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Started by upstream project "BIOFORMATS-test-repo" build number 6 originally caused by: Started by upstream project "Trigger" build number 9 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins11469438660998127415.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_945_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 11:52:30,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 11:52:30,801 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 11:52:30,801 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:52:30,802 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:52:30,802 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:52:30,802 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:52:30,803 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:52:30,803 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:52:30,803 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:52:30,804 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:52:30,804 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:52:30,804 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:52:30,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:52:30,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:52:30,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:52:30,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:52:30,981 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:52:30,981 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:52:30,981 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:52:30,981 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:52:30,982 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 11:52:30,982 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 11:52:30,982 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 179 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-20 11:52:30,990] [main] java.version = 17.0.2 [testng] 11:52:30,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:52:30,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:31,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-20_11-52-31.log] [testng] 11:52:31,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-03-20 11:52:31,035] [main] testng.directory = /data [testng] [2024-03-20 11:52:31,035] [main] testng.configDirectory = /config [testng] [2024-03-20 11:52:31,043] [main] testng.multiplier = 1.0 [testng] [2024-03-20 11:52:31,044] [main] testng.in-memory = false [testng] [2024-03-20 11:52:31,044] [main] testng.allow-missing = false [testng] [2024-03-20 11:52:31,044] [main] user.language = en [testng] [2024-03-20 11:52:31,044] [main] user.country = ${user.country} [testng] [2024-03-20 11:52:31,044] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-20 11:52:33,873] [main] ---------------------------------------- [testng] [2024-03-20 11:52:33,873] [main] Total files: 17 [testng] [2024-03-20 11:52:33,873] [main] Scan time: 2.829 s (166 ms/file) [testng] [2024-03-20 11:52:33,873] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-20 11:52:35,526] [pool-1-thread-1] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] 11:52:35,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:52:35,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:35,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-20_11-52-35.log] [testng] 11:52:35,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@721961bb - End of configuration. [testng] [2024-03-20 11:52:35,610] [pool-1-thread-12] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] 11:52:35,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:52:35,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:35,611 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-20_11-52-35.log] [testng] 11:52:35,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27371ac4 - End of configuration. [testng] [2024-03-20 11:52:35,661] [pool-1-thread-11] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] 11:52:35,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:52:35,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:35,662 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-20_11-52-35.log] [testng] 11:52:35,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@511d3085 - End of configuration. [testng] [2024-03-20 11:52:35,760] [pool-1-thread-10] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] 11:52:35,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:52:35,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:35,762 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-20_11-52-35.log] [testng] 11:52:35,762 |-INFO in ch.qos.logback.core.sift.SiftProcessor@870e377 - End of configuration. [testng] [2024-03-20 11:52:35,838] [pool-1-thread-9] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] 11:52:35,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:52:35,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:35,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-20_11-52-35.log] [testng] 11:52:35,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c9dc661 - End of configuration. [testng] [2024-03-20 11:52:35,900] [pool-1-thread-8] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] 11:52:35,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:52:35,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:35,901 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-20_11-52-35.log] [testng] 11:52:35,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@417bbda - End of configuration. [testng] [2024-03-20 11:52:35,956] [pool-1-thread-7] Initializing /data/samples/48bit 150x100x3.ipm: [testng] 11:52:35,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:52:35,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:35,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-20_11-52-35.log] [testng] 11:52:35,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c8f3373 - End of configuration. [testng] [2024-03-20 11:52:36,002] [pool-1-thread-6] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] 11:52:36,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:52:36,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:36,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-20_11-52-36.log] [testng] 11:52:36,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30732284 - End of configuration. [testng] [2024-03-20 11:52:36,068] [pool-1-thread-5] Initializing /data/samples/24bit 300x200x3.ipm: [testng] 11:52:36,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:52:36,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:36,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-20_11-52-36.log] [testng] 11:52:36,070 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78e081fb - End of configuration. [testng] [2024-03-20 11:52:36,127] [pool-1-thread-4] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 11:52:36,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:52:36,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:36,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-20_11-52-36.log] [testng] 11:52:36,128 |-INFO in ch.qos.logback.core.sift.SiftProcessor@166c846c - End of configuration. [testng] [2024-03-20 11:52:36,194] [pool-1-thread-3] Initializing /data/samples/16bit 320x256x1.ipm: [testng] 11:52:36,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:52:36,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:36,196 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-20_11-52-36.log] [testng] 11:52:36,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e8f3ffa - End of configuration. [testng] [2024-03-20 11:52:36,244] [pool-1-thread-2] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] 11:52:36,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:52:36,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:36,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-20_11-52-36.log] [testng] 11:52:36,245 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4538790 - End of configuration. [testng] [2024-03-20 11:52:38,522] [pool-1-thread-7] Initializing /data/christopher/Color48 Copy.ipm: [testng] [2024-03-20 11:52:38,573] [pool-1-thread-9] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] [2024-03-20 11:52:38,623] [pool-1-thread-1] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] [2024-03-20 11:52:38,673] [pool-1-thread-10] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] [2024-03-20 11:52:38,720] [pool-1-thread-8] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 14 seconds Finished: SUCCESS