![[Jenkins]](/jenkins/static/525a2df5/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 63 originally caused by: Started by upstream project "Trigger" build number 70 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins14833725408177235189.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9455_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:27:04,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:27:04,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:27:04,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:27:04,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:27:04,740 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:27:04,740 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:27:04,740 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:27:04,741 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:27:04,741 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration. [testng] 02:27:04,742 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point [testng] 02:27:04,742 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 625 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-14 02:27:04,752] [main] java.version = 11.0.16 [testng] 02:27:04,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:27:04,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:05,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-14_02-27-04.log] [testng] 02:27:05,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-05-14 02:27:05,049] [main] testng.directory = /data [testng] [2024-05-14 02:27:05,050] [main] testng.configDirectory = /config [testng] [2024-05-14 02:27:05,132] [main] testng.multiplier = 1.0 [testng] [2024-05-14 02:27:05,133] [main] testng.in-memory = false [testng] [2024-05-14 02:27:05,133] [main] testng.allow-missing = false [testng] [2024-05-14 02:27:05,134] [main] user.language = en [testng] [2024-05-14 02:27:05,134] [main] user.country = ${user.country} [testng] [2024-05-14 02:27:05,134] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-14 02:27:07,081] [main] ---------------------------------------- [testng] [2024-05-14 02:27:07,082] [main] Total files: 32 [testng] [2024-05-14 02:27:07,082] [main] Scan time: 1.947 s (60 ms/file) [testng] [2024-05-14 02:27:07,082] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-14 02:27:11,844] [pool-1-thread-1] Initializing /data/keith/test.1sc: [testng] 02:27:11,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:27:11,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:11,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-14_02-27-11.log] [testng] 02:27:11,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4474acc - End of configuration. [testng] [2024-05-14 02:27:11,899] [pool-1-thread-12] Initializing /data/geert/bad example1.1sc: [testng] 02:27:11,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:27:11,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:11,901 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-14_02-27-11.log] [testng] 02:27:11,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42f750e6 - End of configuration. [testng] [2024-05-14 02:27:11,943] [pool-1-thread-11] Initializing /data/samples/imagesEight.1sc: [testng] 02:27:11,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:27:11,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:11,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-14_02-27-11.log] [testng] 02:27:11,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11b1a104 - End of configuration. [testng] [2024-05-14 02:27:11,964] [pool-1-thread-10] Initializing /data/qa-29469/bad3.1sc: [testng] 02:27:11,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:27:11,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:11,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-14_02-27-11.log] [testng] 02:27:11,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@223c2c09 - End of configuration. [testng] [2024-05-14 02:27:12,001] [pool-1-thread-9] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] 02:27:12,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:27:12,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:12,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-14_02-27-12.log] [testng] 02:27:12,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff885c4 - End of configuration. [testng] [2024-05-14 02:27:12,090] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] 02:27:12,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:27:12,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:12,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-14_02-27-12.log] [testng] 02:27:12,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2228e4d1 - End of configuration. [testng] [2024-05-14 02:27:12,206] [pool-1-thread-7] Initializing /data/qa-16880/c-src v7.1sc: [testng] 02:27:12,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:27:12,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:12,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-14_02-27-12.log] [testng] 02:27:12,207 |-INFO in ch.qos.logback.core.sift.SiftProcessor@153243e - End of configuration. [testng] [2024-05-14 02:27:12,227] [pool-1-thread-6] Initializing /data/keith/test2.1sc: [testng] 02:27:12,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:27:12,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:12,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-14_02-27-12.log] [testng] 02:27:12,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56b175f - End of configuration. [testng] [2024-05-14 02:27:12,252] [pool-1-thread-5] Initializing /data/keith/pg020410saur3.1sc: [testng] 02:27:12,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:27:12,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:12,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-14_02-27-12.log] [testng] 02:27:12,253 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61384096 - End of configuration. [testng] [2024-05-14 02:27:12,267] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] 02:27:12,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:27:12,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:12,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-14_02-27-12.log] [testng] 02:27:12,268 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34ec535f - End of configuration. [testng] [2024-05-14 02:27:12,289] [pool-1-thread-3] Initializing /data/david/Opened in imageJ.tiff: [testng] 02:27:12,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:27:12,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:12,290 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-14_02-27-12.log] [testng] 02:27:12,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b77d941 - End of configuration. [testng] [2024-05-14 02:27:12,342] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] 02:27:12,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:27:12,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:12,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-14_02-27-12.log] [testng] 02:27:12,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@180ee78 - End of configuration. [testng] [2024-05-14 02:27:14,446] [pool-1-thread-5] Initializing /data/geert/good example1.1sc: [testng] [2024-05-14 02:27:14,483] [pool-1-thread-1] Initializing /data/qa-29469/good.1sc: [testng] [2024-05-14 02:27:14,510] [pool-1-thread-6] Initializing /data/geert/bad example1.1sc.jpg: [testng] [2024-05-14 02:27:14,550] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] [2024-05-14 02:27:14,577] [pool-1-thread-7] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2024-05-14 02:27:14,593] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2024-05-14 02:27:14,694] [pool-1-thread-10] Initializing /data/samples/Criterion.1sc: [testng] [2024-05-14 02:27:14,717] [pool-1-thread-4] Initializing /data/geert/bad example1.jpg: [testng] [2024-05-14 02:27:14,747] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2024-05-14 02:27:14,800] [pool-1-thread-12] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] [2024-05-14 02:27:14,817] [pool-1-thread-8] Initializing /data/qa-29459/bad.1sc: [testng] [2024-05-14 02:27:14,845] [pool-1-thread-9] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] [2024-05-14 02:27:15,438] [pool-1-thread-7] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2024-05-14 02:27:15,720] [pool-1-thread-8] Initializing /data/qa-29459/bad.jpg: [testng] [2024-05-14 02:27:15,753] [pool-1-thread-1] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] [2024-05-14 02:27:15,773] [pool-1-thread-10] Initializing /data/qa-29469/bad2.1sc: [testng] [2024-05-14 02:27:15,930] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [2024-05-14 02:27:16,154] [pool-1-thread-1] Initializing /data/keith/PF020328saur v3.1sc: [testng] [2024-05-14 02:27:16,169] [pool-1-thread-8] Initializing /data/geert/good example1.1sc.jpg: [testng] [2024-05-14 02:27:16,199] [pool-1-thread-7] Initializing /data/adrian/test_img.1sc: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS