09:53:00Started by upstream project "Trigger" build number 13009:53:00originally caused by:
09:53:00 Started by user devspace09:53:00Running as SYSTEM
09:53:00Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
09:53:00The recommended git tool is: NONE
09:53:00No credentials specified
09:53:00 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
09:53:00Fetching changes from the remote Git repository
09:53:00 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
09:53:00Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git09:53:00 > git --version # timeout=10
09:53:00 > git --version # 'git version 2.47.3'
09:53:00 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
09:53:01 > git rev-parse origin/merge_ci^{commit} # timeout=10
09:53:01Checking out Revision 818412a3a5d2efe1bf0a059fa900e39da3ff25c5 (origin/merge_ci)
09:53:01 > git config core.sparsecheckout # timeout=10
09:53:01 > git checkout -f 818412a3a5d2efe1bf0a059fa900e39da3ff25c5 # timeout=10
09:53:01Commit message: "Add version.properties to etc/omero.properties"
09:53:01 > git rev-list --no-walk 116d0d2bd769b759728107266b4c596ee52b553c # timeout=10
09:53:01Cleaning workspace
09:53:01 > git rev-parse --verify HEAD # timeout=10
09:53:01Resetting working tree
09:53:01 > git reset --hard # timeout=10
09:53:01 > git clean -fdx # timeout=10
09:53:01Copied 6 artifacts from "OMERO-python-superbuild-build" build number 9609:53:01[OMERO-build] $ /bin/bash -xe /tmp/jenkins16173053989765373232.sh
09:53:01+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
09:53:01+ cd src
09:53:01+ export OMERO_BRANCH=merge_ci
09:53:01+ OMERO_BRANCH=merge_ci
09:53:01+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
09:53:01+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
09:53:01+ source /home/omero/settings.env
09:53:01++ OMERO_DB_HOST=pg
09:53:01++ OMERO_DB_USER=postgres
09:53:01++ OMERO_DB_PASS=
09:53:01++ OMERO_ROOT_PASS=omero
09:53:01++ OMERO_DATA_DIR=/OMERO
09:53:01++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:53:01+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
09:53:05+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl09:53:05Collecting zeroc-ice==3.6.5
09:53:06 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
09:53:09 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 6.9 MB/s eta 0:00:00
09:53:09Installing collected packages: zeroc-ice
09:53:10Successfully installed zeroc-ice-3.6.5
09:53:1009:53:10[notice] A new release of pip available: 22.3.1 -> 26.0.1
09:53:10[notice] To update, run: python3.11 -m pip install --upgrade pip
09:53:10+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
09:53:10Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
09:53:11Collecting setuptools<66
09:53:11 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
09:53:11Collecting omero-py
09:53:11 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
09:53:11Collecting appdirs
09:53:11 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:53:11Collecting future
09:53:11 Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:53:12Collecting numpy<3,>=2
09:53:12 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
09:53:12Collecting Pillow>=10.0.0
09:53:12 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
09:53:12Collecting PyYAML
09:53:12 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
09:53:12Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
09:53:12Collecting requests
09:53:12 Using cached requests-2.33.1-py3-none-any.whl (64 kB)
09:53:12Collecting portalocker
09:53:12 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
09:53:13Collecting charset_normalizer<4,>=2
09:53:13 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB)
09:53:13Collecting idna<4,>=2.5
09:53:13 Using cached idna-3.11-py3-none-any.whl (71 kB)
09:53:13Collecting urllib3<3,>=1.26
09:53:13 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
09:53:13Collecting certifi>=2023.5.7
09:53:13 Using cached certifi-2026.2.25-py3-none-any.whl (153 kB)
09:53:13Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
09:53:13 Attempting uninstall: setuptools
09:53:13 Found existing installation: setuptools 65.5.1
09:53:13 Uninstalling setuptools-65.5.1:
09:53:13 Successfully uninstalled setuptools-65.5.1
09:53:18Successfully installed Pillow-12.2.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.2.25 charset_normalizer-3.4.7 future-1.0.0 idna-3.11 numpy-2.4.4 omero-py-5.22.1 portalocker-3.2.0 requests-2.33.1 setuptools-65.7.0 urllib3-2.6.3
09:53:1809:53:18[notice] A new release of pip available: 22.3.1 -> 26.0.1
09:53:18[notice] To update, run: python3.11 -m pip install --upgrade pip
09:53:19+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
09:53:19++ deactivate nondestructive
09:53:19++ '[' -n '' ']'
09:53:19++ '[' -n '' ']'
09:53:19++ hash -r
09:53:19++ '[' -n '' ']'
09:53:19++ unset VIRTUAL_ENV
09:53:19++ unset VIRTUAL_ENV_PROMPT
09:53:19++ '[' '!' nondestructive = nondestructive ']'
09:53:19++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
09:53:19++ export VIRTUAL_ENV
09:53:19++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:53:19++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:53:19++ export PATH
09:53:19++ '[' -n '' ']'
09:53:19++ '[' -z '' ']'
09:53:19++ _OLD_VIRTUAL_PS1=
09:53:19++ PS1='(omero-virtualenv) '
09:53:19++ export PS1
09:53:19++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
09:53:19++ export VIRTUAL_ENV_PROMPT
09:53:19++ hash -r
09:53:19+ source docs/hudson/OMERO.sh
09:53:19++ set -e
09:53:19++ set -u
09:53:19++ set -x
09:53:19++ source docs/hudson/functions.sh
09:53:19++ echo Building merge_ci
09:53:19Building merge_ci
09:53:19++ python3 ./build.py build-dev release-all
09:53:19Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:53:1909:53:19check-ivy:
09:53:19Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
09:53:19Created dir: /home/omero/workspace/OMERO-build/src/target
09:53:19:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:53:19:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:53:2009:53:20build-scons:
09:53:20Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:53:20No sub-builds to iterate on
09:53:20Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:53:2009:53:20buildlist:
09:53:20:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:53:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:53:2009:53:20clean:
09:53:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:53:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:53:2109:53:21python-clean:
09:53:21WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:53:21/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-596-818412a3a5-ice36-b100') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:53:21 warnings.warn(
09:53:21running clean
09:53:21Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
09:53:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:53:2109:53:21python-clean:
09:53:21WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:53:21/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-596-818412a3a5-ice36-b100') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:53:21 warnings.warn(
09:53:21running clean
09:53:21Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
09:53:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:53:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:53:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:53:2109:53:21python-clean:
09:53:21WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:53:21/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-596-818412a3a5-ice36-b100') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:53:21 warnings.warn(
09:53:21running clean
09:53:21Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
09:53:21Deleting directory /home/omero/workspace/OMERO-build/src/target
09:53:2209:53:22build-scons:
09:53:22Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:53:2209:53:22build:
09:53:22No sub-builds to iterate on
09:53:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:53:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:53:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:53:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:53:2209:53:22tools-init:
09:53:22no-op
09:53:2209:53:22retrieve:
09:53:22:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:53:22:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:53:23WARNING: An illegal reflective access operation has occurred
09:53:23WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
09:53:23WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
09:53:23WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
09:53:23WARNING: All illegal access operations will be denied in a future release
09:54:1009:54:10prepare:
09:54:10Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:54:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
09:54:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
09:54:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:54:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:54:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:54:10Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
09:54:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:54:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:54:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:54:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:54:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:54:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:54:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:54:10Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:54:1009:54:10pre-compile:
09:54:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:54:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:54:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:54:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:54:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:54:1009:54:10compile:
09:54:10no-op
09:54:1009:54:10package:
09:54:10Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
09:54:1109:54:11install:
09:54:11:: delivering :: omero#omero_client;working@3ed3dc50d100 :: 5.6.3-596-818412a3a5-ice36-b100 :: integration :: Sat Apr 04 09:53:22 UTC 2026
09:54:11 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
09:54:11:: publishing :: omero#omero_client
09:54:11 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-596-818412a3a5-ice36-b100/omero_client-5.6.3-596-818412a3a5-ice36-b100.jar
09:54:11 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-596-818412a3a5-ice36-b100/omero_client-5.6.3-596-818412a3a5-ice36-b100.xml
09:54:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:54:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:54:1109:54:11retrieve:
09:54:11:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:54:11:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:54:11Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:54:1109:54:11dist:
09:54:11Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
09:54:11Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
09:54:11Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:54:11Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:54:11Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
09:54:11Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
09:54:11Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
09:54:11Entering /home/omero/workspace/OMERO-build/src/components/tests...
09:54:11Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:54:1209:54:12copy-licenses:
09:54:12Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:54:12Created dir: /home/omero/workspace/OMERO-build/src/dist/share
09:54:12Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
09:54:1209:54:12copy-history:
09:54:12Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:54:1209:54:12copy-etc:
09:54:12Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
09:54:12Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
09:54:1209:54:12copy-sql:
09:54:12Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
09:54:1709:54:17copy-server:
09:54:17 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
09:54:1709:54:17copy-client:
09:54:17Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
09:54:19 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
09:54:1909:54:19update-version:
09:54:19Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
09:54:1909:54:19create-workdirs:
09:54:19Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
09:54:19Created dir: /home/omero/workspace/OMERO-build/src/dist/var
09:54:19Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
09:54:1909:54:19copy-luts:
09:54:19Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:54:19Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:54:1909:54:19test-compile:
09:54:19:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:54:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:54:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:54:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:54:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:54:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:54:19Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:54:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:54:1909:54:19testng-init:
09:54:19:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:54:19:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:54:2209:54:22,162 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
09:54:2209:54:22,165 |-INFO in ch.qos.logback.classic.util.ContextInitializer@243fe859 - No custom configurators were discovered as a service.
09:54:2209:54:22,165 |-INFO in ch.qos.logback.classic.util.ContextInitializer@243fe859 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
09:54:2209:54:22,168 |-INFO in ch.qos.logback.classic.util.ContextInitializer@243fe859 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
09:54:2209:54:22,168 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
09:54:2209:54:22,169 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
09:54:2209:54:22,169 |-INFO in ch.qos.logback.classic.util.ContextInitializer@243fe859 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
09:54:2209:54:22,169 |-INFO in ch.qos.logback.classic.util.ContextInitializer@243fe859 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
09:54:2209:54:22,171 |-INFO in ch.qos.logback.classic.util.ContextInitializer@243fe859 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
09:54:2209:54:22,171 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
09:54:2209:54:22,172 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:54:2209:54:22,173 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@384edc3b - Resource [logback.xml] occurs multiple times on the classpath.
09:54:2209:54:22,173 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@384edc3b - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:54:2209:54:22,173 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@384edc3b - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
09:54:2209:54:22,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
09:54:2209:54:22,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
09:54:2209:54:22,387 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
09:54:2209:54:22,389 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@13421eb0 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
09:54:2209:54:22,389 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@13421eb0 - Please move "immediateFlush" property into the enclosing appender.
09:54:2209:54:22,449 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@13421eb0 - Setting the "immediateFlush" property of the enclosing appender to true
09:54:2209:54:22,450 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
09:54:2209:54:22,450 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
09:54:2209:54:22,450 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
09:54:2209:54:22,450 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
09:54:2209:54:22,450 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
09:54:2209:54:22,450 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
09:54:2209:54:22,451 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@bf68379 - End of configuration.
09:54:2209:54:22,453 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5050cf7e - Registering current configuration as safe fallback point
09:54:2209:54:22,453 |-INFO in ch.qos.logback.classic.util.ContextInitializer@243fe859 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 282 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
09:54:2209:54:22lifecycle.test-compile:
09:54:22Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:54:22Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:54:22warning: [options] bootstrap class path not set in conjunction with -source 8
09:54:23/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:54:23import omero.grid.RawAccessRequest;
09:54:23 ^
09:54:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:54:24import omero.grid.RawAccessRequest;
09:54:24 ^
09:54:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:54:24import omero.grid.RawAccessRequest;
09:54:24 ^
09:54:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
09:54:24import omero.model.ImportJob;
09:54:24 ^
09:54:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:54:24import omero.model.ImportJobI;
09:54:24 ^
09:54:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
09:54:25 IObject link = (IObject) linkClass.newInstance();
09:54:25 ^
09:54:25 where T is a type-variable:
09:54:25 T extends Object declared in class Class
09:54:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
09:54:25 T copy = (T) obj.getClass().newInstance();
09:54:25 ^
09:54:25 where T is a type-variable:
09:54:25 T extends Object declared in class Class
09:54:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:54:25 RawAccessRequest raw = new RawAccessRequest();
09:54:25 ^
09:54:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:54:25 RawAccessRequest raw = new RawAccessRequest();
09:54:25 ^
09:54:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:54:25 raw.repoUuid = legacy.root().getHash().getValue();
09:54:25 ^
09:54:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
09:54:25 raw.command = "rm";
09:54:25 ^
09:54:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
09:54:25 raw.args = Arrays.asList(path);
09:54:25 ^
09:54:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
09:54:25 final IObject link = linkClass.newInstance();
09:54:25 ^
09:54:25 where T is a type-variable:
09:54:25 T extends Object declared in class Class
09:54:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
09:54:25 originalLink.setChild(annotationClass.newInstance());
09:54:25 ^
09:54:25 where T is a type-variable:
09:54:25 T extends Object declared in class Class
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:54:26 RoiResult r = svc.findByImage(id, new RoiOptions());
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:54:26 final RawAccessRequest request = new RawAccessRequest();
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:54:26 final RawAccessRequest request = new RawAccessRequest();
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:54:26 request.repoUuid = repo.root().getHash().getValue();
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
09:54:26 request.command = "exists";
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
09:54:26 request.args = Collections.singletonList(dirPath);
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:54:26 final RawAccessRequest request = new RawAccessRequest();
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:54:26 final RawAccessRequest request = new RawAccessRequest();
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:54:26 request.repoUuid = repo.root().getHash().getValue();
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
09:54:26 request.command = "exists";
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
09:54:26 request.args = Collections.singletonList(dirName);
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
09:54:26 final ImportJob importJob = new ImportJobI();
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:54:26 final ImportJob importJob = new ImportJobI();
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
09:54:26 importJob.setImageName(omero.rtypes.rstring(name));
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
09:54:26 importJob.setImageDescription(omero.rtypes.rstring(desc));
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:54:26 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:54:26 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:54:26 final String savedName = sent.getImageName().getValue().toString();
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:54:26 final String savedDesc = sent.getImageDescription().getValue().toString();
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:54:26 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:54:26 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:54:26 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:54:26 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:54:26 RoiResult r = svc.findByImage(image.getId().getValue(),
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:54:26 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:54:26 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:54:26 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:54:26 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
09:54:26 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:54:26 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
09:54:26 table = svc.getTable(f.getId().getValue());
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:54:26 RoiResult r = svc.findByImage(image.getId().getValue(),
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:54:26 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:54:26 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:54:26 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:54:26 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
09:54:26 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
09:54:26 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
09:54:26 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
09:54:26 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
09:54:26 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
09:54:26 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
09:54:26 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
09:54:26 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
09:54:26 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
09:54:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
09:54:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
09:54:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
09:54:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
09:54:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
09:54:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
09:54:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
09:54:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:54:26 svc.getShapeStatsRestricted(
09:54:26 ^
09:54:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:54:26 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
09:54:26 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:54:27 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:54:27 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:54:27 request.typesToIgnore = Collections.singletonList("TagAnnotation");
09:54:27 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:54:27 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
09:54:27 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:54:27 request.typesToIgnore = Collections.singletonList("Annotation");
09:54:27 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:54:27 request.typesToIgnore = Collections.singletonList("Annotation");
09:54:27 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:54:27 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:54:27 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:54:27 p2.setRelatedTo(p1);
09:54:27 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:54:27 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
09:54:27 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:54:27 pixels1.setRelatedTo(pixels2);
09:54:27 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:54:27 Pixels pixels = pixels1.getRelatedTo();
09:54:27 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:54:27 Assert.assertNull(pixels1.getRelatedTo());
09:54:27 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:54:27 pixels1.setRelatedTo(pixels2);
09:54:27 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:54:27 Pixels pixels = pixels1.getRelatedTo();
09:54:27 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:54:27 Assert.assertNull(pixels1.getRelatedTo());
09:54:27 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:54:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:54:27 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:54:27 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:54:27 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:54:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:54:27 ^
09:54:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:54:27 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:54:27 ^
09:54:27Note: Some input files use unchecked or unsafe operations.
09:54:27Note: Recompile with -Xlint:unchecked for details.
09:54:2788 warnings
09:54:27Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1021850718.tmp
09:54:27Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
09:54:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:54:27:: delivering :: omero#OmeroJava-test;working@3ed3dc50d100 :: 5.6.3-596-818412a3a5-ice36-b100 :: integration :: Sat Apr 04 09:54:19 UTC 2026
09:54:27 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
09:54:27:: publishing :: omero#OmeroJava-test
09:54:27 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-596-818412a3a5-ice36-b100.jar
09:54:27 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-596-818412a3a5-ice36-b100.xml
09:54:2709:54:27build-eclipse:
09:54:27No sub-builds to iterate on
09:54:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:54:2709:54:27retrieve:
09:54:27:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:54:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:54:2909:54:29prepare:
09:54:29Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:54:3109:54:31release-clients:
09:54:31Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-596-818412a3a5-ice36-b100.zip
09:54:3609:54:36release-zip:
09:54:36Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-596-818412a3a5-ice36-b100.zip
09:54:4609:54:46BUILD SUCCESSFUL
09:54:46Total time: 1 minute 27 seconds
09:54:46++ '[' -d .git ']'
09:54:46++ python3 ./build.py release-src
09:54:46Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:54:4609:54:46release-src-git:
09:54:46Releasing openmicroscopy-5.6.3-596-818412a3a5-ice36-b100
09:54:48 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-596-818412a3a5-ice36-b100.zip
09:54:48 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-596-818412a3a5-ice36-b100-base.zip
09:54:4909:54:49BUILD SUCCESSFUL
09:54:49Total time: 3 seconds
09:54:49++ echo BUILD_NUMBER=100
09:54:49++ echo OMERO_BRANCH=merge_ci
09:54:49++ git_info
09:54:49+++ git rev-parse HEAD
09:54:49++ HEAD=818412a3a5d2efe1bf0a059fa900e39da3ff25c5
09:54:49++ git log --max-count=1 818412a3a5d2efe1bf0a059fa900e39da3ff25c5
09:54:49++ env
09:54:49++ sort
09:54:49Archiving artifacts
09:55:05Finished: SUCCESS
