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Started by upstream project "BIOFORMATS-test-repo" build number 66 originally caused by: Started by upstream project "Trigger" build number 74 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins7171202863539013797.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9908_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:46:45,700 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:46:45,702 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 08:46:45,702 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:46:45,703 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:46:45,703 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:46:45,703 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:46:45,704 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:46:45,704 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:46:45,704 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:46:45,705 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:46:45,705 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:46:45,705 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:46:45,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:46:45,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:46:45,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:46:45,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:46:45,972 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:46:45,972 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:46:45,972 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:46:45,973 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:46:45,973 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 08:46:45,974 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 08:46:45,974 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 270 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-17 08:46:45,983] [main] java.version = 1.8.0_342 [testng] 08:46:45,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:46:45,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:46:46,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_08-46-46.log] [testng] 08:46:46,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-17 08:46:46,034] [main] testng.directory = /data [testng] [2024-05-17 08:46:46,034] [main] testng.configDirectory = /config [testng] [2024-05-17 08:46:46,047] [main] testng.multiplier = 1.0 [testng] [2024-05-17 08:46:46,047] [main] testng.in-memory = false [testng] [2024-05-17 08:46:46,047] [main] testng.allow-missing = false [testng] [2024-05-17 08:46:46,047] [main] user.language = en [testng] [2024-05-17 08:46:46,047] [main] user.country = ${user.country} [testng] [2024-05-17 08:46:46,047] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-17 08:46:46,449] [main] ---------------------------------------- [testng] [2024-05-17 08:46:46,450] [main] Total files: 19 [testng] [2024-05-17 08:46:46,450] [main] Scan time: 0.402 s (21 ms/file) [testng] [2024-05-17 08:46:46,450] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-17 08:46:48,187] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 08:46:48,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:46:48,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:46:48,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_08-46-48.log] [testng] 08:46:48,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@368c5b1f - End of configuration. [testng] [2024-05-17 08:46:48,220] [pool-1-thread-12] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] 08:46:48,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:46:48,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:46:48,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-17_08-46-48.log] [testng] 08:46:48,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fd3d5e1 - End of configuration. [testng] [2024-05-17 08:46:48,290] [pool-1-thread-11] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] 08:46:48,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:46:48,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:46:48,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_08-46-48.log] [testng] 08:46:48,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3745d1 - End of configuration. [testng] [2024-05-17 08:46:48,310] [pool-1-thread-10] Initializing /data/samples/100R PICT0001.MRW: [testng] 08:46:48,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:46:48,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:46:48,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_08-46-48.log] [testng] 08:46:48,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e5071e7 - End of configuration. [testng] [2024-05-17 08:46:48,334] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] 08:46:48,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:46:48,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:46:48,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_08-46-48.log] [testng] 08:46:48,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3916efee - End of configuration. [testng] [2024-05-17 08:46:48,359] [pool-1-thread-8] Initializing /data/samples/200R PICT0002.MRW: [testng] 08:46:48,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:46:48,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:46:48,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_08-46-48.log] [testng] 08:46:48,361 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26563289 - End of configuration. [testng] [2024-05-17 08:46:48,489] [pool-1-thread-7] Initializing /data/samples/1600R PICT0005.MRW: [testng] 08:46:48,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:46:48,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:46:48,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_08-46-48.log] [testng] 08:46:48,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@329dd019 - End of configuration. [testng] [2024-05-17 08:46:48,509] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] 08:46:48,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:46:48,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:46:48,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_08-46-48.log] [testng] 08:46:48,511 |-INFO in ch.qos.logback.core.sift.SiftProcessor@647953af - End of configuration. [testng] [2024-05-17 08:46:48,531] [pool-1-thread-5] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] 08:46:48,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:46:48,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:46:48,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_08-46-48.log] [testng] 08:46:48,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d0cbf14 - End of configuration. [testng] [2024-05-17 08:46:48,554] [pool-1-thread-4] Initializing /data/samples/400R PICT0003.MRW: [testng] 08:46:48,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:46:48,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:46:48,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_08-46-48.log] [testng] 08:46:48,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bb9dc74 - End of configuration. [testng] [2024-05-17 08:46:48,575] [pool-1-thread-3] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] 08:46:48,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:46:48,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:46:48,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_08-46-48.log] [testng] 08:46:48,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47a9500a - End of configuration. [testng] [2024-05-17 08:46:48,855] [pool-1-thread-2] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] 08:46:48,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:46:48,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:46:48,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_08-46-48.log] [testng] 08:46:48,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cfa8e5f - End of configuration. [testng] [2024-05-17 08:47:00,987] [pool-1-thread-8] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] [2024-05-17 08:47:01,009] [pool-1-thread-1] Initializing /data/samples/800R PICT0010.MRW: [testng] [2024-05-17 08:47:01,054] [pool-1-thread-7] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] [2024-05-17 08:47:01,104] [pool-1-thread-10] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] [2024-05-17 08:47:01,158] [pool-1-thread-11] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] [2024-05-17 08:47:01,204] [pool-1-thread-9] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] [2024-05-17 08:47:01,258] [pool-1-thread-6] Initializing /data/samples/3200R PICT0006.MRW: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 24 seconds Finished: SUCCESS