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Started by upstream project "BIOFORMATS-test-repo" build number 66 originally caused by: Started by upstream project "Trigger" build number 74 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins10336242306687508078.sh + '[' cellr = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_9963_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:21:45,990 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:21:45,992 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 09:21:45,992 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:21:45,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:21:45,993 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:21:45,993 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:21:45,994 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:21:45,994 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:21:45,994 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:21:45,994 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:21:45,994 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:21:45,994 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:21:46,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:21:46,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:21:46,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:21:46,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:21:46,246 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:21:46,246 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:21:46,246 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:21:46,247 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:21:46,247 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 09:21:46,248 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 09:21:46,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 254 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-17 09:21:46,257] [main] java.version = 1.8.0_342 [testng] 09:21:46,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:21:46,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:21:46,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-17_09-21-46.log] [testng] 09:21:46,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-17 09:21:46,309] [main] testng.directory = /data [testng] [2024-05-17 09:21:46,309] [main] testng.configDirectory = /config [testng] [2024-05-17 09:21:46,321] [main] testng.multiplier = 1.0 [testng] [2024-05-17 09:21:46,321] [main] testng.in-memory = false [testng] [2024-05-17 09:21:46,321] [main] testng.allow-missing = false [testng] [2024-05-17 09:21:46,321] [main] user.language = en [testng] [2024-05-17 09:21:46,322] [main] user.country = ${user.country} [testng] [2024-05-17 09:21:46,322] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-17 09:22:11,763] [main] ---------------------------------------- [testng] [2024-05-17 09:22:11,763] [main] Total files: 256 [testng] [2024-05-17 09:22:11,763] [main] Scan time: 25.441 s (99 ms/file) [testng] [2024-05-17 09:22:11,763] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-17 09:22:43,998] [pool-1-thread-1] Initializing /data/colin/08-10-09/08-10-09_d.mtb: [testng] 09:22:43,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:22:43,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:43,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-17_09-22-43.log] [testng] 09:22:44,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aef3d8c - End of configuration. [testng] [2024-05-17 09:22:48,012] [pool-1-thread-12] Initializing /data/viktorie/Structure.jpg: [testng] 09:22:48,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:22:48,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:48,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-17_09-22-48.log] [testng] 09:22:48,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c71504a - End of configuration. [testng] [2024-05-17 09:22:48,048] [pool-1-thread-11] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb: [testng] 09:22:48,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:22:48,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:48,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-17_09-22-48.log] [testng] 09:22:48,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9b6ee60 - End of configuration. [testng] [2024-05-17 09:22:48,091] [pool-1-thread-10] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb: [testng] 09:22:48,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:22:48,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:48,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-17_09-22-48.log] [testng] 09:22:48,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27104d59 - End of configuration. [testng] [2024-05-17 09:22:48,108] [pool-1-thread-9] Initializing /data/qa-17107/example2/example2_d.mtb: [testng] 09:22:48,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:22:48,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:48,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-17_09-22-48.log] [testng] 09:22:48,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d84ebaf - End of configuration. [testng] [2024-05-17 09:22:48,146] [pool-1-thread-8] Initializing /data/viktorie/090902/090902_d.mtb: [testng] 09:22:48,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:22:48,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:48,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-17_09-22-48.log] [testng] 09:22:48,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24ce8ae5 - End of configuration. [testng] [2024-05-17 09:22:48,167] [pool-1-thread-7] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb: [testng] 09:22:48,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:22:48,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:48,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-17_09-22-48.log] [testng] 09:22:48,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cf4e258 - End of configuration. [testng] [2024-05-17 09:22:49,729] [pool-1-thread-6] Initializing /data/viktorie/2Channels.tif: [testng] 09:22:49,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:22:49,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:49,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-17_09-22-49.log] [testng] 09:22:49,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6eeb840c - End of configuration. [testng] [2024-05-17 09:22:49,775] [pool-1-thread-5] Initializing /data/viktorie/test/test_d.mtb: [testng] 09:22:49,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:22:49,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:49,775 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-17_09-22-49.log] [testng] 09:22:49,776 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66a47fcb - End of configuration. [testng] [2024-05-17 09:22:49,799] [pool-1-thread-4] Initializing /data/colin/07-06-21/07-06-21_d.mtb: [testng] 09:22:49,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:22:49,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:49,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-17_09-22-49.log] [testng] 09:22:49,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b81ffc7 - End of configuration. [testng] [2024-05-17 09:22:49,922] [pool-1-thread-3] Initializing /data/clare/set_27_on_d.mtb: [testng] 09:22:49,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:22:49,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:49,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-17_09-22-49.log] [testng] 09:22:49,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55dfbf95 - End of configuration. [testng] [2024-05-17 09:22:50,519] [pool-1-thread-2] Initializing /data/kees/Mariaelena_d.mtb: [testng] 09:22:50,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:22:50,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:50,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-17_09-22-50.log] [testng] 09:22:50,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@207e4414 - End of configuration. [testng] [2024-05-17 09:22:52,500] [pool-1-thread-5] Initializing /data/qa-17107/plain/Plain_d.mtb: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 44 seconds Finished: SUCCESS