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Started by upstream project "BIOFORMATS-test-repo" build number 65 originally caused by: Started by upstream project "Trigger" build number 72 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins4021781428691161932.sh + '[' psd = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9782_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:27:42,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:27:42,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:27:42,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:27:42,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:27:42,533 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:27:42,534 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:27:42,534 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:27:42,534 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:27:42,534 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@428640fa - End of configuration. [testng] 02:27:42,535 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6bd61f98 - Registering current configuration as safe fallback point [testng] 02:27:42,536 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48aca48b - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 412 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-16 02:27:42,571] [main] java.version = 21 [testng] 02:27:42,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:27:42,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:42,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-16_02-27-42.log] [testng] 02:27:42,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-05-16 02:27:42,629] [main] testng.directory = /data [testng] [2024-05-16 02:27:42,629] [main] testng.configDirectory = /config [testng] [2024-05-16 02:27:42,651] [main] testng.multiplier = 1.0 [testng] [2024-05-16 02:27:42,652] [main] testng.in-memory = false [testng] [2024-05-16 02:27:42,652] [main] testng.allow-missing = false [testng] [2024-05-16 02:27:42,652] [main] user.language = en [testng] [2024-05-16 02:27:42,653] [main] user.country = ${user.country} [testng] [2024-05-16 02:27:42,653] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-16 02:27:43,272] [main] ---------------------------------------- [testng] [2024-05-16 02:27:43,272] [main] Total files: 18 [testng] [2024-05-16 02:27:43,272] [main] Scan time: 0.619 s (34 ms/file) [testng] [2024-05-16 02:27:43,273] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-16 02:27:45,208] [pool-1-thread-1] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 02:27:45,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:27:45,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:45,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-16_02-27-45.log] [testng] 02:27:45,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ee64105 - End of configuration. [testng] [2024-05-16 02:27:45,245] [pool-1-thread-12] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 02:27:45,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:27:45,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:45,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-16_02-27-45.log] [testng] 02:27:45,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c652f64 - End of configuration. [testng] [2024-05-16 02:27:45,281] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 02:27:45,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:27:45,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:45,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-16_02-27-45.log] [testng] 02:27:45,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cd45fd8 - End of configuration. [testng] [2024-05-16 02:27:45,307] [pool-1-thread-10] Initializing /data/misc/vig_drawing_1.psd: [testng] 02:27:45,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:27:45,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:45,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-16_02-27-45.log] [testng] 02:27:45,308 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2175c67f - End of configuration. [testng] [2024-05-16 02:27:45,339] [pool-1-thread-9] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 02:27:45,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:27:45,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:45,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-16_02-27-45.log] [testng] 02:27:45,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67100144 - End of configuration. [testng] [2024-05-16 02:27:45,377] [pool-1-thread-8] Initializing /data/misc/venus_composite_8bit.psd: [testng] 02:27:45,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:27:45,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:45,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-16_02-27-45.log] [testng] 02:27:45,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b30aa9c - End of configuration. [testng] [2024-05-16 02:27:45,422] [pool-1-thread-7] Initializing /data/misc/venus_composite.psd: [testng] 02:27:45,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:27:45,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:45,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-16_02-27-45.log] [testng] 02:27:45,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d2ff85f - End of configuration. [testng] [2024-05-16 02:27:45,456] [pool-1-thread-6] Initializing /data/ascb/607x.psd: [testng] 02:27:45,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:27:45,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:45,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-16_02-27-45.log] [testng] 02:27:45,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31bafdac - End of configuration. [testng] [2024-05-16 02:27:45,517] [pool-1-thread-5] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 02:27:45,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:27:45,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:45,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-16_02-27-45.log] [testng] 02:27:45,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765e3ab8 - End of configuration. [testng] [2024-05-16 02:27:45,604] [pool-1-thread-4] Initializing /data/big-images/8kx8k.psd: [testng] 02:27:45,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:27:45,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:45,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-16_02-27-45.log] [testng] 02:27:45,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b4b98bf - End of configuration. [testng] [2024-05-16 02:27:45,759] [pool-1-thread-3] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 02:27:45,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:27:45,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:45,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-16_02-27-45.log] [testng] 02:27:45,775 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bf389d5 - End of configuration. [testng] [2024-05-16 02:27:45,951] [pool-1-thread-2] Initializing /data/ascb/423.psd: [testng] 02:27:45,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:27:45,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:45,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-16_02-27-45.log] [testng] 02:27:45,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76280d78 - End of configuration. [testng] [2024-05-16 02:27:50,764] [pool-1-thread-10] Initializing /data/misc/glossy_orbs.psd: [testng] [2024-05-16 02:27:50,777] [pool-1-thread-9] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] [2024-05-16 02:27:50,802] [pool-1-thread-11] Initializing /data/cris/house.tif: [testng] [2024-05-16 02:27:50,844] [pool-1-thread-7] Initializing /data/misc/glossy_buttons.psd: [testng] [2024-05-16 02:27:50,864] [pool-1-thread-1] Initializing /data/simon/colour_separated_image.psd: [testng] [2024-05-16 02:27:50,885] [pool-1-thread-3] Initializing /data/misc/smilie.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 43 seconds Finished: SUCCESS