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Started by upstream project "BIOFORMATS-test-repo" build number 66 originally caused by: Started by upstream project "Trigger" build number 74 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins17667747779583825495.sh + '[' mng = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9921_merge_ci -v /uod/idr/repos/curated/mng:/data -v /uod/idr-scratch/merge-ci/curated/mng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:50:13,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:50:13,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:50:13,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:50:13,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:50:13,421 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:50:13,421 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:50:13,422 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:50:13,423 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:50:13,423 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 08:50:13,425 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 08:50:13,426 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 517 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-17 08:50:13,446] [main] java.version = 1.8.0_342 [testng] 08:50:13,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:50:13,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:50:13,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_08-50-13.log] [testng] 08:50:13,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-17 08:50:13,550] [main] testng.directory = /data [testng] [2024-05-17 08:50:13,551] [main] testng.configDirectory = /config [testng] [2024-05-17 08:50:13,573] [main] testng.multiplier = 1.0 [testng] [2024-05-17 08:50:13,573] [main] testng.in-memory = false [testng] [2024-05-17 08:50:13,574] [main] testng.allow-missing = false [testng] [2024-05-17 08:50:13,574] [main] user.language = en [testng] [2024-05-17 08:50:13,574] [main] user.country = ${user.country} [testng] [2024-05-17 08:50:13,574] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-17 08:50:15,670] [main] ---------------------------------------- [testng] [2024-05-17 08:50:15,670] [main] Total files: 78 [testng] [2024-05-17 08:50:15,670] [main] Scan time: 2.096 s (26 ms/file) [testng] [2024-05-17 08:50:15,670] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 78 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-17 08:50:32,272] [pool-1-thread-1] Initializing /data/images/I01SCRL.mng: [testng] 08:50:32,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:50:32,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:50:32,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_08-50-32.log] [testng] 08:50:32,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26d2ef - End of configuration. [testng] [2024-05-17 08:50:32,361] [pool-1-thread-12] Initializing /data/images/png/Delta-rgbEight.png: [testng] 08:50:32,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:50:32,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:50:32,364 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-17_08-50-32.log] [testng] 08:50:32,365 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f508706 - End of configuration. [testng] [2024-05-17 08:50:32,377] [pool-1-thread-11] Initializing /data/images/Delta-gray1.mng: [testng] 08:50:32,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:50:32,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:50:32,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_08-50-32.log] [testng] 08:50:32,381 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27d27db2 - End of configuration. [testng] [2024-05-17 08:50:32,413] [pool-1-thread-10] Initializing /data/images/MNGTERM0.mng: [testng] 08:50:32,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:50:32,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:50:32,416 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_08-50-32.log] [testng] 08:50:32,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@432a264 - End of configuration. [testng] [2024-05-17 08:50:32,443] [pool-1-thread-9] Initializing /data/images/PNGBASxx.mng: [testng] 08:50:32,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:50:32,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:50:32,444 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_08-50-32.log] [testng] 08:50:32,445 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6afbe3e2 - End of configuration. [testng] [2024-05-17 08:50:32,490] [pool-1-thread-8] Initializing /data/images/MNGTERM3-4.mng: [testng] 08:50:32,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:50:32,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:50:32,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_08-50-32.log] [testng] 08:50:32,492 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28296d6a - End of configuration. [testng] [2024-05-17 08:50:32,508] [pool-1-thread-7] Initializing /data/images/PNGGxxxx.mng: [testng] 08:50:32,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:50:32,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:50:32,509 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_08-50-32.log] [testng] 08:50:32,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@518fa4df - End of configuration. [testng] [2024-05-17 08:50:32,532] [pool-1-thread-6] Initializing /data/images/PROM-BASN-zfil.mng: [testng] 08:50:32,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:50:32,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:50:32,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_08-50-32.log] [testng] 08:50:32,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4317b915 - End of configuration. [testng] [2024-05-17 08:50:32,556] [pool-1-thread-5] Initializing /data/images/Delta-gray16.mng: [testng] 08:50:32,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:50:32,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:50:32,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_08-50-32.log] [testng] 08:50:32,557 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47058909 - End of configuration. [testng] [2024-05-17 08:50:32,578] [pool-1-thread-4] Initializing /data/images/png/PROM-zfil.png: [testng] 08:50:32,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:50:32,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:50:32,580 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_08-50-32.log] [testng] 08:50:32,580 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ef0813c - End of configuration. [testng] [2024-05-17 08:50:32,587] [pool-1-thread-3] Initializing /data/images/MNGTERM3-8.mng: [testng] 08:50:32,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:50:32,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:50:32,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_08-50-32.log] [testng] 08:50:32,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4946ec6a - End of configuration. [testng] [2024-05-17 08:50:32,609] [pool-1-thread-2] Initializing /data/images/Delta-rgb-a8w.mng: [testng] 08:50:32,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:50:32,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:50:32,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_08-50-32.log] [testng] 08:50:32,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21a0749b - End of configuration. [testng] [2024-05-17 08:50:35,041] [pool-1-thread-1] Initializing /data/images/Delta-gray-a16w.mng: [testng] [2024-05-17 08:50:35,075] [pool-1-thread-8] Initializing /data/images/png/Delta-gray-aEightB.png: [testng] [2024-05-17 08:50:35,078] [pool-1-thread-12] Initializing /data/images/MNGTERM3-1.mng: [testng] [2024-05-17 08:50:35,093] [pool-1-thread-10] Initializing /data/images/Delta-gray-a8w.mng: [testng] [2024-05-17 08:50:35,123] [pool-1-thread-3] Initializing /data/images/Delta-rgb-a16b.mng: [testng] [2024-05-17 08:50:35,158] [pool-1-thread-4] Initializing /data/images/Waves2.mng: [testng] [2024-05-17 08:50:35,171] [pool-1-thread-11] Initializing /data/images/png/MNGPAST16a.png: [testng] [2024-05-17 08:50:35,176] [pool-1-thread-5] Initializing /data/images/png/MNGPAST-eightB.png: [testng] [2024-05-17 08:50:35,180] [pool-1-thread-6] Initializing /data/images/MNGTERM3-2.mng: [testng] [2024-05-17 08:50:35,192] [pool-1-thread-7] Initializing /data/roger/Well C4_01.mng: [testng] [2024-05-17 08:50:38,192] [pool-1-thread-2] Initializing /data/images/png/Delta-gray-aEightW.png: [testng] [2024-05-17 08:50:38,196] [pool-1-thread-9] Initializing /data/images/home.mng: [testng] [2024-05-17 08:50:38,607] [pool-1-thread-11] Initializing /data/images/scrollOne.mng: [testng] [2024-05-17 08:50:38,623] [pool-1-thread-2] Initializing /data/roger/Well E6_01.mng: [testng] [2024-05-17 08:50:41,938] [pool-1-thread-8] Initializing /data/images/PNGCH-CC.mng: [testng] [2024-05-17 08:50:41,999] [pool-1-thread-5] Initializing /data/images/png/MNGPAST16b.png: [testng] [2024-05-17 08:50:42,062] [pool-1-thread-9] Initializing /data/images/MNGTERM1.mng: [testng] [2024-05-17 08:50:42,091] [pool-1-thread-4] Initializing /data/images/scrollTwo.mng: [testng] [2024-05-17 08:50:42,130] [pool-1-thread-12] Initializing /data/images/png/MNGPAST-eightA.png: [testng] [2024-05-17 08:50:42,141] [pool-1-thread-6] Initializing /data/images/png/PROM-repl.png: [testng] [2024-05-17 08:50:42,214] [pool-1-thread-10] Initializing /data/images/Delta-gray-a8b.mng: [testng] [2024-05-17 08:50:42,239] [pool-1-thread-1] Initializing /data/images/PROM-BASI-zfil.mng: [testng] [2024-05-17 08:50:42,257] [pool-1-thread-3] Initializing /data/images/png/Delta-gray-a16w.png: [testng] [2024-05-17 08:50:42,310] [pool-1-thread-11] Initializing /data/images/png/Delta-grayFour.png: [testng] [2024-05-17 08:50:42,313] [pool-1-thread-5] Initializing /data/images/Delta-gray8.mng: [testng] [2024-05-17 08:50:42,358] [pool-1-thread-8] Initializing /data/images/MNGTERM3-3.mng: [testng] [2024-05-17 08:50:42,378] [pool-1-thread-12] Initializing /data/roger/Well B3_01.mng: [testng] [2024-05-17 08:50:45,641] [pool-1-thread-6] Initializing /data/images/png/Delta-rgb-a16b.png: [testng] [2024-05-17 08:50:45,669] [pool-1-thread-3] Initializing /data/images/PNGFxxxx.mng: [testng] [2024-05-17 08:50:45,705] [pool-1-thread-11] Initializing /data/images/Waves1.mng: [testng] [2024-05-17 08:50:45,728] [pool-1-thread-9] Initializing /data/images/png/Delta-grayTwo.png: [testng] [2024-05-17 08:50:45,846] [pool-1-thread-6] Initializing /data/images/Delta-rgbEight.mng: [testng] [2024-05-17 08:50:45,861] [pool-1-thread-1] Initializing /data/images/MNGPAST_eightA.mng: [testng] [2024-05-17 08:50:45,882] [pool-1-thread-10] Initializing /data/images/Waves3.mng: [testng] [2024-05-17 08:50:45,893] [pool-1-thread-8] Initializing /data/images/MNGTERM3-6.mng: [testng] [2024-05-17 08:50:45,918] [pool-1-thread-5] Initializing /data/images/PROM-BASI-repl.mng: [testng] [2024-05-17 08:50:45,985] [pool-1-thread-9] Initializing /data/images/png/Delta-grayEight.png: [testng] [2024-05-17 08:50:45,992] [pool-1-thread-11] Initializing /data/images/Delta-gray4.mng: [testng] [2024-05-17 08:50:46,066] [pool-1-thread-3] Initializing /data/images/MNGTERM3-0.mng: [testng] [2024-05-17 08:50:46,110] [pool-1-thread-10] Initializing /data/images/buttonTwo.mng: [testng] [2024-05-17 08:50:46,121] [pool-1-thread-1] Initializing /data/images/MNGPAST16b.mng: [testng] [2024-05-17 08:50:46,129] [pool-1-thread-6] Initializing /data/images/png/Delta-rgb-aEightB.png: [testng] [2024-05-17 08:50:46,159] [pool-1-thread-9] Initializing /data/images/png/Delta-grayOne.png: [testng] [2024-05-17 08:50:46,176] [pool-1-thread-8] Initializing /data/images/png/Delta-rgb-aEightW.png: [testng] [2024-05-17 08:50:46,235] [pool-1-thread-4] Initializing /data/images/Delta-gray-a16b.mng: [testng] [2024-05-17 08:50:46,318] [pool-1-thread-6] Initializing /data/images/MNGPAST_eightB.mng: [testng] [2024-05-17 08:50:46,347] [pool-1-thread-11] Initializing /data/images/Delta-gray2.mng: [testng] [2024-05-17 08:50:46,365] [pool-1-thread-5] Initializing /data/images/png/Delta-rgb-a16w.png: [testng] [2024-05-17 08:50:46,394] [pool-1-thread-9] Initializing /data/images/PNGSxxxx.mng: [testng] [2024-05-17 08:50:46,445] [pool-1-thread-8] Initializing /data/images/Delta-rgb-a16w.mng: [testng] [2024-05-17 08:50:46,471] [pool-1-thread-10] Initializing /data/images/PROM-BASN-repl.mng: [testng] [2024-05-17 08:50:46,503] [pool-1-thread-1] Initializing /data/images/png/Delta-gray-a16b.png: [testng] [2024-05-17 08:50:46,506] [pool-1-thread-3] Initializing /data/images/png/Delta-rgb16.png: [testng] [2024-05-17 08:50:46,611] [pool-1-thread-6] Initializing /data/images/MNGPAST16a.mng: [testng] [2024-05-17 08:50:46,630] [pool-1-thread-5] Initializing /data/images/PNGCMSPx.mng: [testng] [2024-05-17 08:50:46,696] [pool-1-thread-3] Initializing /data/images/MNGTERM3-5.mng: [testng] [2024-05-17 08:50:46,717] [pool-1-thread-1] Initializing /data/images/scrollThree.mng: [testng] [2024-05-17 08:50:46,753] [pool-1-thread-11] Initializing /data/images/australia1.mng: [testng] [2024-05-17 08:50:46,789] [pool-1-thread-4] Initializing /data/images/buttonOne.mng: [testng] [2024-05-17 08:50:46,866] [pool-1-thread-6] Initializing /data/images/MNGTERM3-7.mng: [testng] [2024-05-17 08:50:46,947] [pool-1-thread-10] Initializing /data/images/DUTCH-two.mng: [testng] [2024-05-17 08:50:46,976] [pool-1-thread-8] Initializing /data/images/Delta-rgb16.mng: [testng] [2024-05-17 08:50:47,005] [pool-1-thread-3] Initializing /data/images/MNGTERM2.mng: [testng] [2024-05-17 08:50:47,030] [pool-1-thread-4] Initializing /data/images/Delta-rgb-a8b.mng: [testng] [2024-05-17 08:50:47,079] [pool-1-thread-1] Initializing /data/roger/Well D2_01.mng: [testng] [2024-05-17 08:50:49,668] [pool-1-thread-5] Initializing /data/images/png/Delta-graySixteen.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 4134, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 3 seconds Finished: SUCCESS