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Started by upstream project "BIOFORMATS-test-repo" build number 66 originally caused by: Started by upstream project "Trigger" build number 74 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins4375575189692721863.sh + '[' bigtiff = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9856_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:02:59,948 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:02:59,950 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 08:02:59,950 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:02:59,951 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:02:59,951 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:02:59,951 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:02:59,952 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:02:59,952 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:02:59,952 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:02:59,953 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:02:59,953 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:02:59,953 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:03:00,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:03:00,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:03:00,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:03:00,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:03:00,263 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:03:00,263 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:03:00,263 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:03:00,264 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:03:00,264 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 08:03:00,265 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 08:03:00,265 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 313 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-17 08:03:00,276] [main] java.version = 1.8.0_342 [testng] 08:03:00,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:03:00,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:00,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_08-03-00.log] [testng] 08:03:00,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-17 08:03:00,331] [main] testng.directory = /data [testng] [2024-05-17 08:03:00,331] [main] testng.configDirectory = /config [testng] [2024-05-17 08:03:00,344] [main] testng.multiplier = 1.0 [testng] [2024-05-17 08:03:00,344] [main] testng.in-memory = false [testng] [2024-05-17 08:03:00,344] [main] testng.allow-missing = false [testng] [2024-05-17 08:03:00,344] [main] user.language = en [testng] [2024-05-17 08:03:00,344] [main] user.country = ${user.country} [testng] [2024-05-17 08:03:00,345] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-17 08:03:01,091] [main] ---------------------------------------- [testng] [2024-05-17 08:03:01,091] [main] Total files: 14 [testng] [2024-05-17 08:03:01,091] [main] Scan time: 0.746 s (53 ms/file) [testng] [2024-05-17 08:03:01,091] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-17 08:03:15,281] [pool-1-thread-1] Initializing /data/samples/BigTIFFSubIFD4.tif: [testng] 08:03:15,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:03:15,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:15,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_08-03-15.log] [testng] 08:03:15,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35f91fa7 - End of configuration. [testng] [2024-05-17 08:03:15,379] [pool-1-thread-12] Initializing /data/carlsen/Olympics8-lzw.tif: [testng] 08:03:15,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:03:15,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:15,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-17_08-03-15.log] [testng] 08:03:15,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26252944 - End of configuration. [testng] [2024-05-17 08:03:15,442] [pool-1-thread-11] Initializing /data/colin/7S59P8I1_F00000012.btf: [testng] 08:03:15,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:03:15,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:15,444 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_08-03-15.log] [testng] 08:03:15,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20de349 - End of configuration. [testng] [2024-05-17 08:03:17,834] [pool-1-thread-10] Initializing /data/samples/BigTIFFLong8Tiles.tif: [testng] 08:03:17,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:03:17,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:17,835 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_08-03-17.log] [testng] 08:03:17,836 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14b0f5c4 - End of configuration. [testng] [2024-05-17 08:03:17,856] [pool-1-thread-9] Initializing /data/samples/Classic.tif: [testng] 08:03:17,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:03:17,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:17,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_08-03-17.log] [testng] 08:03:17,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a5de889 - End of configuration. [testng] [2024-05-17 08:03:17,882] [pool-1-thread-8] Initializing /data/carlsen/Olympics8.tif: [testng] 08:03:17,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:03:17,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:17,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_08-03-17.log] [testng] 08:03:17,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c2c2322 - End of configuration. [testng] [2024-05-17 08:03:17,928] [pool-1-thread-7] Initializing /data/samples/BigTIFFLong.tif: [testng] 08:03:17,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:03:17,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:17,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_08-03-17.log] [testng] 08:03:17,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@da29f52 - End of configuration. [testng] [2024-05-17 08:03:17,954] [pool-1-thread-6] Initializing /data/samples/BigTIFF.tif: [testng] 08:03:17,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:03:17,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:17,955 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_08-03-17.log] [testng] 08:03:17,956 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a09b359 - End of configuration. [testng] [2024-05-17 08:03:17,983] [pool-1-thread-5] Initializing /data/carlsen/Olympics8-raw.tif: [testng] 08:03:17,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:03:17,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:17,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_08-03-17.log] [testng] 08:03:17,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1315140d - End of configuration. [testng] [2024-05-17 08:03:18,024] [pool-1-thread-4] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif: [testng] 08:03:18,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:03:18,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:18,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_08-03-18.log] [testng] 08:03:18,025 |-INFO in ch.qos.logback.core.sift.SiftProcessor@364127bc - End of configuration. [testng] [2024-05-17 08:03:18,048] [pool-1-thread-3] Initializing /data/samples/BigTIFFLong8.tif: [testng] 08:03:18,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:03:18,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:18,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_08-03-18.log] [testng] 08:03:18,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5313f6bb - End of configuration. [testng] [2024-05-17 08:03:18,077] [pool-1-thread-2] Initializing /data/samples/BigTIFFSubIFD8.tif: [testng] 08:03:18,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:03:18,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:18,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_08-03-18.log] [testng] 08:03:18,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15f3344e - End of configuration. [testng] [2024-05-17 08:03:19,850] [pool-1-thread-6] Initializing /data/samples/BigTIFFMotorola.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 38 seconds Finished: SUCCESS