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Started by upstream project "BIOFORMATS-test-repo" build number 65 originally caused by: Started by upstream project "Trigger" build number 72 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins12923020152442096906.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9805_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:42:51,612 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:42:51,613 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 02:42:51,613 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:42:51,614 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:42:51,615 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:42:51,615 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:42:51,615 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:42:51,615 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:42:51,616 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:42:51,616 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:42:51,617 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:42:51,617 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:42:51,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:42:51,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:42:51,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:42:51,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:42:51,809 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:42:51,809 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:42:51,810 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:42:51,810 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:42:51,810 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 02:42:51,811 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 02:42:51,811 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-16 02:42:51,820] [main] java.version = 21 [testng] 02:42:51,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:42:51,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:51,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-16_02-42-51.log] [testng] 02:42:51,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-05-16 02:42:51,868] [main] testng.directory = /data [testng] [2024-05-16 02:42:51,868] [main] testng.configDirectory = /config [testng] [2024-05-16 02:42:51,877] [main] testng.multiplier = 1.0 [testng] [2024-05-16 02:42:51,877] [main] testng.in-memory = false [testng] [2024-05-16 02:42:51,877] [main] testng.allow-missing = false [testng] [2024-05-16 02:42:51,878] [main] user.language = en [testng] [2024-05-16 02:42:51,878] [main] user.country = ${user.country} [testng] [2024-05-16 02:42:51,878] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-16 02:42:53,862] [main] ---------------------------------------- [testng] [2024-05-16 02:42:53,862] [main] Total files: 31 [testng] [2024-05-16 02:42:53,862] [main] Scan time: 1.984 s (64 ms/file) [testng] [2024-05-16 02:42:53,863] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-16 02:42:56,411] [pool-1-thread-1] Initializing /data/david/000000_000001.jpx: [testng] 02:42:56,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:42:56,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:56,413 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-16_02-42-56.log] [testng] 02:42:56,413 |-INFO in ch.qos.logback.core.sift.SiftProcessor@773b8390 - End of configuration. [testng] [2024-05-16 02:42:56,471] [pool-1-thread-12] Initializing /data/vikram/Captured 2.jp2: [testng] 02:42:56,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:42:56,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:56,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-16_02-42-56.log] [testng] 02:42:56,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c2c3771 - End of configuration. [testng] [2024-05-16 02:42:56,568] [pool-1-thread-11] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] 02:42:56,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:42:56,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:56,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-16_02-42-56.log] [testng] 02:42:56,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20b3b008 - End of configuration. [testng] [2024-05-16 02:42:56,596] [pool-1-thread-10] Initializing /data/david/multichannel-2d test.jp2: [testng] 02:42:56,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:42:56,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:56,597 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-16_02-42-56.log] [testng] 02:42:56,597 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47ec6f89 - End of configuration. [testng] [2024-05-16 02:42:56,622] [pool-1-thread-9] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] 02:42:56,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:42:56,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:56,623 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-16_02-42-56.log] [testng] 02:42:56,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@403d6e6a - End of configuration. [testng] [2024-05-16 02:42:56,658] [pool-1-thread-8] Initializing /data/kraig/head.jp2: [testng] 02:42:56,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:42:56,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:56,659 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-16_02-42-56.log] [testng] 02:42:56,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41bf906d - End of configuration. [testng] [2024-05-16 02:42:56,696] [pool-1-thread-7] Initializing /data/venu/Multichannel 3.jp2: [testng] 02:42:56,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:42:56,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:56,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-16_02-42-56.log] [testng] 02:42:56,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d4538d5 - End of configuration. [testng] [2024-05-16 02:42:56,802] [pool-1-thread-6] Initializing /data/vikram/Captured 3.jp2: [testng] 02:42:56,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:42:56,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:56,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-16_02-42-56.log] [testng] 02:42:56,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ea83688 - End of configuration. [testng] [2024-05-16 02:42:56,831] [pool-1-thread-5] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 02:42:56,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:42:56,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:56,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-16_02-42-56.log] [testng] 02:42:56,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e112d15 - End of configuration. [testng] [2024-05-16 02:42:57,211] [pool-1-thread-4] Initializing /data/aryeh/flour 12.jp2: [testng] 02:42:57,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:42:57,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:57,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-16_02-42-57.log] [testng] 02:42:57,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d5bce3 - End of configuration. [testng] [2024-05-16 02:42:57,254] [pool-1-thread-3] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] 02:42:57,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:42:57,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:57,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-16_02-42-57.log] [testng] 02:42:57,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d3eb071 - End of configuration. [testng] [2024-05-16 02:42:57,317] [pool-1-thread-2] Initializing /data/big-images/4kx4k.jpf: [testng] 02:42:57,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:42:57,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:42:57,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-16_02-42-57.log] [testng] 02:42:57,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@605135c4 - End of configuration. [testng] [2024-05-16 02:42:59,222] [pool-1-thread-11] Initializing /data/big-images/2kx2k.jpf: [testng] [2024-05-16 02:42:59,232] [pool-1-thread-6] Initializing /data/misc/clown-rgb.jp2: [testng] [2024-05-16 02:42:59,246] [pool-1-thread-12] Initializing /data/frans/flower.jp2: [testng] [2024-05-16 02:42:59,646] [pool-1-thread-8] Initializing /data/misc/clown-rgb.jbig: [testng] [2024-05-16 02:42:59,672] [pool-1-thread-4] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2024-05-16 02:43:00,332] [pool-1-thread-8] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2024-05-16 02:43:00,477] [pool-1-thread-6] Initializing /data/vikram/Captured 1.jp2: [testng] [2024-05-16 02:43:01,397] [pool-1-thread-6] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-05-16 02:43:03,879] [pool-1-thread-9] Initializing /data/misc/clown-rgb.jpc: [testng] [2024-05-16 02:43:04,583] [pool-1-thread-9] Initializing /data/venu/Multichannel 3a.jpg: [testng] [2024-05-16 02:43:05,133] [pool-1-thread-1] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] [2024-05-16 02:43:05,538] [pool-1-thread-9] Initializing /data/vikram/Captured 5.jp2: [testng] [2024-05-16 02:43:06,196] [pool-1-thread-8] Initializing /data/david/cy5-tph.jp2: [testng] [2024-05-16 02:43:06,252] [pool-1-thread-1] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2024-05-16 02:43:06,576] [pool-1-thread-9] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-05-16 02:43:09,331] [pool-1-thread-11] Initializing /data/vikram/Captured 4.jp2: [testng] [2024-05-16 02:43:09,684] [pool-1-thread-7] Initializing /data/david/C1R1_FOS.jp2: [testng] [2024-05-16 02:43:10,402] [pool-1-thread-11] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 29 seconds Finished: SUCCESS