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Started by upstream project "BIOFORMATS-test-repo" build number 64 originally caused by: Started by upstream project "Trigger" build number 71 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins3003280581836252452.sh + '[' cellr = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9635_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:37:20,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:37:20,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:37:21,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:37:21,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:37:21,013 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:37:21,013 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:37:21,013 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:37:21,013 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:37:21,014 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration. [testng] 02:37:21,023 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point [testng] 02:37:21,023 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 580 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-15 02:37:21,033] [main] java.version = 17.0.2 [testng] 02:37:21,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:37:21,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:21,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-15_02-37-21.log] [testng] 02:37:21,395 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-05-15 02:37:21,411] [main] testng.directory = /data [testng] [2024-05-15 02:37:21,411] [main] testng.configDirectory = /config [testng] [2024-05-15 02:37:21,487] [main] testng.multiplier = 1.0 [testng] [2024-05-15 02:37:21,487] [main] testng.in-memory = false [testng] [2024-05-15 02:37:21,488] [main] testng.allow-missing = false [testng] [2024-05-15 02:37:21,488] [main] user.language = en [testng] [2024-05-15 02:37:21,488] [main] user.country = ${user.country} [testng] [2024-05-15 02:37:21,488] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-15 02:37:47,735] [main] ---------------------------------------- [testng] [2024-05-15 02:37:47,735] [main] Total files: 256 [testng] [2024-05-15 02:37:47,735] [main] Scan time: 26.247 s (102 ms/file) [testng] [2024-05-15 02:37:47,735] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-15 02:38:20,267] [pool-1-thread-1] Initializing /data/qa-17107/example2/example2_d.mtb: [testng] 02:38:20,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:38:20,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:20,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-15_02-38-20.log] [testng] 02:38:20,269 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32525ff8 - End of configuration. [testng] [2024-05-15 02:38:20,314] [pool-1-thread-12] Initializing /data/clare/set_27_on_d.mtb: [testng] 02:38:20,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:38:20,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:20,315 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-15_02-38-20.log] [testng] 02:38:20,315 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ed63b38 - End of configuration. [testng] [2024-05-15 02:38:20,878] [pool-1-thread-11] Initializing /data/viktorie/test/test_d.mtb: [testng] 02:38:20,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:38:20,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:20,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-15_02-38-20.log] [testng] 02:38:20,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@455827b1 - End of configuration. [testng] [2024-05-15 02:38:20,907] [pool-1-thread-10] Initializing /data/kees/Mariaelena_d.mtb: [testng] 02:38:20,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:38:20,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:20,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-15_02-38-20.log] [testng] 02:38:20,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@593708b0 - End of configuration. [testng] [2024-05-15 02:38:21,274] [pool-1-thread-9] Initializing /data/colin/07-06-21/07-06-21_d.mtb: [testng] 02:38:21,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:38:21,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:21,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-15_02-38-21.log] [testng] 02:38:21,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@573c9442 - End of configuration. [testng] [2024-05-15 02:38:21,383] [pool-1-thread-8] Initializing /data/colin/08-10-09/08-10-09_d.mtb: [testng] 02:38:21,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:38:21,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:21,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-15_02-38-21.log] [testng] 02:38:21,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@188eb254 - End of configuration. [testng] [2024-05-15 02:38:25,228] [pool-1-thread-7] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb: [testng] 02:38:25,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:38:25,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:25,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-15_02-38-25.log] [testng] 02:38:25,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c41162e - End of configuration. [testng] [2024-05-15 02:38:25,281] [pool-1-thread-6] Initializing /data/viktorie/Structure.jpg: [testng] 02:38:25,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:38:25,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:25,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-15_02-38-25.log] [testng] 02:38:25,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1228ac17 - End of configuration. [testng] [2024-05-15 02:38:25,310] [pool-1-thread-5] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb: [testng] 02:38:25,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:38:25,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:25,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-15_02-38-25.log] [testng] 02:38:25,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4571c46 - End of configuration. [testng] [2024-05-15 02:38:26,787] [pool-1-thread-4] Initializing /data/qa-17107/plain/Plain_d.mtb: [testng] 02:38:26,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:38:26,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:26,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-15_02-38-26.log] [testng] 02:38:26,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ff6167a - End of configuration. [testng] [2024-05-15 02:38:26,818] [pool-1-thread-3] Initializing /data/viktorie/2Channels.tif: [testng] 02:38:26,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:38:26,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:26,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-15_02-38-26.log] [testng] 02:38:26,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@602468e6 - End of configuration. [testng] [2024-05-15 02:38:26,865] [pool-1-thread-2] Initializing /data/viktorie/090902/090902_d.mtb: [testng] 02:38:26,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:38:26,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:26,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-15_02-38-26.log] [testng] 02:38:26,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68324a79 - End of configuration. [testng] [2024-05-15 02:38:28,838] [pool-1-thread-11] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 50 seconds Finished: SUCCESS