon-jp2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:49:17,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:49:17,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:49:17,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:49:17,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:49:17,223 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:49:17,224 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:49:17,224 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:49:17,224 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:49:17,224 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:49:17,226 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:49:17,226 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 681 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-13 02:49:17,236] [main] java.version = 1.8.0_342 [testng] 02:49:17,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:49:17,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:17,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-13_02-49-17.log] [testng] 02:49:17,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-13 02:49:17,361] [main] testng.directory = /data [testng] [2024-05-13 02:49:17,361] [main] testng.configDirectory = /config [testng] [2024-05-13 02:49:17,505] [main] testng.multiplier = 1.0 [testng] [2024-05-13 02:49:17,505] [main] testng.in-memory = false [testng] [2024-05-13 02:49:17,505] [main] testng.allow-missing = false [testng] [2024-05-13 02:49:17,505] [main] user.language = fr [testng] [2024-05-13 02:49:17,505] [main] user.country = FR [testng] [2024-05-13 02:49:17,506] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-13 02:49:18,372] [main] ---------------------------------------- [testng] [2024-05-13 02:49:18,373] [main] Total files: 11 [testng] [2024-05-13 02:49:18,373] [main] Scan time: 0.866 s (78 ms/file) [testng] [2024-05-13 02:49:18,373] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 11 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-13 02:49:20,292] [pool-1-thread-1] Initializing /data/kira/DapiFitcTexRed008G.tif: [testng] 02:49:20,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:49:20,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:20,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-13_02-49-20.log] [testng] 02:49:20,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@535c4254 - End of configuration. [testng] [2024-05-13 02:49:20,369] [pool-1-thread-11] Initializing /data/kira/DapiFitcTexRed008BGR.tif: [testng] 02:49:20,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:49:20,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:20,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-13_02-49-20.log] [testng] 02:49:20,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38b27865 - End of configuration. [testng] [2024-05-13 02:49:20,463] [pool-1-thread-10] Initializing /data/kira/DapiFitcTexRed006.png: [testng] 02:49:20,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:49:20,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:20,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-13_02-49-20.log] [testng] 02:49:20,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9f912c9 - End of configuration. [testng] [2024-05-13 02:49:20,476] [pool-1-thread-9] Initializing /data/kira/DapiFitcTexRed005.bmp: [testng] 02:49:20,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:49:20,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:20,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-13_02-49-20.log] [testng] 02:49:20,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e2a7d7 - End of configuration. [testng] [2024-05-13 02:49:20,484] [pool-1-thread-8] Initializing /data/kira/DapiFitcTexRed001.jp2: [testng] 02:49:20,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:49:20,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:20,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-13_02-49-20.log] [testng] 02:49:20,486 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3605fe2 - End of configuration. [testng] [2024-05-13 02:49:20,587] [pool-1-thread-7] Initializing /data/kira/DapiFitcTexRed004.tif: [testng] 02:49:20,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:49:20,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:20,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-13_02-49-20.log] [testng] 02:49:20,588 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d497b44 - End of configuration. [testng] [2024-05-13 02:49:20,685] [pool-1-thread-6] Initializing /data/kira/DapiFitcTexRed008B.tif: [testng] 02:49:20,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:49:20,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:20,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-13_02-49-20.log] [testng] 02:49:20,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52837bd5 - End of configuration. [testng] [2024-05-13 02:49:20,754] [pool-1-thread-5] Initializing /data/kira/DapiFitcTexRed008.jp2: [testng] 02:49:20,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:49:20,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:20,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-13_02-49-20.log] [testng] 02:49:20,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@509b068e - End of configuration. [testng] [2024-05-13 02:49:20,859] [pool-1-thread-4] Initializing /data/kira/DapiFitcTexRed007.gif: [testng] 02:49:20,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:49:20,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:20,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-13_02-49-20.log] [testng] 02:49:20,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1306c9d3 - End of configuration. [testng] [2024-05-13 02:49:20,876] [pool-1-thread-3] Initializing /data/kira/DapiFitcTexRed003.jpg: [testng] 02:49:20,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:49:20,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:20,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-13_02-49-20.log] [testng] 02:49:20,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40ad90c3 - End of configuration. [testng] [2024-05-13 02:49:20,932] [pool-1-thread-2] Initializing /data/kira/DapiFitcTexRed008R.tif: [testng] 02:49:20,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:49:20,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:20,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-13_02-49-20.log] [testng] 02:49:20,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34e6618e - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 583, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 19 seconds Finished: SUCCESS