Started by upstream project "Trigger" build number 50 originally caused by: Started by timer Obtained Jenkinsfile from git https://github.com/snoopycrimecop/omero-build.git [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-build-build [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: NONE No credentials specified Cloning the remote Git repository Avoid second fetch Checking out Revision 87c114f0dc509b220ce0e006a3fcae29aaad8371 (origin/merge_ci) Commit message: "Update component versions" First time build. Skipping changelog. Using shallow submodule update with depth 1 Cloning repository https://github.com/snoopycrimecop/omero-build.git > git init /home/omero/workspace/OMERO-build-build # timeout=10 Fetching upstream changes from https://github.com/snoopycrimecop/omero-build.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/omero-build.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/snoopycrimecop/omero-build.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse origin/merge_ci^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 87c114f0dc509b220ce0e006a3fcae29aaad8371 # timeout=10 > git rev-list --no-walk e8b17115da11b8ad3e58928b67c51da75bc35488 # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-model.url # timeout=10 > git config -f .gitmodules --get submodule.omero-model.path # timeout=10 > git config --get submodule.omero-common.url # timeout=10 > git config -f .gitmodules --get submodule.omero-common.path # timeout=10 > git config --get submodule.omero-romio.url # timeout=10 > git config -f .gitmodules --get submodule.omero-romio.path # timeout=10 > git config --get submodule.omero-renderer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-renderer.path # timeout=10 > git config --get submodule.omero-server.url # timeout=10 > git config -f .gitmodules --get submodule.omero-server.path # timeout=10 > git config --get submodule.omero-blitz.url # timeout=10 > git config -f .gitmodules --get submodule.omero-blitz.path # timeout=10 > git config --get submodule.omero-gateway-java.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gateway-java.path # timeout=10 > git submodule update --init --recursive --depth=1 omero-model # timeout=10 > git submodule update --init --recursive --depth=1 omero-common # timeout=10 > git submodule update --init --recursive --depth=1 omero-romio # timeout=10 > git submodule update --init --recursive --depth=1 omero-renderer # timeout=10 > git submodule update --init --recursive --depth=1 omero-server # timeout=10 > git submodule update --init --recursive --depth=1 omero-blitz # timeout=10 > git submodule update --init --recursive --depth=1 omero-gateway-java # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Versions) [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-gradle-plugins-build" build number 40 [Pipeline] sh + mkdir /home/omero/workspace/OMERO-build-build/build + cd /home/omero/workspace/OMERO-build-build/build + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + export PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/omero/workspace/OMERO-build-build/build/build-infra-master/ + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/omero/workspace/OMERO-build-build/build/build-infra-master/ + cd .. + find . -name version.properties -exec cp '{}' . ';' cp: './version.properties' and './version.properties' are the same file + test -e version.properties + foreach-get-version-as-property [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Build) [Pipeline] sh + gradle --init-script init-ci.gradle publishToMavenLocal --refresh-dependencies To honour the JVM settings for this build a single-use Daemon process will be forked. See https://docs.gradle.org/6.9.3/userguide/gradle_daemon.html#sec:disabling_the_daemon. Daemon will be stopped at the end of the build Maven publication 'omeroCommon' pom metadata warnings (silence with 'suppressPomMetadataWarningsFor(variant)'): - Variant runtimeElements: - contains dependencies that will produce a pom file that cannot be consumed by a Maven client. - jmock:jmock:1.+ declared with a Maven incompatible version notation These issues indicate information that is lost in the published 'pom' metadata file, which may be an issue if the published library is consumed by an old Gradle version or Apache Maven. The 'module' metadata file, which is used by Gradle 6+ is not affected. > Task :omero-gateway-java:processResources NO-SOURCE > Task :omero-renderer:processResources NO-SOURCE > Task :omero-romio:processResources NO-SOURCE > Task :omero-gateway-java:generatePomFileForOmeroGatewayPublication > Task :omero-common:processResources > Task :omero-renderer:generatePomFileForOmeroRendererPublication > Task :omero-romio:generatePomFileForOmeroRomioPublication > Task :omero-common:generatePomFileForOmeroCommonPublication > Task :omero-blitz:processResources > Task :omero-blitz:generatePomFileForOmeroBlitzPublication > Task :omero-romio:sourcesJar > Task :omero-renderer:sourcesJar > Task :omero-server:compileSlice > Task :omero-model:generateEnumsPsql > Task :omero-model:generateHibernatePsql > Task :omero-gateway-java:sourcesJar > Task :omero-common:sourcesJar > Task :omero-server:processResources > Task :omero-server:generatePomFileForOmeroServerPublication > Task :omero-blitz:sourcesJar > Task :omero-server:sourcesJar > Task :omero-model:generateJavaPsql > Task :omero-model:generateSqlPsql > Task :omero-model:compileJava Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. > Task :omero-model:processResources > Task :omero-model:classes > Task :omero-model:jar > Task :omero-model:generateMetadataFileForOmeroModelPublication > Task :omero-model:generatePomFileForOmeroModelPublication > Task :omero-model:javadoc > Task :omero-model:javadocJar > Task :omero-model:sourcesJar > Task :omero-model:publishOmeroModelPublicationToMavenLocal > Task :omero-model:publishToMavenLocal > Task :omero-common:compileJava Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. > Task :omero-common:classes > Task :omero-common:jar > Task :omero-common:generateMetadataFileForOmeroCommonPublication > Task :omero-common:javadoc > Task :omero-common:javadocJar > Task :omero-common:publishOmeroCommonPublicationToMavenLocal > Task :omero-common:publishToMavenLocal > Task :omero-romio:compileJava Note: /home/omero/workspace/OMERO-build-build/omero-romio/src/main/java/ome/io/bioformats/BfPixelBuffer.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. > Task :omero-romio:classes > Task :omero-romio:jar > Task :omero-romio:generateMetadataFileForOmeroRomioPublication > Task :omero-romio:javadoc > Task :omero-romio:javadocJar > Task :omero-romio:publishOmeroRomioPublicationToMavenLocal > Task :omero-romio:publishToMavenLocal > Task :omero-renderer:compileJava Note: /home/omero/workspace/OMERO-build-build/omero-renderer/src/main/java/omeis/providers/re/Renderer.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. > Task :omero-renderer:classes > Task :omero-renderer:jar > Task :omero-renderer:generateMetadataFileForOmeroRendererPublication > Task :omero-renderer:javadoc > Task :omero-renderer:javadocJar > Task :omero-renderer:publishOmeroRendererPublicationToMavenLocal > Task :omero-renderer:publishToMavenLocal > Task :omero-server:compileJava Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. > Task :omero-server:classes > Task :omero-server:jar > Task :omero-server:generateMetadataFileForOmeroServerPublication > Task :omero-blitz:importDatabaseTypes > Task :omero-blitz:importMappings > Task :omero-server:javadoc /home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/api/local/LocalSession.java:19: warning - Tag @link: reference not found: #getSession() > Task :omero-blitz:generateCombinedPsql > Task :omero-blitz:generateIce > Task :omero-blitz:copySliceFiles > Task :omero-server:javadoc /home/omero/workspace/OMERO-build-build/omero-server/src/main/java/ome/api/local/LocalSession.java:19: warning - Tag @link: reference not found: #getSession() 2 warnings > Task :omero-server:javadocJar > Task :omero-server:publishOmeroServerPublicationToMavenLocal > Task :omero-server:publishToMavenLocal > Task :omero-blitz:compileSlice > Task :omero-blitz:generateIceMapPsql > Task :omero-blitz:generateJava > Task :omero-blitz:generateModelObjectFactoryRegistryPsql > Task :omero-blitz:generatePython > Task :omero-blitz:pythonTaskOmero > Task :omero-blitz:pythonTaskOmeroApi > Task :omero-blitz:pythonTaskOmeroCmd > Task :omero-blitz:pythonTaskOmeroModel > Task :omero-blitz:pythonTaskGroup > Task :omero-blitz:generateObjectFactoryRegistrarPsql > Task :omero-blitz:pythonZip > Task :omero-blitz:compileIcedoc > Task :omero-blitz:zipIcedoc > Task :omero-blitz:compileJava Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. > Task :omero-blitz:classes > Task :omero-blitz:jar > Task :omero-blitz:generateMetadataFileForOmeroBlitzPublication > Task :omero-gateway-java:compileJava > Task :omero-blitz:javadoc > Task :omero-blitz:javadocJar > Task :omero-blitz:publishOmeroBlitzPublicationToMavenLocal > Task :omero-blitz:publishToMavenLocal > Task :omero-gateway-java:compileJava Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. > Task :omero-gateway-java:classes > Task :omero-gateway-java:jar > Task :omero-gateway-java:generateMetadataFileForOmeroGatewayPublication > Task :omero-gateway-java:javadoc > Task :omero-gateway-java:javadocJar > Task :omero-gateway-java:publishOmeroGatewayPublicationToMavenLocal > Task :omero-gateway-java:publishToMavenLocal > Task :publishToMavenLocal Deprecated Gradle features were used in this build, making it incompatible with Gradle 7.0. Use '--warning-mode all' to show the individual deprecation warnings. See https://docs.gradle.org/6.9.3/userguide/command_line_interface.html#sec:command_line_warnings BUILD SUCCESSFUL in 5m 19s [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Deploy) [Pipeline] sh + gradle --init-script init-ci.gradle publish To honour the JVM settings for this build a single-use Daemon process will be forked. See https://docs.gradle.org/6.9.3/userguide/gradle_daemon.html#sec:disabling_the_daemon. Daemon will be stopped at the end of the build Maven publication 'omeroCommon' pom metadata warnings (silence with 'suppressPomMetadataWarningsFor(variant)'): - Variant runtimeElements: - contains dependencies that will produce a pom file that cannot be consumed by a Maven client. - jmock:jmock:1.+ declared with a Maven incompatible version notation These issues indicate information that is lost in the published 'pom' metadata file, which may be an issue if the published library is consumed by an old Gradle version or Apache Maven. The 'module' metadata file, which is used by Gradle 6+ is not affected. > Task :omero-romio:processResources NO-SOURCE > Task :omero-gateway-java:processResources NO-SOURCE > Task :omero-renderer:processResources NO-SOURCE > Task :omero-model:generateEnumsPsql UP-TO-DATE > Task :omero-common:processResources UP-TO-DATE > Task :omero-blitz:processResources UP-TO-DATE > Task :omero-model:generateHibernatePsql UP-TO-DATE > Task :omero-blitz:generatePomFileForOmeroBlitzPublication > Task :omero-common:generatePomFileForOmeroCommonPublication > Task :omero-gateway-java:generatePomFileForOmeroGatewayPublication > Task :omero-romio:generatePomFileForOmeroRomioPublication > Task :omero-renderer:generatePomFileForOmeroRendererPublication > Task :omero-romio:sourcesJar UP-TO-DATE > Task :omero-renderer:sourcesJar UP-TO-DATE > Task :omero-model:generateJavaPsql UP-TO-DATE > Task :omero-gateway-java:sourcesJar UP-TO-DATE > Task :omero-common:sourcesJar UP-TO-DATE > Task :omero-model:generateSqlPsql UP-TO-DATE > Task :omero-model:compileJava UP-TO-DATE > Task :omero-model:processResources UP-TO-DATE > Task :omero-model:classes UP-TO-DATE > Task :omero-model:jar UP-TO-DATE > Task :omero-server:compileSlice > Task :omero-server:processResources UP-TO-DATE > Task :omero-server:generatePomFileForOmeroServerPublication > Task :omero-model:generateMetadataFileForOmeroModelPublication > Task :omero-model:generatePomFileForOmeroModelPublication > Task :omero-model:javadoc UP-TO-DATE > Task :omero-model:javadocJar UP-TO-DATE > Task :omero-model:sourcesJar UP-TO-DATE > Task :omero-server:sourcesJar > Task :omero-model:publishOmeroModelPublicationToMavenRepository > Task :omero-model:publish > Task :omero-common:compileJava UP-TO-DATE > Task :omero-common:classes UP-TO-DATE > Task :omero-common:jar UP-TO-DATE > Task :omero-common:generateMetadataFileForOmeroCommonPublication > Task :omero-common:javadoc UP-TO-DATE > Task :omero-common:javadocJar UP-TO-DATE > Task :omero-common:publishOmeroCommonPublicationToMavenRepository > Task :omero-common:publish > Task :omero-romio:compileJava UP-TO-DATE > Task :omero-romio:classes UP-TO-DATE > Task :omero-romio:jar UP-TO-DATE > Task :omero-romio:generateMetadataFileForOmeroRomioPublication > Task :omero-romio:javadoc UP-TO-DATE > Task :omero-romio:javadocJar UP-TO-DATE > Task :omero-romio:publishOmeroRomioPublicationToMavenRepository > Task :omero-romio:publish > Task :omero-renderer:compileJava UP-TO-DATE > Task :omero-renderer:classes UP-TO-DATE > Task :omero-renderer:jar UP-TO-DATE > Task :omero-renderer:generateMetadataFileForOmeroRendererPublication > Task :omero-renderer:javadoc UP-TO-DATE > Task :omero-renderer:javadocJar UP-TO-DATE > Task :omero-blitz:sourcesJar > Task :omero-renderer:publishOmeroRendererPublicationToMavenRepository > Task :omero-renderer:publish > Task :omero-server:compileJava UP-TO-DATE > Task :omero-server:classes UP-TO-DATE > Task :omero-server:jar UP-TO-DATE > Task :omero-blitz:importDatabaseTypes UP-TO-DATE > Task :omero-server:generateMetadataFileForOmeroServerPublication > Task :omero-blitz:importMappings UP-TO-DATE > Task :omero-blitz:generateCombinedPsql UP-TO-DATE > Task :omero-blitz:generateIce UP-TO-DATE > Task :omero-server:javadoc UP-TO-DATE > Task :omero-server:javadocJar UP-TO-DATE > Task :omero-blitz:copySliceFiles UP-TO-DATE > Task :omero-server:publishOmeroServerPublicationToMavenRepository > Task :omero-server:publish > Task :omero-blitz:compileSlice > Task :omero-blitz:generateIceMapPsql UP-TO-DATE > Task :omero-blitz:generateJava UP-TO-DATE > Task :omero-blitz:generateModelObjectFactoryRegistryPsql UP-TO-DATE > Task :omero-blitz:generatePython UP-TO-DATE > Task :omero-blitz:pythonTaskOmero > Task :omero-blitz:pythonTaskOmeroApi > Task :omero-blitz:pythonTaskOmeroCmd > Task :omero-blitz:pythonTaskOmeroModel UP-TO-DATE > Task :omero-blitz:pythonTaskGroup > Task :omero-blitz:generateObjectFactoryRegistrarPsql UP-TO-DATE > Task :omero-blitz:pythonZip UP-TO-DATE > Task :omero-blitz:compileIcedoc UP-TO-DATE > Task :omero-blitz:zipIcedoc UP-TO-DATE > Task :omero-blitz:compileJava UP-TO-DATE > Task :omero-blitz:classes UP-TO-DATE > Task :omero-blitz:jar UP-TO-DATE > Task :omero-blitz:generateMetadataFileForOmeroBlitzPublication > Task :omero-blitz:javadoc UP-TO-DATE > Task :omero-blitz:javadocJar UP-TO-DATE > Task :omero-gateway-java:compileJava UP-TO-DATE > Task :omero-gateway-java:classes UP-TO-DATE > Task :omero-gateway-java:jar UP-TO-DATE > Task :omero-gateway-java:generateMetadataFileForOmeroGatewayPublication > Task :omero-gateway-java:javadoc UP-TO-DATE > Task :omero-gateway-java:javadocJar UP-TO-DATE > Task :omero-gateway-java:publishOmeroGatewayPublicationToMavenRepository > Task :omero-gateway-java:publish > Task :omero-blitz:publishOmeroBlitzPublicationToMavenRepository > Task :omero-blitz:publish > Task :publish Deprecated Gradle features were used in this build, making it incompatible with Gradle 7.0. Use '--warning-mode all' to show the individual deprecation warnings. See https://docs.gradle.org/6.9.3/userguide/command_line_interface.html#sec:command_line_warnings BUILD SUCCESSFUL in 28s [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] deleteDir [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS