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Started by upstream project "BIOFORMATS-test-repo" build number 65 originally caused by: Started by upstream project "Trigger" build number 72 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins6073055169115103526.sh + '[' imaris = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9766_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:16:37,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:16:37,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:16:38,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:16:38,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:16:38,007 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:16:38,007 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:16:38,007 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:16:38,008 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:16:38,008 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@428640fa - End of configuration. [testng] 02:16:38,009 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6bd61f98 - Registering current configuration as safe fallback point [testng] 02:16:38,009 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48aca48b - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 491 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-16 02:16:38,031] [main] java.version = 21 [testng] 02:16:38,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:16:38,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:38,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-16_02-16-38.log] [testng] 02:16:38,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-05-16 02:16:38,082] [main] testng.directory = /data [testng] [2024-05-16 02:16:38,083] [main] testng.configDirectory = /config [testng] [2024-05-16 02:16:38,126] [main] testng.multiplier = 1.0 [testng] [2024-05-16 02:16:38,128] [main] testng.in-memory = false [testng] [2024-05-16 02:16:38,128] [main] testng.allow-missing = false [testng] [2024-05-16 02:16:38,128] [main] user.language = en [testng] [2024-05-16 02:16:38,128] [main] user.country = ${user.country} [testng] [2024-05-16 02:16:38,128] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-16 02:16:46,471] [main] ---------------------------------------- [testng] [2024-05-16 02:16:46,471] [main] Total files: 67 [testng] [2024-05-16 02:16:46,471] [main] Scan time: 8.342 s (124 ms/file) [testng] [2024-05-16 02:16:46,471] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 59 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-16 02:17:12,550] [pool-1-thread-1] Initializing /data/generated/10-31_E_t0006.ims: [testng] 02:17:12,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:17:12,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:12,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-16_02-17-12.log] [testng] 02:17:12,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f3e2635 - End of configuration. [testng] [2024-05-16 02:17:12,577] [pool-1-thread-12] Initializing /data/public/davemason/Convallaria_3C_3T_2x2grid_confocal.ims: [testng] 02:17:12,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:17:12,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:12,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-16_02-17-12.log] [testng] 02:17:12,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3df014e9 - End of configuration. [testng] [2024-05-16 02:17:12,640] [pool-1-thread-11] Initializing /data/jason/imaris_5_5_demoimages/SwimmingAlgae.ims: [testng] 02:17:12,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:17:12,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:12,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-16_02-17-12.log] [testng] 02:17:12,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6451ca10 - End of configuration. [testng] [2024-05-16 02:17:12,732] [pool-1-thread-10] Initializing /data/generated/MF-2CH-Z-T.ims: [testng] 02:17:12,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:17:12,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:12,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-16_02-17-12.log] [testng] 02:17:12,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7704d704 - End of configuration. [testng] [2024-05-16 02:17:12,748] [pool-1-thread-9] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal_deconvolved.ims: [testng] 02:17:12,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:17:12,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:12,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-16_02-17-12.log] [testng] 02:17:12,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cff24c9 - End of configuration. [testng] [2024-05-16 02:17:12,807] [pool-1-thread-8] Initializing /data/generated/10-31_E_t0013.ims: [testng] 02:17:12,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:17:12,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:12,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-16_02-17-12.log] [testng] 02:17:12,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b58b62e - End of configuration. [testng] [2024-05-16 02:17:12,824] [pool-1-thread-7] Initializing /data/qa-17839/Fusion _Stack.ims: [testng] 02:17:12,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:17:12,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:12,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-16_02-17-12.log] [testng] 02:17:12,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7253a6a1 - End of configuration. [testng] [2024-05-16 02:17:12,891] [pool-1-thread-6] Initializing /data/public/eliana/retina_large.ims: [testng] 02:17:12,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:17:12,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:12,893 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-16_02-17-12.log] [testng] 02:17:12,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@308cd3e3 - End of configuration. [testng] [2024-05-16 02:17:12,928] [pool-1-thread-5] Initializing /data/jason/imaris_5_5_demoimages/PtK2Cell.ims: [testng] 02:17:12,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:17:12,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:12,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-16_02-17-12.log] [testng] 02:17:12,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e114881 - End of configuration. [testng] [2024-05-16 02:17:12,966] [pool-1-thread-4] Initializing /data/generated/10-31_E_t0010.ims: [testng] 02:17:12,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:17:12,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:12,968 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-16_02-17-12.log] [testng] 02:17:12,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e715bec - End of configuration. [testng] [2024-05-16 02:17:12,981] [pool-1-thread-3] Initializing /data/generated/10-31_E_t0014.ims: [testng] 02:17:12,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:17:12,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:12,982 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-16_02-17-12.log] [testng] 02:17:12,982 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23ac65bc - End of configuration. [testng] [2024-05-16 02:17:13,001] [pool-1-thread-2] Initializing /data/qa-17515/Organoid=1.ims: [testng] 02:17:13,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:17:13,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:13,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-16_02-17-13.log] [testng] 02:17:13,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39e28d0f - End of configuration. BUILD SUCCESSFUL Total time: 2 minutes 54 seconds Finished: SUCCESS