Skip to content
Failed

Console Output

Started by upstream project "Trigger" build number 164
originally caused by:
 Started by timer
[Pipeline] Start of Pipeline
[Pipeline] node
Running on testintegration in /home/omero/workspace/OMERO-build-push
[Pipeline] {
[Pipeline] library
Loading library recursiveMerge@master
Attempting to resolve master from remote references...
 > git --version # timeout=10
 > git --version # 'git version 2.47.3'
 > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2
The recommended git tool is: NONE
No credentials specified
 > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-build-push/workspace@libs/80042be2aab2f4c47851263660cdf7971582cd0b3548009ec2196c6f3069ef1a/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Fetching without tags
Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git
 > git --version # timeout=10
 > git --version # 'git version 2.47.3'
 > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10
Commit message: "Merge pull request #18 from jburel/python_311"
 > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10
[Pipeline] checkout
The recommended git tool is: NONE
No credentials specified
Fetching changes from the remote Git repository
Checking out Revision 19f38808b37ab8d6b17ea425d13e9d97c8f3f782 (refs/remotes/origin/master)
Commit message: "Merge pull request #265 from ome/dependabot/submodules/omero-model-f544fae"
 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build-push/.git # timeout=10
 > git config remote.origin.url https://github.com/ome/omero-build.git # timeout=10
Fetching upstream changes from https://github.com/ome/omero-build.git
 > git --version # timeout=10
 > git --version # 'git version 2.47.3'
 > git fetch --tags --force --progress -- https://github.com/ome/omero-build.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 19f38808b37ab8d6b17ea425d13e9d97c8f3f782 # timeout=10
 > git rev-list --no-walk b332e8fb1dc0cccd0a9488648ec6f25c3432ef7b # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
 > git submodule foreach --recursive git reset --hard # timeout=10
 > git submodule foreach --recursive git clean -fdx # timeout=10
 > git remote # timeout=10
 > git submodule init # timeout=10
 > git submodule sync # timeout=10
 > git config --get remote.origin.url # timeout=10
 > git submodule init # timeout=10
 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
 > git config --get submodule.omero-model.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-model.path # timeout=10
 > git config --get submodule.omero-common.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-common.path # timeout=10
 > git config --get submodule.omero-romio.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-romio.path # timeout=10
 > git config --get submodule.omero-renderer.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-renderer.path # timeout=10
 > git config --get submodule.omero-server.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-server.path # timeout=10
 > git config --get submodule.omero-blitz.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-blitz.path # timeout=10
 > git config --get submodule.omero-gateway-java.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-gateway-java.path # timeout=10
 > git config --get submodule.omero-zarr-pixel-buffer.url # timeout=10
 > git config -f .gitmodules --get submodule.omero-zarr-pixel-buffer.path # timeout=10
 > git submodule update --init --recursive omero-model # timeout=10
 > git submodule update --init --recursive omero-common # timeout=10
 > git submodule update --init --recursive omero-romio # timeout=10
ERROR: Checkout failed
hudson.plugins.git.GitException: Command "git submodule update --init --recursive omero-zarr-pixel-buffer" returned status code 1:
stdout: 
stderr: error: pathspec 'omero-zarr-pixel-buffer' did not match any file(s) known to git

	at org.jenkinsci.plugins.gitclient.CliGitAPIImpl.launchCommandIn(CliGitAPIImpl.java:2864)
	at org.jenkinsci.plugins.gitclient.CliGitAPIImpl.launchCommandWithCredentials(CliGitAPIImpl.java:2204)
	at org.jenkinsci.plugins.gitclient.CliGitAPIImpl$7.lambda$execute$0(CliGitAPIImpl.java:1579)
	at com.google.common.util.concurrent.TrustedListenableFutureTask$TrustedFutureInterruptibleTask.runInterruptibly(TrustedListenableFutureTask.java:128)
	at com.google.common.util.concurrent.InterruptibleTask.run(InterruptibleTask.java:74)
	at com.google.common.util.concurrent.TrustedListenableFutureTask.run(TrustedListenableFutureTask.java:80)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at com.google.common.util.concurrent.DirectExecutorService.execute(DirectExecutorService.java:52)
	at java.base/java.util.concurrent.ExecutorCompletionService.submit(ExecutorCompletionService.java:184)
	at org.jenkinsci.plugins.gitclient.cgit.GitCommandsExecutor.submitRemainingCommand(GitCommandsExecutor.java:77)
	at org.jenkinsci.plugins.gitclient.cgit.GitCommandsExecutor.invokeAll(GitCommandsExecutor.java:70)
Also:   hudson.remoting.Channel$CallSiteStackTrace: Remote call to JNLP4-connect connection from devspace-testintegration-1.devspace_omero-network/172.18.0.12:48676
		at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1916)
		at hudson.remoting.UserRequest$ExceptionResponse.retrieve(UserRequest.java:384)
		at hudson.remoting.Channel.call(Channel.java:1108)
		at PluginClassLoader for git-client//org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler.execute(RemoteGitImpl.java:155)
		at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(Unknown Source)
		at java.base/java.lang.reflect.Method.invoke(Unknown Source)
		at PluginClassLoader for git-client//org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler.invoke(RemoteGitImpl.java:140)
		at PluginClassLoader for git-client/jdk.proxy89/jdk.proxy89.$Proxy185.execute(Unknown Source)
		at PluginClassLoader for git//hudson.plugins.git.extensions.impl.SubmoduleOption.onCheckoutCompleted(SubmoduleOption.java:196)
		at PluginClassLoader for git//hudson.plugins.git.GitSCM._checkout(GitSCM.java:1395)
		at PluginClassLoader for git//hudson.plugins.git.GitSCM.checkout(GitSCM.java:1277)
		at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep.checkout(SCMStep.java:136)
		at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep$StepExecutionImpl.run(SCMStep.java:101)
		at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep$StepExecutionImpl.run(SCMStep.java:88)
		at PluginClassLoader for workflow-step-api//org.jenkinsci.plugins.workflow.steps.SynchronousNonBlockingStepExecution.lambda$start$0(SynchronousNonBlockingStepExecution.java:49)
		at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
		at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
		at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
		at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
		at java.base/java.lang.Thread.run(Unknown Source)
Caused: hudson.plugins.git.GitException
	at org.jenkinsci.plugins.gitclient.cgit.GitCommandsExecutor.checkResult(GitCommandsExecutor.java:89)
	at org.jenkinsci.plugins.gitclient.cgit.GitCommandsExecutor.invokeAll(GitCommandsExecutor.java:69)
	at org.jenkinsci.plugins.gitclient.cgit.GitCommandsExecutor.invokeAll(GitCommandsExecutor.java:47)
	at org.jenkinsci.plugins.gitclient.CliGitAPIImpl$7.execute(CliGitAPIImpl.java:1582)
	at org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler$GitCommandMasterToSlaveCallable.call(RemoteGitImpl.java:173)
	at org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler$GitCommandMasterToSlaveCallable.call(RemoteGitImpl.java:164)
	at hudson.remoting.UserRequest.perform(UserRequest.java:211)
	at hudson.remoting.UserRequest.perform(UserRequest.java:54)
	at hudson.remoting.Request$2.run(Request.java:377)
	at hudson.remoting.InterceptingExecutorService.lambda$wrap$0(InterceptingExecutorService.java:78)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at hudson.remoting.Engine$1.lambda$newThread$0(Engine.java:137)
	at java.base/java.lang.Thread.run(Thread.java:840)
Caused: java.io.IOException: Could not perform submodule update
	at PluginClassLoader for git//hudson.plugins.git.extensions.impl.SubmoduleOption.onCheckoutCompleted(SubmoduleOption.java:201)
	at PluginClassLoader for git//hudson.plugins.git.GitSCM._checkout(GitSCM.java:1395)
	at PluginClassLoader for git//hudson.plugins.git.GitSCM.checkout(GitSCM.java:1277)
	at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep.checkout(SCMStep.java:136)
	at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep$StepExecutionImpl.run(SCMStep.java:101)
	at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep$StepExecutionImpl.run(SCMStep.java:88)
	at PluginClassLoader for workflow-step-api//org.jenkinsci.plugins.workflow.steps.SynchronousNonBlockingStepExecution.lambda$start$0(SynchronousNonBlockingStepExecution.java:49)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
	at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
	at java.base/java.lang.Thread.run(Unknown Source)
ERROR: Maximum checkout retry attempts reached, aborting
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
hudson.plugins.git.GitException: Command "git submodule update --init --recursive omero-zarr-pixel-buffer" returned status code 1:
stdout: 
stderr: error: pathspec 'omero-zarr-pixel-buffer' did not match any file(s) known to git

	at org.jenkinsci.plugins.gitclient.CliGitAPIImpl.launchCommandIn(CliGitAPIImpl.java:2864)
	at org.jenkinsci.plugins.gitclient.CliGitAPIImpl.launchCommandWithCredentials(CliGitAPIImpl.java:2204)
	at org.jenkinsci.plugins.gitclient.CliGitAPIImpl$7.lambda$execute$0(CliGitAPIImpl.java:1579)
	at com.google.common.util.concurrent.TrustedListenableFutureTask$TrustedFutureInterruptibleTask.runInterruptibly(TrustedListenableFutureTask.java:128)
	at com.google.common.util.concurrent.InterruptibleTask.run(InterruptibleTask.java:74)
	at com.google.common.util.concurrent.TrustedListenableFutureTask.run(TrustedListenableFutureTask.java:80)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at com.google.common.util.concurrent.DirectExecutorService.execute(DirectExecutorService.java:52)
	at java.base/java.util.concurrent.ExecutorCompletionService.submit(ExecutorCompletionService.java:184)
	at org.jenkinsci.plugins.gitclient.cgit.GitCommandsExecutor.submitRemainingCommand(GitCommandsExecutor.java:77)
	at org.jenkinsci.plugins.gitclient.cgit.GitCommandsExecutor.invokeAll(GitCommandsExecutor.java:70)
Also:   hudson.remoting.Channel$CallSiteStackTrace: Remote call to JNLP4-connect connection from devspace-testintegration-1.devspace_omero-network/172.18.0.12:48676
		at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1916)
		at hudson.remoting.UserRequest$ExceptionResponse.retrieve(UserRequest.java:384)
		at hudson.remoting.Channel.call(Channel.java:1108)
		at PluginClassLoader for git-client//org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler.execute(RemoteGitImpl.java:155)
		at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(Unknown Source)
		at java.base/java.lang.reflect.Method.invoke(Unknown Source)
		at PluginClassLoader for git-client//org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler.invoke(RemoteGitImpl.java:140)
		at PluginClassLoader for git-client/jdk.proxy89/jdk.proxy89.$Proxy185.execute(Unknown Source)
		at PluginClassLoader for git//hudson.plugins.git.extensions.impl.SubmoduleOption.onCheckoutCompleted(SubmoduleOption.java:196)
		at PluginClassLoader for git//hudson.plugins.git.GitSCM._checkout(GitSCM.java:1395)
		at PluginClassLoader for git//hudson.plugins.git.GitSCM.checkout(GitSCM.java:1277)
		at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep.checkout(SCMStep.java:136)
		at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep$StepExecutionImpl.run(SCMStep.java:101)
		at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep$StepExecutionImpl.run(SCMStep.java:88)
		at PluginClassLoader for workflow-step-api//org.jenkinsci.plugins.workflow.steps.SynchronousNonBlockingStepExecution.lambda$start$0(SynchronousNonBlockingStepExecution.java:49)
		at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
		at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
		at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
		at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
		at java.base/java.lang.Thread.run(Unknown Source)
Caused: hudson.plugins.git.GitException
	at org.jenkinsci.plugins.gitclient.cgit.GitCommandsExecutor.checkResult(GitCommandsExecutor.java:89)
	at org.jenkinsci.plugins.gitclient.cgit.GitCommandsExecutor.invokeAll(GitCommandsExecutor.java:69)
	at org.jenkinsci.plugins.gitclient.cgit.GitCommandsExecutor.invokeAll(GitCommandsExecutor.java:47)
	at org.jenkinsci.plugins.gitclient.CliGitAPIImpl$7.execute(CliGitAPIImpl.java:1582)
	at org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler$GitCommandMasterToSlaveCallable.call(RemoteGitImpl.java:173)
	at org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler$GitCommandMasterToSlaveCallable.call(RemoteGitImpl.java:164)
	at hudson.remoting.UserRequest.perform(UserRequest.java:211)
	at hudson.remoting.UserRequest.perform(UserRequest.java:54)
	at hudson.remoting.Request$2.run(Request.java:377)
	at hudson.remoting.InterceptingExecutorService.lambda$wrap$0(InterceptingExecutorService.java:78)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at hudson.remoting.Engine$1.lambda$newThread$0(Engine.java:137)
	at java.base/java.lang.Thread.run(Thread.java:840)
Also:   org.jenkinsci.plugins.workflow.actions.ErrorAction$ErrorId: e12f1e54-b36a-4dad-8977-30a46fe88a94
Caused: java.io.IOException: Could not perform submodule update
	at PluginClassLoader for git//hudson.plugins.git.extensions.impl.SubmoduleOption.onCheckoutCompleted(SubmoduleOption.java:201)
	at PluginClassLoader for git//hudson.plugins.git.GitSCM._checkout(GitSCM.java:1395)
	at PluginClassLoader for git//hudson.plugins.git.GitSCM.checkout(GitSCM.java:1277)
	at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep.checkout(SCMStep.java:136)
	at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep$StepExecutionImpl.run(SCMStep.java:101)
	at PluginClassLoader for workflow-scm-step//org.jenkinsci.plugins.workflow.steps.scm.SCMStep$StepExecutionImpl.run(SCMStep.java:88)
	at PluginClassLoader for workflow-step-api//org.jenkinsci.plugins.workflow.steps.SynchronousNonBlockingStepExecution.lambda$start$0(SynchronousNonBlockingStepExecution.java:49)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
	at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
	at java.base/java.lang.Thread.run(Unknown Source)
Finished: FAILURE