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Started by user devspace
Obtained Jenkinsfile from git https://github.com/snoopycrimecop/omero-build.git
[Pipeline] Start of Pipeline
[Pipeline] node
Running on testintegration in /home/omero/workspace/OMERO-build-build
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: NONE
No credentials specified
Cloning the remote Git repository
Cloning repository https://github.com/snoopycrimecop/omero-build.git
 > git init /home/omero/workspace/OMERO-build-build # timeout=10
Fetching upstream changes from https://github.com/snoopycrimecop/omero-build.git
 > git --version # timeout=10
 > git --version # 'git version 2.47.3'
 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/omero-build.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
Checking out Revision 673e3f098e5e36ab1c958ed80802fde2ae74ff10 (origin/merge_ci)
Commit message: "Update component versions"
 > git config remote.origin.url https://github.com/snoopycrimecop/omero-build.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse origin/merge_ci^{commit} # timeout=10
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 673e3f098e5e36ab1c958ed80802fde2ae74ff10 # timeout=10
 > git rev-list --no-walk 673e3f098e5e36ab1c958ed80802fde2ae74ff10 # timeout=10
Using shallow submodule update with depth 1
 > git remote # timeout=10
 > git submodule init # timeout=10
 > git submodule sync # timeout=10
 > git config --get remote.origin.url # timeout=10
 > git submodule init # timeout=10
 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
 > git config --get submodule.omero-model.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-model.path # timeout=10
 > git config --get submodule.omero-common.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-common.path # timeout=10
 > git config --get submodule.omero-romio.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-romio.path # timeout=10
 > git config --get submodule.omero-renderer.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-renderer.path # timeout=10
 > git config --get submodule.omero-server.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-server.path # timeout=10
 > git config --get submodule.omero-blitz.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-blitz.path # timeout=10
 > git config --get submodule.omero-gateway-java.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-gateway-java.path # timeout=10
 > git submodule update --init --recursive --depth=1 omero-model # timeout=10
 > git submodule update --init --recursive --depth=1 omero-common # timeout=10
 > git submodule update --init --recursive --depth=1 omero-romio # timeout=10
 > git submodule update --init --recursive --depth=1 omero-renderer # timeout=10
 > git submodule update --init --recursive --depth=1 omero-server # timeout=10
 > git submodule update --init --recursive --depth=1 omero-blitz # timeout=10
 > git submodule update --init --recursive --depth=1 omero-gateway-java # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Versions)
[Pipeline] copyArtifacts
Copied 1 artifact from "OMERO-gradle-plugins-build" build number 1
[Pipeline] sh
+ mkdir /home/omero/workspace/OMERO-build-build/build
+ cd /home/omero/workspace/OMERO-build-build/build
+ curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz
+ tar -zxf -
+ export PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/omero/workspace/OMERO-build-build/build/build-infra-master/
+ PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/omero/workspace/OMERO-build-build/build/build-infra-master/
+ cd ..
+ find . -name version.properties -exec cp '{}' . ';'
cp: './version.properties' and './version.properties' are the same file
+ test -e version.properties
+ foreach-get-version-as-property
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Build)
[Pipeline] sh
+ gradle --init-script init-ci.gradle publishToMavenLocal --refresh-dependencies
To honour the JVM settings for this build a single-use Daemon process will be forked. See https://docs.gradle.org/6.9.3/userguide/gradle_daemon.html#sec:disabling_the_daemon.
Daemon will be stopped at the end of the build 
> Task :omero-romio:processResources NO-SOURCE
> Task :omero-gateway-java:processResources NO-SOURCE
> Task :omero-renderer:processResources NO-SOURCE
> Task :omero-romio:generatePomFileForOmeroRomioPublication
> Task :omero-common:processResources
> Task :omero-renderer:generatePomFileForOmeroRendererPublication
> Task :omero-gateway-java:generatePomFileForOmeroGatewayPublication
> Task :omero-blitz:processResources
> Task :omero-blitz:generatePomFileForOmeroBlitzPublication
> Task :omero-common:processTestResources
> Task :omero-common:generatePomFileForOmeroCommonPublication
> Task :omero-romio:sourcesJar
> Task :omero-renderer:sourcesJar
> Task :omero-server:compileSlice
> Task :omero-model:generateEnumsPsql
> Task :omero-model:generateHibernatePsql
> Task :omero-gateway-java:sourcesJar
> Task :omero-common:sourcesJar
> Task :omero-server:processResources
> Task :omero-server:generatePomFileForOmeroServerPublication
> Task :omero-blitz:sourcesJar
> Task :omero-server:sourcesJar
> Task :omero-model:generateJavaPsql
> Task :omero-model:generateSqlPsql

> Task :omero-model:compileJava
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.

> Task :omero-model:processResources
> Task :omero-model:classes
> Task :omero-model:jar
> Task :omero-model:generateMetadataFileForOmeroModelPublication
> Task :omero-model:generatePomFileForOmeroModelPublication
> Task :omero-model:javadoc
> Task :omero-model:javadocJar
> Task :omero-model:sourcesJar
> Task :omero-model:publishOmeroModelPublicationToMavenLocal
> Task :omero-model:publishToMavenLocal

> Task :omero-common:compileJava
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.

> Task :omero-common:classes

> Task :omero-common:compileTestJava
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/OMEData.java:136: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        return getRandomNumber(l, new Integer(maximum));
                                  ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/OMEData.java:142: warning: [removal] Double(double) in Double has been deprecated and marked for removal
        return getRandomNumber(l, new Double(l.size() * percent));
                                  ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/OMEData.java:148: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        List result = getRandomNumber(l, new Integer(1));
                                         ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/OMEData.java:212: warning: [removal] Double(double) in Double has been deprecated and marked for removal
        return (new Double(value)).intValue();
                ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:133: warning: [removal] Double(double) in Double has been deprecated and marked for removal
                si[w].setGlobalMax(new Double(0.0));
                                   ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:134: warning: [removal] Double(double) in Double has been deprecated and marked for removal
                si[w].setGlobalMin(new Double(0.0));
                                   ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:137: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
                pl[w].setTheC(new Integer(w));
                              ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:138: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
                pl[w].setTheZ(new Integer(0));
                              ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:139: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
                pl[w].setTheT(new Integer(0));
                              ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:153: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        p.setSizeX(new Integer(1));
                   ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:154: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        p.setSizeY(new Integer(1));
                   ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:155: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        p.setSizeZ(new Integer(1));
                   ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:156: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        p.setSizeC(new Integer(1));
                   ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:157: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        p.setSizeT(new Integer(1));
                   ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:181: warning: [removal] Double(double) in Double has been deprecated and marked for removal
        binding.setCoefficient(new Double(1));
                               ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:182: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        binding.setAlpha(new Integer(1));
                         ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:183: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        binding.setBlue(new Integer(1));
                        ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:184: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        binding.setGreen(new Integer(1));
                         ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:185: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        binding.setRed(new Integer(1));
                       ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:187: warning: [removal] Double(double) in Double has been deprecated and marked for removal
        binding.setInputEnd(new Double(1.0));
                            ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:188: warning: [removal] Double(double) in Double has been deprecated and marked for removal
        binding.setInputStart(new Double(1.0));
                              ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:200: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        qdef.setBitResolution(new Integer(1));
                              ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:201: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        qdef.setCdEnd(new Integer(1));
                      ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:202: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        qdef.setCdStart(new Integer(1));
                        ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:205: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        def.setDefaultT(new Integer(1));
                        ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:206: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        def.setDefaultZ(new Integer(1));
                        ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:217: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        enhancement.setLowerLimit(new Integer(1));
                                  ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:218: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        enhancement.setPlanePrevious(new Integer(1));
                                     ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:219: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        enhancement.setPlaneSelected(new Integer(1));
                                     ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/ObjectFactory.java:220: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
        enhancement.setUpperLimit(new Integer(1));
                                  ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/Paths.java:37: warning: [removal] Long(long) in Long has been deprecated and marked for removal
    public final static Long EXISTS = new Long(-3);
                                      ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/Paths.java:39: warning: [removal] Long(long) in Long has been deprecated and marked for removal
    public final static Long WILDCARD = new Long(-2);
                                        ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/Paths.java:41: warning: [removal] Long(long) in Long has been deprecated and marked for removal
    public final static Long NULL_IMAGE = new Long(-1);
                                          ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/Paths.java:43: warning: [removal] Long(long) in Long has been deprecated and marked for removal
    public final static Long CG = new Long(0);
                                  ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/Paths.java:45: warning: [removal] Long(long) in Long has been deprecated and marked for removal
    public final static Long C = new Long(1);
                                 ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/Paths.java:47: warning: [removal] Long(long) in Long has been deprecated and marked for removal
    public final static Long I = new Long(2);
                                 ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/Paths.java:76: warning: [removal] Long(long) in Long has been deprecated and marked for removal
                singlePath = get(new Long(size() - 1));
                                 ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/Paths.java:91: warning: [removal] Long(long) in Long has been deprecated and marked for removal
            if (!removed.contains(new Long(t))) {
                                  ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/Paths.java:131: warning: [removal] Long(long) in Long has been deprecated and marked for removal
            Long N = new Long(n);
                     ^
/home/omero/workspace/OMERO-build-build/omero-common/src/test/java/ome/testing/TestUtils.java:16: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
            set.add(new Integer(ids[i]));
                    ^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
40 warnings

> Task :omero-common:testClasses
> Task :omero-common:jar
> Task :omero-common:generateMetadataFileForOmeroCommonPublication

> Task :omero-common:javadoc
/home/omero/workspace/OMERO-build-build/omero-common/src/main/java/ome/api/RawFileStore.java:81: warning: invalid input: '@see'
     * @see <a href="https://trac.openmicroscopy.org/ome/ticket/1651>1651</a>
       ^
/home/omero/workspace/OMERO-build-build/omero-common/src/main/java/ome/api/RawFileStore.java:82: warning: invalid input: '@see'
     * @see <a href="https://trac.openmicroscopy.org/ome/ticket/2161>2161</a>
       ^
2 warnings

> Task :omero-common:javadocJar
> Task :omero-common:publishOmeroCommonPublicationToMavenLocal
> Task :omero-common:publishToMavenLocal

> Task :omero-romio:compileJava
Note: /home/omero/workspace/OMERO-build-build/omero-romio/src/main/java/ome/io/bioformats/BfPixelBuffer.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.

> Task :omero-romio:classes
> Task :omero-romio:jar
> Task :omero-romio:generateMetadataFileForOmeroRomioPublication
> Task :omero-romio:javadoc
> Task :omero-romio:javadocJar
> Task :omero-romio:publishOmeroRomioPublicationToMavenLocal
> Task :omero-romio:publishToMavenLocal

> Task :omero-renderer:compileJava
Note: /home/omero/workspace/OMERO-build-build/omero-renderer/src/main/java/omeis/providers/re/Renderer.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.

> Task :omero-renderer:classes
> Task :omero-renderer:jar
> Task :omero-renderer:generateMetadataFileForOmeroRendererPublication
> Task :omero-renderer:javadoc
> Task :omero-renderer:javadocJar
> Task :omero-renderer:publishOmeroRendererPublicationToMavenLocal
> Task :omero-renderer:publishToMavenLocal

> Task :omero-server:compileJava
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/logic/MetadataImpl.java:697: warning: [removal] Long(long) in Long has been deprecated and marked for removal
    	if (list != null) return new Long(list.size());
    	                         ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/logic/MetadataImpl.java:967: warning: [removal] Long(long) in Long has been deprecated and marked for removal
    	if (s != null) return new Long(s.size());
    	                      ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/services/RawFileBean.java:352: warning: [removal] Long(long) in Long has been deprecated and marked for removal
            id = new Long(fileId);
                 ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/services/RawPixelsBean.java:261: warning: [removal] Long(long) in Long has been deprecated and marked for removal
            id = new Long(pixelsId);
                 ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/services/SVGRasterizer.java:126: warning: [removal] Float(float) in Float has been deprecated and marked for removal
        hints.put(JPEGTranscoder.KEY_QUALITY, new Float(quality));
                                              ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/services/SVGRasterizer.java:135: warning: [removal] Float(float) in Float has been deprecated and marked for removal
        hints.put(ImageTranscoder.KEY_WIDTH, new Float(width));
                                             ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/services/SVGRasterizer.java:144: warning: [removal] Float(float) in Float has been deprecated and marked for removal
        hints.put(ImageTranscoder.KEY_HEIGHT, new Float(height));
                                              ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/services/SVGRasterizer.java:167: warning: [removal] Float(float) in Float has been deprecated and marked for removal
                  new Float(px2mm));
                  ^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
8 warnings

> Task :omero-server:classes
> Task :omero-server:jar
> Task :omero-server:generateMetadataFileForOmeroServerPublication
> Task :omero-blitz:importDatabaseTypes
> Task :omero-blitz:importMappings

> Task :omero-server:javadoc
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/security/SecuritySystem.java:240: warning: invalid input: '@see'
     * @see <a
       ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/security/SecuritySystem.java:242: warning: invalid input: '@see'
     * @see <a
       ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/security/SecuritySystem.java:244: warning: invalid input: '@see'
     * @see <a
       ^

> Task :omero-blitz:generateCombinedPsql
> Task :omero-blitz:generateIce
> Task :omero-blitz:copySliceFiles

> Task :omero-server:javadoc
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/api/local/LocalSession.java:19: warning: Tag @link: reference not found: #getSession()
     * Otherwise, behaves identically to {@link #getSession()}.
                                         ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/security/SecuritySystem.java:240: warning: invalid input: '@see'
     * @see <a
       ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/security/SecuritySystem.java:242: warning: invalid input: '@see'
     * @see <a
       ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/security/SecuritySystem.java:244: warning: invalid input: '@see'
     * @see <a
       ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/security/SecuritySystem.java:240: warning: invalid input: '@see'
     * @see <a
       ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/security/SecuritySystem.java:242: warning: invalid input: '@see'
     * @see <a
       ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/security/SecuritySystem.java:244: warning: invalid input: '@see'
     * @see <a
       ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/api/local/LocalSession.java:19: warning: Tag @link: reference not found: #getSession()
     * Otherwise, behaves identically to {@link #getSession()}.
                                         ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/security/SecuritySystem.java:240: warning: invalid input: '@see'
     * @see <a
       ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/security/SecuritySystem.java:242: warning: invalid input: '@see'
     * @see <a
       ^
/home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/security/SecuritySystem.java:244: warning: invalid input: '@see'
     * @see <a
       ^
14 warnings

> Task :omero-server:javadocJar
> Task :omero-server:publishOmeroServerPublicationToMavenLocal
> Task :omero-server:publishToMavenLocal
> Task :omero-blitz:compileSlice
> Task :omero-blitz:generateIceMapPsql
> Task :omero-blitz:generateJava
> Task :omero-blitz:generateModelObjectFactoryRegistryPsql
> Task :omero-blitz:generatePython
> Task :omero-blitz:pythonTaskOmero
> Task :omero-blitz:pythonTaskOmeroApi
> Task :omero-blitz:pythonTaskOmeroCmd
> Task :omero-blitz:pythonTaskOmeroModel
> Task :omero-blitz:pythonTaskGroup
> Task :omero-blitz:generateObjectFactoryRegistrarPsql
> Task :omero-blitz:pythonZip
> Task :omero-blitz:compileIcedoc
> Task :omero-blitz:zipIcedoc
> Task :omero-blitz:compileJava
/home/omero/workspace/OMERO-build-build/omero-blitz/src/main/java/loci/ome/io/OmeroReader.java:271: warning: [removal] Long(String) in Long has been deprecated and marked for removal
                groupID = new Long(val);
                          ^
/home/omero/workspace/OMERO-build-build/omero-blitz/src/main/java/loci/ome/io/OmeroReader.java:321: warning: [removal] Long(long) in Long has been deprecated and marked for removal
                        !new Long(defaultGroup.getId().getValue()).equals(groupID))
                         ^
/home/omero/workspace/OMERO-build-build/omero-blitz/src/main/java/loci/ome/io/OmeroReader.java:720: warning: [removal] Double(double) in Double has been deprecated and marked for removal
        store.setLineX1(new Double(x1), roiNum, shapeNum);
                        ^
/home/omero/workspace/OMERO-build-build/omero-blitz/src/main/java/loci/ome/io/OmeroReader.java:721: warning: [removal] Double(double) in Double has been deprecated and marked for removal
        store.setLineX2(new Double(x2), roiNum, shapeNum);
                        ^
/home/omero/workspace/OMERO-build-build/omero-blitz/src/main/java/loci/ome/io/OmeroReader.java:722: warning: [removal] Double(double) in Double has been deprecated and marked for removal
        store.setLineY1(new Double(y1), roiNum, shapeNum);
                        ^
/home/omero/workspace/OMERO-build-build/omero-blitz/src/main/java/loci/ome/io/OmeroReader.java:723: warning: [removal] Double(double) in Double has been deprecated and marked for removal
        store.setLineY2(new Double(y2), roiNum, shapeNum);
                        ^
/home/omero/workspace/OMERO-build-build/omero-blitz/src/main/java/loci/ome/io/OmeroReader.java:851: warning: [removal] Float(String) in Float has been deprecated and marked for removal
                x.add(new Float(t.nextToken()));
                      ^
/home/omero/workspace/OMERO-build-build/omero-blitz/src/main/java/loci/ome/io/OmeroReader.java:852: warning: [removal] Float(String) in Float has been deprecated and marked for removal
                y.add(new Float(t.nextToken()));
                      ^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
8 warnings

> Task :omero-blitz:classes
> Task :omero-blitz:jar
> Task :omero-blitz:generateMetadataFileForOmeroBlitzPublication
> Task :omero-gateway-java:compileJava
> Task :omero-blitz:javadoc
> Task :omero-blitz:javadocJar
> Task :omero-blitz:publishOmeroBlitzPublicationToMavenLocal
> Task :omero-blitz:publishToMavenLocal

> Task :omero-gateway-java:compileJava
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/DataObject.java:281: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
            m.setVersion(new Integer(version));
                         ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/DatasetData.java:314: warning: [removal] Long(long) in Long has been deprecated and marked for removal
            annotationCount = annotationCount == null ? null : new Long(
                                                               ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/DatasetData.java:321: warning: [removal] Long(long) in Long has been deprecated and marked for removal
            annotationCount = annotationCount == null ? null : new Long(
                                                               ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/ImageData.java:508: warning: [removal] Long(long) in Long has been deprecated and marked for removal
            annotationCount = annotationCount == null ? null : new Long(
                                                               ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/ImageData.java:515: warning: [removal] Long(long) in Long has been deprecated and marked for removal
            annotationCount = annotationCount == null ? null : new Long(
                                                               ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/ShapeData.java:116: warning: [removal] Double(String) in Double has been deprecated and marked for removal
                        new Point2D.Double(new Double(t.nextToken()), new Double(
                                           ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/ShapeData.java:116: warning: [removal] Double(String) in Double has been deprecated and marked for removal
                        new Point2D.Double(new Double(t.nextToken()), new Double(
                                                                      ^
/home/omero/workspace/OMERO-build-build/omero-gateway-java/src/main/java/omero/gateway/model/ShapeSettingsData.java:276: warning: [removal] Double(String) in Double has been deprecated and marked for removal
            dashes[i] = new Double(values[i]);
                        ^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
8 warnings

> Task :omero-gateway-java:classes
> Task :omero-gateway-java:jar
> Task :omero-gateway-java:generateMetadataFileForOmeroGatewayPublication
> Task :omero-gateway-java:javadoc
> Task :omero-gateway-java:javadocJar
> Task :omero-gateway-java:publishOmeroGatewayPublicationToMavenLocal
> Task :omero-gateway-java:publishToMavenLocal
> Task :publishToMavenLocal

Deprecated Gradle features were used in this build, making it incompatible with Gradle 7.0.
Use '--warning-mode all' to show the individual deprecation warnings.
See https://docs.gradle.org/6.9.3/userguide/command_line_interface.html#sec:command_line_warnings

BUILD SUCCESSFUL in 6m 3s
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Deploy)
[Pipeline] sh
+ gradle --init-script init-ci.gradle publish
To honour the JVM settings for this build a single-use Daemon process will be forked. See https://docs.gradle.org/6.9.3/userguide/gradle_daemon.html#sec:disabling_the_daemon.
Daemon will be stopped at the end of the build 
> Task :omero-gateway-java:processResources NO-SOURCE
> Task :omero-renderer:processResources NO-SOURCE
> Task :omero-romio:processResources NO-SOURCE
> Task :omero-common:processResources UP-TO-DATE
> Task :omero-blitz:processResources UP-TO-DATE
> Task :omero-model:generateEnumsPsql UP-TO-DATE
> Task :omero-model:generateHibernatePsql UP-TO-DATE
> Task :omero-common:processTestResources UP-TO-DATE
> Task :omero-blitz:generatePomFileForOmeroBlitzPublication
> Task :omero-gateway-java:generatePomFileForOmeroGatewayPublication
> Task :omero-renderer:generatePomFileForOmeroRendererPublication
> Task :omero-romio:generatePomFileForOmeroRomioPublication
> Task :omero-model:generateJavaPsql UP-TO-DATE
> Task :omero-common:generatePomFileForOmeroCommonPublication
> Task :omero-model:generateSqlPsql UP-TO-DATE
> Task :omero-renderer:sourcesJar UP-TO-DATE
> Task :omero-romio:sourcesJar UP-TO-DATE
> Task :omero-gateway-java:sourcesJar UP-TO-DATE
> Task :omero-common:sourcesJar UP-TO-DATE
> Task :omero-model:compileJava UP-TO-DATE
> Task :omero-model:processResources UP-TO-DATE
> Task :omero-model:classes UP-TO-DATE
> Task :omero-model:jar UP-TO-DATE
> Task :omero-server:compileSlice
> Task :omero-server:processResources UP-TO-DATE
> Task :omero-server:generatePomFileForOmeroServerPublication
> Task :omero-model:generateMetadataFileForOmeroModelPublication
> Task :omero-model:generatePomFileForOmeroModelPublication
> Task :omero-model:javadoc UP-TO-DATE
> Task :omero-model:javadocJar UP-TO-DATE
> Task :omero-model:sourcesJar UP-TO-DATE
> Task :omero-server:sourcesJar
> Task :omero-blitz:sourcesJar
> Task :omero-model:publishOmeroModelPublicationToMaven2Repository FAILED
> Task :omero-common:compileJava UP-TO-DATE
> Task :omero-common:classes UP-TO-DATE
> Task :omero-common:compileTestJava UP-TO-DATE
> Task :omero-common:testClasses UP-TO-DATE
> Task :omero-common:jar UP-TO-DATE
> Task :omero-common:generateMetadataFileForOmeroCommonPublication
> Task :omero-common:javadoc UP-TO-DATE
> Task :omero-common:javadocJar UP-TO-DATE
> Task :omero-common:publishOmeroCommonPublicationToMaven2Repository FAILED
> Task :omero-romio:compileJava UP-TO-DATE
> Task :omero-romio:classes UP-TO-DATE
> Task :omero-romio:jar UP-TO-DATE
> Task :omero-romio:generateMetadataFileForOmeroRomioPublication
> Task :omero-romio:javadoc UP-TO-DATE
> Task :omero-romio:javadocJar UP-TO-DATE
> Task :omero-romio:publishOmeroRomioPublicationToMaven2Repository FAILED
> Task :omero-renderer:compileJava UP-TO-DATE
> Task :omero-renderer:classes UP-TO-DATE
> Task :omero-renderer:jar UP-TO-DATE
> Task :omero-renderer:generateMetadataFileForOmeroRendererPublication
> Task :omero-renderer:javadoc UP-TO-DATE
> Task :omero-renderer:javadocJar UP-TO-DATE
> Task :omero-renderer:publishOmeroRendererPublicationToMaven2Repository FAILED
> Task :omero-server:compileJava UP-TO-DATE
> Task :omero-server:classes UP-TO-DATE
> Task :omero-server:jar UP-TO-DATE
> Task :omero-server:generateMetadataFileForOmeroServerPublication
> Task :omero-blitz:importDatabaseTypes UP-TO-DATE
> Task :omero-blitz:importMappings UP-TO-DATE
> Task :omero-blitz:generateCombinedPsql UP-TO-DATE
> Task :omero-blitz:generateIce UP-TO-DATE
> Task :omero-server:javadoc UP-TO-DATE
> Task :omero-server:javadocJar UP-TO-DATE
> Task :omero-blitz:copySliceFiles UP-TO-DATE
> Task :omero-server:publishOmeroServerPublicationToMaven2Repository
> Task :omero-server:publish
> Task :omero-blitz:compileSlice
> Task :omero-blitz:generateIceMapPsql UP-TO-DATE
> Task :omero-blitz:generateJava UP-TO-DATE
> Task :omero-blitz:generateModelObjectFactoryRegistryPsql UP-TO-DATE
> Task :omero-blitz:generatePython UP-TO-DATE
> Task :omero-blitz:pythonTaskOmero
> Task :omero-blitz:pythonTaskOmeroApi
> Task :omero-blitz:pythonTaskOmeroCmd
> Task :omero-blitz:pythonTaskOmeroModel UP-TO-DATE
> Task :omero-blitz:pythonTaskGroup
> Task :omero-blitz:generateObjectFactoryRegistrarPsql UP-TO-DATE
> Task :omero-blitz:pythonZip UP-TO-DATE
> Task :omero-blitz:compileIcedoc UP-TO-DATE
> Task :omero-blitz:zipIcedoc UP-TO-DATE
> Task :omero-blitz:compileJava UP-TO-DATE
> Task :omero-blitz:classes UP-TO-DATE
> Task :omero-blitz:jar UP-TO-DATE
> Task :omero-blitz:generateMetadataFileForOmeroBlitzPublication
> Task :omero-blitz:javadoc UP-TO-DATE
> Task :omero-blitz:javadocJar UP-TO-DATE
> Task :omero-blitz:publishOmeroBlitzPublicationToMaven2Repository FAILED
> Task :omero-gateway-java:compileJava UP-TO-DATE
> Task :omero-gateway-java:classes UP-TO-DATE
> Task :omero-gateway-java:jar UP-TO-DATE
> Task :omero-gateway-java:generateMetadataFileForOmeroGatewayPublication
> Task :omero-gateway-java:javadoc UP-TO-DATE
> Task :omero-gateway-java:javadocJar UP-TO-DATE
> Task :omero-gateway-java:publishOmeroGatewayPublicationToMaven2Repository FAILED

FAILURE: Build completed with 6 failures.

1: Task failed with an exception.
-----------
* What went wrong:
Execution failed for task ':omero-common:publishOmeroCommonPublicationToMaven2Repository'.
> Failed to publish publication 'omeroCommon' to repository 'maven2'
   > Could not PUT 'http://nexus:8081/nexus/repository/maven-internal/org/openmicroscopy/omero-common/5.7.4-SNAPSHOT/maven-metadata.xml'. Received status code 500 from server: Server Error

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights.
==============================================================================

2: Task failed with an exception.
-----------
* What went wrong:
Execution failed for task ':omero-romio:publishOmeroRomioPublicationToMaven2Repository'.
> Failed to publish publication 'omeroRomio' to repository 'maven2'
   > Could not PUT 'http://nexus:8081/nexus/repository/maven-internal/org/openmicroscopy/omero-romio/5.8.4-SNAPSHOT/maven-metadata.xml'. Received status code 500 from server: Server Error

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights.
==============================================================================

3: Task failed with an exception.
-----------
* What went wrong:
Execution failed for task ':omero-blitz:publishOmeroBlitzPublicationToMaven2Repository'.
> Failed to publish publication 'omeroBlitz' to repository 'maven2'
   > Could not PUT 'http://nexus:8081/nexus/repository/maven-internal/org/openmicroscopy/omero-blitz/5.8.4-SNAPSHOT/maven-metadata.xml'. Received status code 500 from server: Server Error

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights.
==============================================================================

4: Task failed with an exception.
-----------
* What went wrong:
Execution failed for task ':omero-model:publishOmeroModelPublicationToMaven2Repository'.
> Failed to publish publication 'omeroModel' to repository 'maven2'
   > Could not PUT 'http://nexus:8081/nexus/repository/maven-internal/org/openmicroscopy/omero-model/5.7.4-SNAPSHOT/maven-metadata.xml'. Received status code 500 from server: Server Error

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights.
==============================================================================

5: Task failed with an exception.
-----------
* What went wrong:
Execution failed for task ':omero-renderer:publishOmeroRendererPublicationToMaven2Repository'.
> Failed to publish publication 'omeroRenderer' to repository 'maven2'
   > Could not PUT 'http://nexus:8081/nexus/repository/maven-internal/org/openmicroscopy/omero-renderer/5.6.4-SNAPSHOT/maven-metadata.xml'. Received status code 500 from server: Server Error

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights.
==============================================================================

6: Task failed with an exception.
-----------
* What went wrong:
Execution failed for task ':omero-gateway-java:publishOmeroGatewayPublicationToMaven2Repository'.
> Failed to publish publication 'omeroGateway' to repository 'maven2'
   > Could not PUT 'http://nexus:8081/nexus/repository/maven-internal/org/openmicroscopy/omero-gateway/5.10.5-SNAPSHOT/maven-metadata.xml'. Received status code 500 from server: Server Error

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights.
==============================================================================

* Get more help at https://help.gradle.org

Deprecated Gradle features were used in this build, making it incompatible with Gradle 7.0.
Use '--warning-mode all' to show the individual deprecation warnings.
See https://docs.gradle.org/6.9.3/userguide/command_line_interface.html#sec:command_line_warnings

BUILD FAILED in 42s
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] deleteDir
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: FAILURE