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Started by upstream project "BIOFORMATS-test-repo" build number 65 originally caused by: Started by upstream project "Trigger" build number 72 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins16164809458330463137.sh + '[' pict = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9700_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:30:46,279 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:30:46,281 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:30:46,281 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:30:46,282 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:30:46,282 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:30:46,282 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:30:46,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:30:46,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:30:46,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:30:46,284 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:30:46,284 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:30:46,284 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:30:46,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:30:46,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:30:46,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:30:46,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:30:46,508 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:30:46,508 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:30:46,508 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:30:46,508 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:30:46,508 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:30:46,509 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:30:46,509 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 226 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-16 01:30:46,519] [main] java.version = 21 [testng] 01:30:46,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:30:46,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:46,573 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-16_01-30-46.log] [testng] 01:30:46,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-05-16 01:30:46,576] [main] testng.directory = /data [testng] [2024-05-16 01:30:46,577] [main] testng.configDirectory = /config [testng] [2024-05-16 01:30:46,586] [main] testng.multiplier = 1.0 [testng] [2024-05-16 01:30:46,587] [main] testng.in-memory = false [testng] [2024-05-16 01:30:46,587] [main] testng.allow-missing = false [testng] [2024-05-16 01:30:46,587] [main] user.language = en [testng] [2024-05-16 01:30:46,587] [main] user.country = ${user.country} [testng] [2024-05-16 01:30:46,587] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-16 01:30:46,980] [main] ---------------------------------------- [testng] [2024-05-16 01:30:46,980] [main] Total files: 25 [testng] [2024-05-16 01:30:46,980] [main] Scan time: 0.393 s (15 ms/file) [testng] [2024-05-16 01:30:46,981] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-16 01:30:49,741] [pool-1-thread-1] Initializing /data/jqd/sixteenBit.pict: [testng] 01:30:49,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:30:49,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-16_01-30-49.log] [testng] 01:30:49,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13fae0b - End of configuration. [testng] [2024-05-16 01:30:49,767] [pool-1-thread-12] Initializing /data/misc/planet.png: [testng] 01:30:49,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:30:49,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-16_01-30-49.log] [testng] 01:30:49,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a1b15ee - End of configuration. [testng] [2024-05-16 01:30:49,779] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 01:30:49,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:30:49,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,781 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-16_01-30-49.log] [testng] 01:30:49,781 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42bcb890 - End of configuration. [testng] [2024-05-16 01:30:49,847] [pool-1-thread-10] Initializing /data/brian/images/WHT.PCT: [testng] 01:30:49,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:30:49,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-16_01-30-49.log] [testng] 01:30:49,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a18c3dd - End of configuration. [testng] [2024-05-16 01:30:49,921] [pool-1-thread-9] Initializing /data/jqd/mire32.pict: [testng] 01:30:49,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:30:49,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,922 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-16_01-30-49.log] [testng] 01:30:49,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41041080 - End of configuration. [testng] [2024-05-16 01:30:49,987] [pool-1-thread-8] Initializing /data/jqd/mireSixteen.pict: [testng] 01:30:49,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:30:49,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-16_01-30-49.log] [testng] 01:30:49,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e26149a - End of configuration. [testng] [2024-05-16 01:30:50,020] [pool-1-thread-7] Initializing /data/wayne/PotatoMeristem.pict: [testng] 01:30:50,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:30:50,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:50,027 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-16_01-30-50.log] [testng] 01:30:50,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2367fac4 - End of configuration. [testng] [2024-05-16 01:30:50,110] [pool-1-thread-6] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 01:30:50,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:30:50,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:50,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-16_01-30-50.log] [testng] 01:30:50,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dc0ef37 - End of configuration. [testng] [2024-05-16 01:30:50,388] [pool-1-thread-5] Initializing /data/misc/swlogo.pict: [testng] 01:30:50,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:30:50,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:50,389 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-16_01-30-50.log] [testng] 01:30:50,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20d30184 - End of configuration. [testng] [2024-05-16 01:30:50,415] [pool-1-thread-4] Initializing /data/brian/images/VENUS.pct: [testng] 01:30:50,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:30:50,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:50,416 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-16_01-30-50.log] [testng] 01:30:50,416 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44998faf - End of configuration. [testng] [2024-05-16 01:30:50,457] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 01:30:50,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:30:50,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:50,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-16_01-30-50.log] [testng] 01:30:50,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@692740ee - End of configuration. [testng] [2024-05-16 01:30:50,767] [pool-1-thread-2] Initializing /data/brian/images/BLK.PCT: [testng] 01:30:50,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:30:50,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:50,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-16_01-30-50.log] [testng] 01:30:50,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61e80ead - End of configuration. [testng] [2024-05-16 01:30:52,448] [pool-1-thread-8] Initializing /data/misc/planet2.pict: [testng] [2024-05-16 01:30:52,504] [pool-1-thread-9] Initializing /data/brian/images/BLU.PCT: [testng] [2024-05-16 01:30:52,533] [pool-1-thread-5] Initializing /data/jqd/32bit.pict: [testng] [2024-05-16 01:30:52,591] [pool-1-thread-2] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2024-05-16 01:30:52,599] [pool-1-thread-1] Initializing /data/brian/images/GRN.PCT: [testng] [2024-05-16 01:30:52,748] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-05-16 01:30:52,763] [pool-1-thread-12] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-05-16 01:30:52,843] [pool-1-thread-4] Initializing /data/brian/images/YEL.PCT: [testng] [2024-05-16 01:30:53,029] [pool-1-thread-7] Initializing /data/brian/images/RED.PCT: [testng] [2024-05-16 01:30:53,064] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2024-05-16 01:30:53,225] [pool-1-thread-2] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-05-16 01:30:53,233] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-05-16 01:30:53,298] [pool-1-thread-1] Initializing /data/misc/planet.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS