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Started by upstream project "BIOFORMATS-test-repo" build number 63 originally caused by: Started by upstream project "Trigger" build number 70 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins11598447322825920108.sh + '[' avi = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9407_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:59:16,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:59:16,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:59:16,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:59:16,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:59:16,994 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:59:16,994 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:59:16,995 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:59:16,995 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:59:16,995 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration. [testng] 01:59:16,996 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point [testng] 01:59:16,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 450 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-14 01:59:17,006] [main] java.version = 11.0.16 [testng] 01:59:17,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:59:17,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:17,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-14_01-59-17.log] [testng] 01:59:17,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-05-14 01:59:17,155] [main] testng.directory = /data [testng] [2024-05-14 01:59:17,155] [main] testng.configDirectory = /config [testng] [2024-05-14 01:59:17,220] [main] testng.multiplier = 1.0 [testng] [2024-05-14 01:59:17,222] [main] testng.in-memory = false [testng] [2024-05-14 01:59:17,222] [main] testng.allow-missing = false [testng] [2024-05-14 01:59:17,222] [main] user.language = en [testng] [2024-05-14 01:59:17,222] [main] user.country = ${user.country} [testng] [2024-05-14 01:59:17,222] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-14 01:59:18,379] [main] ---------------------------------------- [testng] [2024-05-14 01:59:18,379] [main] Total files: 40 [testng] [2024-05-14 01:59:18,379] [main] Scan time: 1.157 s (28 ms/file) [testng] [2024-05-14 01:59:18,379] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-14 02:03:10,672] [pool-1-thread-1] Initializing /data/kurt/63x_6um.avi: [testng] 02:03:10,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:03:10,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:10,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-14_02-03-10.log] [testng] 02:03:10,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29a41305 - End of configuration. [testng] [2024-05-14 02:03:10,731] [pool-1-thread-12] Initializing /data/ascb/TIRF.avi: [testng] 02:03:10,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:03:10,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:10,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-14_02-03-10.log] [testng] 02:03:10,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6afa05cc - End of configuration. [testng] [2024-05-14 02:03:11,008] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] 02:03:11,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:03:11,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:11,009 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-14_02-03-11.log] [testng] 02:03:11,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b48b086 - End of configuration. [testng] [2024-05-14 02:03:11,054] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] 02:03:11,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:03:11,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:11,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-14_02-03-11.log] [testng] 02:03:11,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5511c376 - End of configuration. [testng] [2024-05-14 02:03:11,098] [pool-1-thread-9] Initializing /data/qa-7450/MVI_3610.AVI: [testng] 02:03:11,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:03:11,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:11,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-14_02-03-11.log] [testng] 02:03:11,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59f3e75d - End of configuration. [testng] [2024-05-14 02:03:11,145] [pool-1-thread-8] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] 02:03:11,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:03:11,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:11,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-14_02-03-11.log] [testng] 02:03:11,146 |-INFO in ch.qos.logback.core.sift.SiftProcessor@557e8b67 - End of configuration. [testng] [2024-05-14 02:03:11,196] [pool-1-thread-7] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 02:03:11,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:03:11,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:11,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-14_02-03-11.log] [testng] 02:03:11,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15affc39 - End of configuration. [testng] [2024-05-14 02:03:11,213] [pool-1-thread-6] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] 02:03:11,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:03:11,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:11,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-14_02-03-11.log] [testng] 02:03:11,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5af4ec92 - End of configuration. [testng] [2024-05-14 02:04:04,971] [pool-1-thread-5] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 02:04:04,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:04:04,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:04,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-14_02-04-04.log] [testng] 02:04:04,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ca859be - End of configuration. [testng] [2024-05-14 02:04:05,000] [pool-1-thread-4] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] 02:04:05,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:04:05,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:05,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-14_02-04-05.log] [testng] 02:04:05,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d7a6249 - End of configuration. [testng] [2024-05-14 02:04:05,025] [pool-1-thread-3] Initializing /data/chris/APZ04_009.avi: [testng] 02:04:05,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:04:05,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:05,026 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-14_02-04-05.log] [testng] 02:04:05,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b8d7ce3 - End of configuration. [testng] [2024-05-14 02:04:14,565] [pool-1-thread-2] Initializing /data/simon/24_bit_problem.avi: [testng] 02:04:14,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:04:14,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:14,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-14_02-04-14.log] [testng] 02:04:14,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2053e1a8 - End of configuration. [testng] [2024-05-14 02:04:16,326] [pool-1-thread-10] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-05-14 02:04:16,348] [pool-1-thread-11] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2024-05-14 02:04:16,373] [pool-1-thread-7] Initializing /data/kurt/40x_6um_2.avi: [testng] [2024-05-14 02:04:16,427] [pool-1-thread-5] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-05-14 02:04:16,468] [pool-1-thread-4] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-05-14 02:04:16,500] [pool-1-thread-12] Initializing /data/william/worm.avi: [testng] [2024-05-14 02:04:16,514] [pool-1-thread-9] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-05-14 02:04:16,541] [pool-1-thread-2] Initializing /data/prairie/cornea dc and macs.AVI: [testng] [2024-05-14 02:04:16,570] [pool-1-thread-8] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2024-05-14 02:04:16,834] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [2024-05-14 02:04:16,982] [pool-1-thread-12] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-05-14 02:04:17,127] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2024-05-14 02:04:17,166] [pool-1-thread-5] Initializing /data/kurt/40x_6um.avi: [testng] [2024-05-14 02:04:17,387] [pool-1-thread-9] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-05-14 02:04:18,629] [pool-1-thread-8] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [2024-05-14 02:04:18,770] [pool-1-thread-10] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2024-05-14 02:04:18,802] [pool-1-thread-11] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] [2024-05-14 02:04:18,822] [pool-1-thread-4] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2024-05-14 02:04:18,856] [pool-1-thread-1] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-05-14 02:04:18,900] [pool-1-thread-2] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-05-14 02:04:18,995] [pool-1-thread-11] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-05-14 02:04:19,104] [pool-1-thread-7] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-05-14 02:04:19,446] [pool-1-thread-2] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] [2024-05-14 02:04:19,728] [pool-1-thread-4] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-05-14 02:04:19,818] [pool-1-thread-5] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2024-05-14 02:04:19,842] [pool-1-thread-7] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 15 seconds Finished: SUCCESS