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Started by upstream project "BIOFORMATS-test-repo" build number 7 originally caused by: Started by upstream project "Trigger" build number 10 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins14841688631323639236.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_965_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:18:15,452 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:18:15,453 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 00:18:15,453 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:18:15,454 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:18:15,455 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:18:15,455 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:18:15,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:18:15,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:18:15,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:18:15,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:18:15,458 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:18:15,458 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:18:15,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:18:15,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:18:15,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:18:15,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:18:15,657 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:18:15,658 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:18:15,658 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:18:15,658 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:18:15,658 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 00:18:15,659 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 00:18:15,659 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-21 00:18:15,670] [main] java.version = 21 [testng] 00:18:15,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:18:15,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:18:15,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-21_00-18-15.log] [testng] 00:18:15,719 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-03-21 00:18:15,721] [main] testng.directory = /data [testng] [2024-03-21 00:18:15,721] [main] testng.configDirectory = /config [testng] [2024-03-21 00:18:15,731] [main] testng.multiplier = 1.0 [testng] [2024-03-21 00:18:15,732] [main] testng.in-memory = false [testng] [2024-03-21 00:18:15,732] [main] testng.allow-missing = false [testng] [2024-03-21 00:18:15,732] [main] user.language = en [testng] [2024-03-21 00:18:15,732] [main] user.country = ${user.country} [testng] [2024-03-21 00:18:15,732] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-21 00:18:32,225] [main] ---------------------------------------- [testng] [2024-03-21 00:18:32,225] [main] Total files: 283 [testng] [2024-03-21 00:18:32,226] [main] Scan time: 16.493 s (58 ms/file) [testng] [2024-03-21 00:18:32,226] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-21 00:27:14,296] [pool-1-thread-1] Initializing /data/olympus/XYZt.oir: [testng] 00:27:14,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:27:14,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:14,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-21_00-27-14.log] [testng] 00:27:14,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78103978 - End of configuration. [testng] [2024-03-21 00:27:16,070] [pool-1-thread-12] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] 00:27:16,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:27:16,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:16,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-21_00-27-16.log] [testng] 00:27:16,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59341275 - End of configuration. [testng] [2024-03-21 00:27:16,287] [pool-1-thread-11] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] 00:27:16,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:27:16,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:16,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-21_00-27-16.log] [testng] 00:27:16,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4da5cc59 - End of configuration. [testng] [2024-03-21 00:27:16,916] [pool-1-thread-10] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] 00:27:16,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:27:16,916 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:16,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-21_00-27-16.log] [testng] 00:27:16,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@257a8e41 - End of configuration. [testng] [2024-03-21 00:27:17,054] [pool-1-thread-9] Initializing /data/qa-17919/f10187.oir: [testng] 00:27:17,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:27:17,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:17,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-21_00-27-17.log] [testng] 00:27:17,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3478822c - End of configuration. [testng] [2024-03-21 00:27:38,543] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.oir: [testng] 00:27:38,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:27:38,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:38,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-21_00-27-38.log] [testng] 00:27:38,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32cc429d - End of configuration. [testng] [2024-03-21 00:27:39,013] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] 00:27:39,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:27:39,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:39,015 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-21_00-27-39.log] [testng] 00:27:39,016 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2680c8ab - End of configuration. [testng] [2024-03-21 00:27:39,140] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] 00:27:39,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:27:39,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:39,141 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-21_00-27-39.log] [testng] 00:27:39,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c6ca6bb - End of configuration. [testng] [2024-03-21 00:27:39,293] [pool-1-thread-5] Initializing /data/qa-17922/example_multipart.oir: [testng] 00:27:39,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:27:39,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:39,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-21_00-27-39.log] [testng] 00:27:39,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ef39b6f - End of configuration. [testng] [2024-03-21 00:28:02,625] [pool-1-thread-4] Initializing /data/qa-17335/1.ome.tif: [testng] 00:28:02,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:28:02,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:02,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-21_00-28-02.log] [testng] 00:28:02,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3426f95a - End of configuration. [testng] [2024-03-21 00:28:02,690] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] 00:28:02,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:28:02,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:02,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-21_00-28-02.log] [testng] 00:28:02,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ff4ec3a - End of configuration. [testng] [2024-03-21 00:28:02,755] [pool-1-thread-2] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] 00:28:02,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:28:02,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:02,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-21_00-28-02.log] [testng] 00:28:02,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1781b6c5 - End of configuration. [testng] [2024-03-21 00:28:05,060] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-03-21 00:28:05,196] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-03-21 00:28:05,377] [pool-1-thread-6] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-03-21 00:28:11,522] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-03-21 00:28:11,652] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-03-21 00:28:11,810] [pool-1-thread-4] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-03-21 00:28:12,876] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-03-21 00:28:13,633] [pool-1-thread-2] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-03-21 00:28:14,053] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-03-21 00:28:15,203] [pool-1-thread-10] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-03-21 00:28:15,802] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-03-21 00:28:16,125] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-03-21 00:28:17,185] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-03-21 00:28:17,665] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-03-21 00:28:18,053] [pool-1-thread-4] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-03-21 00:28:18,532] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-03-21 00:28:18,707] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-03-21 00:28:19,273] [pool-1-thread-7] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-03-21 00:28:19,731] [pool-1-thread-11] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-03-21 00:28:19,881] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-03-21 00:28:20,250] [pool-1-thread-8] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-03-21 00:28:20,716] [pool-1-thread-1] Initializing /data/qa-17917/f10010.oir: [testng] [2024-03-21 00:28:50,648] [pool-1-thread-4] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-03-21 00:28:51,575] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-03-21 00:28:52,043] [pool-1-thread-2] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-03-21 00:28:52,468] [pool-1-thread-12] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-03-21 00:28:52,742] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-03-21 00:28:52,903] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-03-21 00:28:53,031] [pool-1-thread-8] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-03-21 00:28:54,390] [pool-1-thread-2] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-03-21 00:28:54,776] [pool-1-thread-7] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-03-21 00:28:55,045] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-03-21 00:28:55,172] [pool-1-thread-4] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-03-21 00:28:55,542] [pool-1-thread-12] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-03-21 00:28:55,810] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-03-21 00:28:56,874] [pool-1-thread-2] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-03-21 00:28:57,389] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-03-21 00:28:57,934] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-03-21 00:28:58,086] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-03-21 00:28:58,191] [pool-1-thread-3] Initializing /data/qa-17270/image1.oir: [testng] [2024-03-21 00:28:58,306] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-03-21 00:28:58,453] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-03-21 00:28:59,746] [pool-1-thread-4] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-03-21 00:28:59,853] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-03-21 00:29:00,013] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-03-21 00:29:00,291] [pool-1-thread-12] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-03-21 00:29:00,481] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-03-21 00:29:00,644] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-03-21 00:29:00,726] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-03-21 00:29:00,808] [pool-1-thread-2] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-03-21 00:29:02,201] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-03-21 00:29:02,746] [pool-1-thread-7] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-03-21 00:29:02,977] [pool-1-thread-12] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-03-21 00:29:03,261] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-03-21 00:29:03,724] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-03-21 00:29:04,186] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-03-21 00:29:04,487] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-03-21 00:29:04,676] [pool-1-thread-3] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-03-21 00:29:06,127] [pool-1-thread-11] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-03-21 00:29:06,562] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-03-21 00:29:06,974] [pool-1-thread-3] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-03-21 00:29:07,885] [pool-1-thread-8] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-03-21 00:29:07,966] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-03-21 00:29:09,392] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-03-21 00:29:09,784] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-03-21 00:29:10,051] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-03-21 00:29:10,199] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-03-21 00:29:10,770] [pool-1-thread-7] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-03-21 00:29:12,011] [pool-1-thread-10] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-03-21 00:29:12,660] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-03-21 00:29:13,775] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-03-21 00:29:13,992] [pool-1-thread-2] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-03-21 00:29:14,141] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-03-21 00:29:14,319] [pool-1-thread-11] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-03-21 00:29:14,511] [pool-1-thread-8] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-03-21 00:29:14,786] [pool-1-thread-6] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-03-21 00:29:15,720] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-03-21 00:29:16,155] [pool-1-thread-11] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-03-21 00:29:16,332] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-03-21 00:29:16,760] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-03-21 00:29:19,248] [pool-1-thread-6] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-03-21 00:29:20,295] [pool-1-thread-3] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-03-21 00:29:20,566] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-03-21 00:29:20,928] [pool-1-thread-11] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-03-21 00:29:21,768] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-03-21 00:29:58,667] [pool-1-thread-2] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-03-21 00:29:59,111] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-03-21 00:29:59,330] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-03-21 00:29:59,888] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-03-21 00:30:00,077] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-03-21 00:30:00,952] [pool-1-thread-2] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-03-21 00:30:01,199] [pool-1-thread-7] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-03-21 00:30:01,766] [pool-1-thread-3] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-03-21 00:30:02,087] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-03-21 00:30:02,221] [pool-1-thread-10] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-03-21 00:30:02,562] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-03-21 00:30:02,880] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-03-21 00:30:03,683] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-03-21 00:30:04,279] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-03-21 00:30:04,412] [pool-1-thread-6] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-03-21 00:30:04,571] [pool-1-thread-10] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-03-21 00:30:05,938] [pool-1-thread-4] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-03-21 00:30:06,444] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-03-21 00:30:07,256] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-03-21 00:30:07,478] [pool-1-thread-3] Initializing /data/qa-17270/stack1.oir: [testng] [2024-03-21 00:30:09,335] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-03-21 00:30:09,676] [pool-1-thread-6] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-03-21 00:30:10,104] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-03-21 00:30:10,221] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-03-21 00:30:11,065] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-03-21 00:30:11,346] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-03-21 00:30:11,670] [pool-1-thread-10] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-03-21 00:30:11,753] [pool-1-thread-11] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-03-21 00:30:11,944] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-03-21 00:30:12,916] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-03-21 00:30:13,534] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-03-21 00:30:13,918] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-03-21 00:30:14,140] [pool-1-thread-11] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-03-21 00:30:14,501] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-03-21 00:30:14,619] [pool-1-thread-4] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-03-21 00:30:15,087] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-03-21 00:30:16,159] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-03-21 00:30:16,278] [pool-1-thread-7] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-03-21 00:32:10,768] [pool-1-thread-6] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-03-21 00:32:11,297] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-03-21 00:32:12,020] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-03-21 00:32:13,201] [pool-1-thread-2] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-03-21 00:32:15,796] [pool-1-thread-4] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-03-21 00:32:16,027] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-03-21 00:32:16,776] [pool-1-thread-6] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-03-21 00:32:18,038] [pool-1-thread-11] Initializing /data/qa-17335/1.oir: [testng] [2024-03-21 00:32:18,321] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-03-21 00:32:27,307] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-03-21 00:32:30,919] [pool-1-thread-6] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-03-21 00:32:31,138] [pool-1-thread-11] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-03-21 00:32:32,240] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-03-21 00:32:33,110] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-03-21 00:32:33,448] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-03-21 00:32:34,786] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-03-21 00:32:36,132] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-03-21 00:32:36,302] [pool-1-thread-3] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-03-21 00:32:36,478] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-03-21 00:32:36,999] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-03-21 00:32:37,873] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-03-21 00:32:38,753] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-03-21 00:32:39,155] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-03-21 00:32:39,478] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-03-21 00:32:40,530] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-03-21 00:32:41,235] [pool-1-thread-12] Initializing /data/olympus/XYZt.vsi: [testng] [2024-03-21 00:32:41,454] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-03-21 00:32:42,185] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-03-21 00:32:45,072] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-03-21 00:32:46,046] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-03-21 00:32:46,534] [pool-1-thread-12] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-03-21 00:32:46,964] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-03-21 00:32:48,032] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-03-21 00:32:48,562] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-03-21 00:32:49,023] [pool-1-thread-11] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-03-21 00:32:50,443] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-03-21 00:32:50,584] [pool-1-thread-8] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-03-21 00:32:50,588] [pool-1-thread-6] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-03-21 00:32:51,025] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-03-21 00:32:51,284] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-03-21 00:32:52,606] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-03-21 00:32:53,584] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-03-21 00:32:54,316] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-03-21 00:32:54,480] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-03-21 00:32:55,311] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-03-21 00:32:56,283] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-03-21 00:32:56,431] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-03-21 00:32:56,903] [pool-1-thread-6] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-03-21 00:32:58,019] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-03-21 00:32:58,422] [pool-1-thread-12] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-03-21 00:32:58,537] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.vsi: FATAL: command execution failed java.nio.channels.ClosedChannelException at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer.onReadClosed(ChannelApplicationLayer.java:241) at org.jenkinsci.remoting.protocol.ApplicationLayer.onRecvClosed(ApplicationLayer.java:221) at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.onRecvClosed(ProtocolStack.java:825) at org.jenkinsci.remoting.protocol.FilterLayer.onRecvClosed(FilterLayer.java:289) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.onRecvClosed(SSLEngineFilterLayer.java:177) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.switchToNoSecure(SSLEngineFilterLayer.java:279) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processWrite(SSLEngineFilterLayer.java:501) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processQueuedWrites(SSLEngineFilterLayer.java:244) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doSend(SSLEngineFilterLayer.java:196) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doCloseSend(SSLEngineFilterLayer.java:209) at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.doCloseSend(ProtocolStack.java:793) at org.jenkinsci.remoting.protocol.ApplicationLayer.doCloseWrite(ApplicationLayer.java:172) at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer$ByteBufferCommandTransport.closeWrite(ChannelApplicationLayer.java:343) at hudson.remoting.Channel.close(Channel.java:1497) at hudson.remoting.Channel.close(Channel.java:1450) at hudson.slaves.SlaveComputer.closeChannel(SlaveComputer.java:943) at hudson.slaves.SlaveComputer.kill(SlaveComputer.java:909) at hudson.model.AbstractCIBase.killComputer(AbstractCIBase.java:97) at jenkins.model.Jenkins.lambda$_cleanUpDisconnectComputers$11(Jenkins.java:3785) at hudson.model.Queue._withLock(Queue.java:1401) at hudson.model.Queue.withLock(Queue.java:1275) at jenkins.model.Jenkins._cleanUpDisconnectComputers(Jenkins.java:3781) at jenkins.model.Jenkins.cleanUp(Jenkins.java:3662) at hudson.WebAppMain.contextDestroyed(WebAppMain.java:374) at org.eclipse.jetty.server.handler.ContextHandler.callContextDestroyed(ContextHandler.java:1059) at org.eclipse.jetty.servlet.ServletContextHandler.callContextDestroyed(ServletContextHandler.java:636) at org.eclipse.jetty.server.handler.ContextHandler.contextDestroyed(ContextHandler.java:1016) at org.eclipse.jetty.servlet.ServletHandler.doStop(ServletHandler.java:306) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182) at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205) at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97) at org.eclipse.jetty.security.SecurityHandler.doStop(SecurityHandler.java:412) at org.eclipse.jetty.security.ConstraintSecurityHandler.doStop(ConstraintSecurityHandler.java:413) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182) at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205) at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97) at org.eclipse.jetty.server.session.SessionHandler.doStop(SessionHandler.java:497) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182) at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205) at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97) at org.eclipse.jetty.server.handler.ContextHandler.stopContext(ContextHandler.java:1039) at org.eclipse.jetty.servlet.ServletContextHandler.stopContext(ServletContextHandler.java:399) at org.eclipse.jetty.webapp.WebAppContext.stopContext(WebAppContext.java:1311) at org.eclipse.jetty.server.handler.ContextHandler.doStop(ContextHandler.java:1087) at org.eclipse.jetty.servlet.ServletContextHandler.doStop(ServletContextHandler.java:312) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182) at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205) at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97) at org.eclipse.jetty.server.Server.doStop(Server.java:517) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at winstone.Launcher.shutdown(Launcher.java:442) at winstone.ShutdownHook.run(ShutdownHook.java:28) Caused: java.io.IOException: Backing channel 'JNLP4-connect connection from merge-ci-docker-1.merge-ci_omero-network/172.29.0.12:54364' is disconnected. at hudson.remoting.RemoteInvocationHandler.channelOrFail(RemoteInvocationHandler.java:215) at hudson.remoting.RemoteInvocationHandler.invoke(RemoteInvocationHandler.java:285) at jdk.proxy2/jdk.proxy2.$Proxy141.isAlive(Unknown Source) at hudson.Launcher$RemoteLauncher$ProcImpl.isAlive(Launcher.java:1212) at hudson.Launcher$RemoteLauncher$ProcImpl.join(Launcher.java:1204) at hudson.tasks.CommandInterpreter.join(CommandInterpreter.java:195) at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:145) at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:92) at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20) at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:818) at hudson.model.Build$BuildExecution.build(Build.java:199) at hudson.model.Build$BuildExecution.doRun(Build.java:164) at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:526) at hudson.model.Run.execute(Run.java:1895) at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:44) at hudson.model.ResourceController.execute(ResourceController.java:101) at hudson.model.Executor.run(Executor.java:442) FATAL: Unable to delete script file /tmp/jenkins14841688631323639236.sh java.nio.channels.ClosedChannelException at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer.onReadClosed(ChannelApplicationLayer.java:241) at org.jenkinsci.remoting.protocol.ApplicationLayer.onRecvClosed(ApplicationLayer.java:221) at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.onRecvClosed(ProtocolStack.java:825) at org.jenkinsci.remoting.protocol.FilterLayer.onRecvClosed(FilterLayer.java:289) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.onRecvClosed(SSLEngineFilterLayer.java:177) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.switchToNoSecure(SSLEngineFilterLayer.java:279) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processWrite(SSLEngineFilterLayer.java:501) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.processQueuedWrites(SSLEngineFilterLayer.java:244) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doSend(SSLEngineFilterLayer.java:196) at org.jenkinsci.remoting.protocol.impl.SSLEngineFilterLayer.doCloseSend(SSLEngineFilterLayer.java:209) at org.jenkinsci.remoting.protocol.ProtocolStack$Ptr.doCloseSend(ProtocolStack.java:793) at org.jenkinsci.remoting.protocol.ApplicationLayer.doCloseWrite(ApplicationLayer.java:172) at org.jenkinsci.remoting.protocol.impl.ChannelApplicationLayer$ByteBufferCommandTransport.closeWrite(ChannelApplicationLayer.java:343) at hudson.remoting.Channel.close(Channel.java:1497) at hudson.remoting.Channel.close(Channel.java:1450) at hudson.slaves.SlaveComputer.closeChannel(SlaveComputer.java:943) at hudson.slaves.SlaveComputer.kill(SlaveComputer.java:909) at hudson.model.AbstractCIBase.killComputer(AbstractCIBase.java:97) at jenkins.model.Jenkins.lambda$_cleanUpDisconnectComputers$11(Jenkins.java:3785) at hudson.model.Queue._withLock(Queue.java:1401) at hudson.model.Queue.withLock(Queue.java:1275) at jenkins.model.Jenkins._cleanUpDisconnectComputers(Jenkins.java:3781) at jenkins.model.Jenkins.cleanUp(Jenkins.java:3662) at hudson.WebAppMain.contextDestroyed(WebAppMain.java:374) at org.eclipse.jetty.server.handler.ContextHandler.callContextDestroyed(ContextHandler.java:1059) at org.eclipse.jetty.servlet.ServletContextHandler.callContextDestroyed(ServletContextHandler.java:636) at org.eclipse.jetty.server.handler.ContextHandler.contextDestroyed(ContextHandler.java:1016) at org.eclipse.jetty.servlet.ServletHandler.doStop(ServletHandler.java:306) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182) at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205) at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97) at org.eclipse.jetty.security.SecurityHandler.doStop(SecurityHandler.java:412) at org.eclipse.jetty.security.ConstraintSecurityHandler.doStop(ConstraintSecurityHandler.java:413) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182) at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205) at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97) at org.eclipse.jetty.server.session.SessionHandler.doStop(SessionHandler.java:497) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182) at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205) at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97) at org.eclipse.jetty.server.handler.ContextHandler.stopContext(ContextHandler.java:1039) at org.eclipse.jetty.servlet.ServletContextHandler.stopContext(ServletContextHandler.java:399) at org.eclipse.jetty.webapp.WebAppContext.stopContext(WebAppContext.java:1311) at org.eclipse.jetty.server.handler.ContextHandler.doStop(ContextHandler.java:1087) at org.eclipse.jetty.servlet.ServletContextHandler.doStop(ServletContextHandler.java:312) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at org.eclipse.jetty.util.component.ContainerLifeCycle.stop(ContainerLifeCycle.java:182) at org.eclipse.jetty.util.component.ContainerLifeCycle.doStop(ContainerLifeCycle.java:205) at org.eclipse.jetty.server.handler.AbstractHandler.doStop(AbstractHandler.java:97) at org.eclipse.jetty.server.Server.doStop(Server.java:517) at org.eclipse.jetty.util.component.AbstractLifeCycle.stop(AbstractLifeCycle.java:132) at winstone.Launcher.shutdown(Launcher.java:442) at winstone.ShutdownHook.run(ShutdownHook.java:28) Caused: hudson.remoting.ChannelClosedException: Channel "hudson.remoting.Channel@4b3641b6:JNLP4-connect connection from merge-ci-docker-1.merge-ci_omero-network/172.29.0.12:54364": Remote call on JNLP4-connect connection from merge-ci-docker-1.merge-ci_omero-network/172.29.0.12:54364 failed. The channel is closing down or has closed down at hudson.remoting.Channel.call(Channel.java:996) at hudson.FilePath.act(FilePath.java:1230) at hudson.FilePath.act(FilePath.java:1219) at hudson.FilePath.delete(FilePath.java:1766) at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:163) at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:92) at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20) at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:818) at hudson.model.Build$BuildExecution.build(Build.java:199) at hudson.model.Build$BuildExecution.doRun(Build.java:164) at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:526) at hudson.model.Run.execute(Run.java:1895) at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:44) at hudson.model.ResourceController.execute(ResourceController.java:101) at hudson.model.Executor.run(Executor.java:442) Build step 'Execute shell' marked build as failure Finished: FAILURE