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Started by upstream project "BIOFORMATS-test-repo" build number 66 originally caused by: Started by upstream project "Trigger" build number 74 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins9334943470800138134.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9824_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:53:27,948 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:53:27,951 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 07:53:27,951 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:53:27,952 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:53:27,953 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:53:27,953 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:53:27,953 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:53:27,953 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:53:27,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:53:27,955 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:53:27,956 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:53:27,956 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:53:28,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:53:28,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:53:28,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:53:28,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:53:28,419 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:53:28,419 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:53:28,419 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:53:28,420 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:53:28,420 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 07:53:28,421 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 07:53:28,421 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 466 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-17 07:53:28,431] [main] java.version = 1.8.0_342 [testng] 07:53:28,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:53:28,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:53:28,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_07-53-28.log] [testng] 07:53:28,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-17 07:53:28,493] [main] testng.directory = /data [testng] [2024-05-17 07:53:28,494] [main] testng.configDirectory = /config [testng] [2024-05-17 07:53:28,511] [main] testng.multiplier = 1.0 [testng] [2024-05-17 07:53:28,512] [main] testng.in-memory = false [testng] [2024-05-17 07:53:28,512] [main] testng.allow-missing = false [testng] [2024-05-17 07:53:28,512] [main] user.language = en [testng] [2024-05-17 07:53:28,512] [main] user.country = ${user.country} [testng] [2024-05-17 07:53:28,512] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-17 07:53:49,095] [main] ---------------------------------------- [testng] [2024-05-17 07:53:49,096] [main] Total files: 283 [testng] [2024-05-17 07:53:49,096] [main] Scan time: 20.583 s (72 ms/file) [testng] [2024-05-17 07:53:49,096] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-17 08:02:31,423] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] 08:02:31,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:02:31,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:02:31,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_08-02-31.log] [testng] 08:02:31,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48ac31b7 - End of configuration. [testng] [2024-05-17 08:02:31,491] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] 08:02:31,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:02:31,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:02:31,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-17_08-02-31.log] [testng] 08:02:31,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74be7905 - End of configuration. [testng] [2024-05-17 08:02:31,573] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-1.tif: [testng] 08:02:31,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:02:31,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:02:31,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_08-02-31.log] [testng] 08:02:31,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f2dd756 - End of configuration. [testng] [2024-05-17 08:02:31,632] [pool-1-thread-10] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] 08:02:31,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:02:31,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:02:31,633 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_08-02-31.log] [testng] 08:02:31,633 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e52a670 - End of configuration. [testng] [2024-05-17 08:02:32,381] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] 08:02:32,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:02:32,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:02:32,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_08-02-32.log] [testng] 08:02:32,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43ee8729 - End of configuration. [testng] [2024-05-17 08:02:32,456] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] 08:02:32,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:02:32,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:02:32,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_08-02-32.log] [testng] 08:02:32,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5695e92d - End of configuration. [testng] [2024-05-17 08:02:32,510] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] 08:02:32,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:02:32,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:02:32,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_08-02-32.log] [testng] 08:02:32,511 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dd85d44 - End of configuration. [testng] [2024-05-17 08:02:32,593] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] 08:02:32,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:02:32,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:02:32,593 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_08-02-32.log] [testng] 08:02:32,594 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b32accd - End of configuration. [testng] [2024-05-17 08:02:32,680] [pool-1-thread-5] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] 08:02:32,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:02:32,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:02:32,681 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_08-02-32.log] [testng] 08:02:32,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@83aaade - End of configuration. [testng] [2024-05-17 08:02:32,937] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] 08:02:32,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:02:32,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:02:32,937 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_08-02-32.log] [testng] 08:02:32,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f6fecac - End of configuration. [testng] [2024-05-17 08:02:33,016] [pool-1-thread-3] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] 08:02:33,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:02:33,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:02:33,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_08-02-33.log] [testng] 08:02:33,017 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2798400e - End of configuration. [testng] [2024-05-17 08:02:33,036] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.oir: [testng] 08:02:33,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:02:33,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:02:33,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_08-02-33.log] [testng] 08:02:33,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@be0f8e0 - End of configuration. [testng] [2024-05-17 08:02:36,925] [pool-1-thread-11] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-05-17 08:02:37,364] [pool-1-thread-9] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-05-17 08:02:37,432] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-05-17 08:02:37,553] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-05-17 08:02:37,605] [pool-1-thread-12] Initializing /data/olympus/XYZt.vsi: [testng] [2024-05-17 08:02:37,642] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-05-17 08:02:37,916] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-05-17 08:02:37,960] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-05-17 08:02:38,280] [pool-1-thread-2] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-05-17 08:02:38,328] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-05-17 08:02:40,234] [pool-1-thread-12] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-05-17 08:02:40,503] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-05-17 08:02:44,965] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-05-17 08:02:45,077] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-05-17 08:02:45,148] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-05-17 08:02:45,259] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-05-17 08:02:45,315] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-05-17 08:02:46,247] [pool-1-thread-12] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-05-17 08:02:46,314] [pool-1-thread-5] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-05-17 08:02:46,737] [pool-1-thread-1] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-05-17 08:02:46,916] [pool-1-thread-8] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-05-17 08:02:46,965] [pool-1-thread-4] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-05-17 08:02:47,061] [pool-1-thread-2] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-05-17 08:02:47,350] [pool-1-thread-3] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-05-17 08:02:48,128] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-05-17 08:02:48,487] [pool-1-thread-1] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-05-17 08:03:14,181] [pool-1-thread-6] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-05-17 08:03:14,234] [pool-1-thread-10] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-05-17 08:03:15,083] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-05-17 08:03:15,131] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-05-17 08:03:15,211] [pool-1-thread-8] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-05-17 08:03:15,255] [pool-1-thread-11] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-05-17 08:03:15,432] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-05-17 08:03:15,877] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-05-17 08:03:16,450] [pool-1-thread-5] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-05-17 08:03:16,539] [pool-1-thread-11] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-05-17 08:03:16,728] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-05-17 08:03:16,876] [pool-1-thread-6] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-05-17 08:03:17,491] [pool-1-thread-8] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-05-17 08:03:17,575] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-05-17 08:03:17,747] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-05-17 08:03:18,694] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-05-17 08:03:18,915] [pool-1-thread-5] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-05-17 08:03:20,499] [pool-1-thread-2] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-05-17 08:03:21,169] [pool-1-thread-12] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-05-17 08:03:21,383] [pool-1-thread-3] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-05-17 08:03:21,630] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-05-17 08:03:21,788] [pool-1-thread-7] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-05-17 08:03:21,875] [pool-1-thread-4] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-05-17 08:03:22,789] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-05-17 08:03:23,106] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-05-17 08:03:23,317] [pool-1-thread-7] Initializing /data/qa-17919/f10187.oir: [testng] [2024-05-17 08:03:53,346] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-05-17 08:03:53,668] [pool-1-thread-8] Initializing /data/qa-17270/image1.oir: [testng] [2024-05-17 08:03:53,987] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-05-17 08:03:54,406] [pool-1-thread-4] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-05-17 08:03:54,564] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-05-17 08:03:54,883] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-05-17 08:03:54,970] [pool-1-thread-8] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-05-17 08:03:55,110] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-05-17 08:03:56,785] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-05-17 08:03:57,351] [pool-1-thread-3] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-05-17 08:03:58,605] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-05-17 08:03:58,674] [pool-1-thread-4] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-05-17 08:03:58,790] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-05-17 08:03:58,913] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-05-17 08:03:58,976] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-05-17 08:04:00,153] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-05-17 08:04:01,893] [pool-1-thread-8] Initializing 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08:05:13,001] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-05-17 08:05:15,107] [pool-1-thread-9] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-05-17 08:05:15,548] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-05-17 08:05:16,076] [pool-1-thread-5] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-05-17 08:05:16,757] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-05-17 08:05:17,132] [pool-1-thread-8] Initializing /data/qa-17917/f10010.oir: [testng] [2024-05-17 08:06:05,959] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-05-17 08:06:06,251] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-05-17 08:06:09,640] [pool-1-thread-9] Initializing 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[testng] [2024-05-17 08:06:29,839] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-05-17 08:06:30,995] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-05-17 08:06:44,493] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-05-17 08:06:52,650] [pool-1-thread-12] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-05-17 08:06:56,017] [pool-1-thread-4] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-05-17 08:06:56,055] [pool-1-thread-5] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-05-17 08:06:57,127] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-05-17 08:06:57,278] [pool-1-thread-5] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-05-17 08:06:58,461] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-05-17 08:06:59,146] [pool-1-thread-4] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-05-17 08:07:00,145] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-05-17 08:07:02,040] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-05-17 08:07:11,034] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-05-17 08:07:11,810] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-05-17 08:07:12,617] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-05-17 08:07:12,987] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-05-17 08:07:13,673] [pool-1-thread-11] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-05-17 08:07:14,391] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-05-17 08:07:15,156] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-05-17 08:07:16,380] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-05-17 08:07:17,913] [pool-1-thread-5] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-05-17 08:07:18,554] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-05-17 08:07:19,175] [pool-1-thread-5] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-05-17 08:07:19,780] [pool-1-thread-11] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-05-17 08:07:21,839] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-05-17 08:07:22,320] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-05-17 08:07:23,468] [pool-1-thread-5] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-05-17 08:07:24,095] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-05-17 08:07:24,600] [pool-1-thread-5] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-05-17 08:07:28,925] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-05-17 08:07:30,494] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-05-17 08:07:32,283] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-05-17 08:07:33,357] [pool-1-thread-11] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-05-17 08:09:38,695] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-05-17 08:09:56,391] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-05-17 08:09:57,000] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-05-17 08:09:58,284] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-05-17 08:09:59,601] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-05-17 08:10:01,285] [pool-1-thread-4] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-05-17 08:10:02,478] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-05-17 08:10:03,283] [pool-1-thread-4] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-05-17 08:10:04,476] [pool-1-thread-4] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-05-17 08:10:07,885] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-05-17 08:10:20,732] [pool-1-thread-5] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-05-17 08:10:22,081] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-05-17 08:10:24,328] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-05-17 08:10:26,620] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-05-17 08:10:28,799] [pool-1-thread-5] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-05-17 08:10:38,020] [pool-1-thread-3] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-05-17 08:10:39,250] [pool-1-thread-3] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-05-17 08:10:39,626] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-05-17 08:10:40,235] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-05-17 08:10:41,283] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-05-17 08:10:42,470] [pool-1-thread-3] Initializing /data/qa-16871/Clipboard.tif: [testng] 09:16:39,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:16:39,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:39,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_09-16-39.log] [testng] 09:16:39,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76b06e50 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 83 minutes 16 seconds Finished: SUCCESS