23:24:21Started by upstream project "Trigger" build number 12323:24:21originally caused by:
23:24:21 Started by timer
23:24:21Running as SYSTEM
23:24:21Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
23:24:21The recommended git tool is: NONE
23:24:21No credentials specified
23:24:21 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
23:24:21Fetching changes from the remote Git repository
23:24:21 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
23:24:21Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git23:24:21 > git --version # timeout=10
23:24:21 > git --version # 'git version 2.52.0'
23:24:21 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
23:24:29 > git rev-parse origin/merge_ci^{commit} # timeout=10
23:24:29Checking out Revision 98e224a88c21f058b46a66475c1b505128f81120 (origin/merge_ci)
23:24:29 > git config core.sparsecheckout # timeout=10
23:24:29 > git checkout -f 98e224a88c21f058b46a66475c1b505128f81120 # timeout=10
23:24:31Commit message: "Add version.properties to etc/omero.properties"
23:24:31 > git rev-list --no-walk f833bede8900a9e012690372230e811e154703eb # timeout=10
23:24:32Cleaning workspace
23:24:32 > git rev-parse --verify HEAD # timeout=10
23:24:32Resetting working tree
23:24:32 > git reset --hard # timeout=10
23:24:32 > git clean -fdx # timeout=10
23:25:14Copied 6 artifacts from "OMERO-python-superbuild-build" build number 9423:25:15[OMERO-build] $ /bin/bash -xe /tmp/jenkins3627997557003647318.sh
23:25:15+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
23:25:15+ cd src
23:25:15+ export OMERO_BRANCH=merge_ci
23:25:15+ OMERO_BRANCH=merge_ci
23:25:15+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
23:25:15+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
23:25:54+ source /home/omero/settings.env
23:25:54++ OMERO_DB_HOST=pg
23:25:54++ OMERO_DB_USER=postgres
23:25:54++ OMERO_DB_PASS=
23:25:54++ OMERO_ROOT_PASS=omero
23:25:54++ OMERO_DATA_DIR=/OMERO
23:25:54++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
23:25:54+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
23:26:14+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl23:26:15Collecting zeroc-ice==3.6.5
23:26:16 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
23:26:18 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.0 MB/s eta 0:00:00
23:26:18Installing collected packages: zeroc-ice
23:26:22Successfully installed zeroc-ice-3.6.5
23:26:2223:26:22[notice] A new release of pip available: 22.3.1 -> 26.2.1
23:26:22[notice] To update, run: python3.11 -m pip install --upgrade pip
23:26:22+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
23:26:23Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
23:26:23Collecting setuptools<66
23:26:24 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
23:26:24Collecting omero-py
23:26:24 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
23:26:24Collecting appdirs
23:26:24 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
23:26:24Collecting future
23:26:24 Using cached future-1.0.0-py3-none-any.whl (491 kB)
23:26:25Collecting numpy<3,>=2
23:26:25 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
23:26:26Collecting Pillow>=10.0.0
23:26:26 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
23:26:26Collecting PyYAML
23:26:26 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
23:26:26Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
23:26:26Collecting requests
23:26:26 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
23:26:26Collecting portalocker
23:26:26 Using cached portalocker-4.4.0-py3-none-any.whl (129 kB)
23:26:27Collecting charset_normalizer<4,>=2
23:26:27 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB)
23:26:27Collecting idna<4,>=2.5
23:26:27 Using cached idna-3.20-py3-none-any.whl (69 kB)
23:26:27Collecting urllib3<3,>=1.26
23:26:27 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB)
23:26:28Collecting certifi>=2023.5.7
23:26:28 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
23:26:28Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
23:26:29 Attempting uninstall: setuptools
23:26:29 Found existing installation: setuptools 65.5.1
23:26:29 Uninstalling setuptools-65.5.1:
23:26:30 Successfully uninstalled setuptools-65.5.1
23:27:22Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.2 future-1.0.0 idna-3.20 numpy-2.4.6 omero-py-5.23.0 portalocker-4.4.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.8.0
23:27:2223:27:22[notice] A new release of pip available: 22.3.1 -> 26.2.1
23:27:22[notice] To update, run: python3.11 -m pip install --upgrade pip
23:27:23+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
23:27:23++ deactivate nondestructive
23:27:23++ '[' -n '' ']'
23:27:23++ '[' -n '' ']'
23:27:23++ hash -r
23:27:23++ '[' -n '' ']'
23:27:23++ unset VIRTUAL_ENV
23:27:23++ unset VIRTUAL_ENV_PROMPT
23:27:23++ '[' '!' nondestructive = nondestructive ']'
23:27:23++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
23:27:23++ export VIRTUAL_ENV
23:27:23++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:27:23++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:27:23++ export PATH
23:27:23++ '[' -n '' ']'
23:27:23++ '[' -z '' ']'
23:27:23++ _OLD_VIRTUAL_PS1=
23:27:23++ PS1='(omero-virtualenv) '
23:27:23++ export PS1
23:27:23++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
23:27:23++ export VIRTUAL_ENV_PROMPT
23:27:23++ hash -r
23:27:23+ source docs/hudson/OMERO.sh
23:27:23++ set -e
23:27:23++ set -u
23:27:23++ set -x
23:27:23++ source docs/hudson/functions.sh
23:27:23++ echo Building merge_ci
23:27:23Building merge_ci
23:27:23++ python3 ./build.py build-dev release-all
23:27:23Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:27:2523:27:25check-ivy:
23:27:25Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
23:27:25Created dir: /home/omero/workspace/OMERO-build/src/target
23:27:25:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:27:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:27:2723:27:27build-scons:
23:27:27Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:27:28No sub-builds to iterate on
23:27:29Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:27:2923:27:29buildlist:
23:27:29:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:27:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:27:3023:27:30clean:
23:27:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:27:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:27:3123:27:31python-clean:
23:27:31WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:27:31/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-98e224a88c-ice36-b104') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:27:31 warnings.warn(
23:27:31running clean
23:27:31Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
23:27:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:27:3223:27:32python-clean:
23:27:32WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:27:32/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-98e224a88c-ice36-b104') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:27:32 warnings.warn(
23:27:32running clean
23:27:32Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
23:27:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:27:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:27:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:27:3423:27:34python-clean:
23:27:34WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:27:34/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-98e224a88c-ice36-b104') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:27:34 warnings.warn(
23:27:34running clean
23:27:34Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
23:27:34Deleting directory /home/omero/workspace/OMERO-build/src/target
23:27:3523:27:35build-scons:
23:27:35Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:27:3723:27:37build:
23:27:37No sub-builds to iterate on
23:27:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:27:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:27:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:27:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:27:3823:27:38tools-init:
23:27:38no-op
23:27:3823:27:38retrieve:
23:27:38:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:27:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:29:5923:29:59prepare:
23:29:59Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:29:59Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
23:29:59Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
23:29:59Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:29:59Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:29:59Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:29:59Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
23:29:59Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:29:59Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:29:59Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:29:59Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:29:59Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:29:59Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:29:59Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:29:59Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:29:5923:29:59pre-compile:
23:29:59Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:30:00Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:30:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:30:12Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:30:13Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:30:1523:30:15compile:
23:30:15no-op
23:30:1623:30:16package:
23:30:16Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
23:30:1923:30:19install:
23:30:19:: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-689-98e224a88c-ice36-b104 :: integration :: Thu Oct 08 23:27:38 UTC 2026
23:30:19 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
23:30:19:: publishing :: omero#omero_client
23:30:19 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-689-98e224a88c-ice36-b104/omero_client-5.6.3-689-98e224a88c-ice36-b104.jar
23:30:20 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-689-98e224a88c-ice36-b104/omero_client-5.6.3-689-98e224a88c-ice36-b104.xml
23:30:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:30:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:30:2123:30:21retrieve:
23:30:21:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:30:21:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:30:22Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:30:2223:30:22dist:
23:30:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
23:30:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
23:30:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:30:22Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:30:22Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
23:30:23Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
23:30:23Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
23:30:24Entering /home/omero/workspace/OMERO-build/src/components/tests...
23:30:24Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:30:2523:30:25copy-licenses:
23:30:25Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:30:25Created dir: /home/omero/workspace/OMERO-build/src/dist/share
23:30:25Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
23:30:2623:30:26copy-history:
23:30:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:30:2623:30:26copy-etc:
23:30:26Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
23:30:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
23:30:2723:30:27copy-sql:
23:30:27Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
23:31:0823:31:08copy-server:
23:31:08 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
23:31:08 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
23:31:2023:31:20copy-client:
23:31:20Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
23:31:29 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
23:31:29 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
23:31:3523:31:35update-version:
23:31:35Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
23:31:3523:31:35create-workdirs:
23:31:35Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
23:31:35Created dir: /home/omero/workspace/OMERO-build/src/dist/var
23:31:35Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
23:31:3523:31:35copy-luts:
23:31:35Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:31:35Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:31:3523:31:35test-compile:
23:31:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:31:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:31:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:31:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:31:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:31:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:31:38Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:31:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:31:3923:31:39testng-init:
23:31:39:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:31:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:31:5123:31:51,465 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
23:31:5123:31:51,469 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7b0be268 - No custom configurators were discovered as a service.
23:31:5123:31:51,469 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7b0be268 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
23:31:5123:31:51,472 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7b0be268 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
23:31:5123:31:51,477 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
23:31:5123:31:51,480 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
23:31:5123:31:51,481 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7b0be268 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 9 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
23:31:5123:31:51,481 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7b0be268 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
23:31:5123:31:51,483 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7b0be268 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
23:31:5123:31:51,486 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
23:31:5123:31:51,487 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:31:5123:31:51,489 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@48adcadf - Resource [logback.xml] occurs multiple times on the classpath.
23:31:5123:31:51,489 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@48adcadf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:31:5123:31:51,489 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@48adcadf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
23:31:5123:31:51,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
23:31:5123:31:51,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
23:31:5123:31:51,770 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
23:31:5123:31:51,772 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2ff7685 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
23:31:5123:31:51,772 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2ff7685 - Please move "immediateFlush" property into the enclosing appender.
23:31:5123:31:51,858 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2ff7685 - Setting the "immediateFlush" property of the enclosing appender to true
23:31:5123:31:51,859 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
23:31:5123:31:51,859 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
23:31:5123:31:51,859 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
23:31:5123:31:51,859 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
23:31:5123:31:51,859 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
23:31:5123:31:51,859 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
23:31:5123:31:51,860 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@f01e723 - End of configuration.
23:31:5123:31:51,863 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2b3d5c09 - Registering current configuration as safe fallback point
23:31:5123:31:51,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7b0be268 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 380 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
23:31:5123:31:51lifecycle.test-compile:
23:31:51Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:31:51Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:31:52warning: [options] bootstrap class path not set in conjunction with -source 8
23:31:52warning: [options] source value 8 is obsolete and will be removed in a future release
23:31:52warning: [options] target value 8 is obsolete and will be removed in a future release
23:31:52warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
23:31:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:55import omero.grid.RawAccessRequest;
23:31:55 ^
23:31:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:56import omero.grid.RawAccessRequest;
23:31:56 ^
23:31:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:56import omero.grid.RawAccessRequest;
23:31:56 ^
23:31:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
23:31:56import omero.model.ImportJob;
23:31:56 ^
23:31:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:31:56import omero.model.ImportJobI;
23:31:56 ^
23:31:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
23:31:57 IObject link = (IObject) linkClass.newInstance();
23:31:57 ^
23:31:57 where T is a type-variable:
23:31:57 T extends Object declared in class Class
23:31:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
23:31:57 T copy = (T) obj.getClass().newInstance();
23:31:57 ^
23:31:57 where T is a type-variable:
23:31:57 T extends Object declared in class Class
23:31:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:57 RawAccessRequest raw = new RawAccessRequest();
23:31:57 ^
23:31:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:57 RawAccessRequest raw = new RawAccessRequest();
23:31:57 ^
23:31:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:31:57 raw.repoUuid = legacy.root().getHash().getValue();
23:31:57 ^
23:31:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
23:31:57 raw.command = "rm";
23:31:57 ^
23:31:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
23:31:57 raw.args = Arrays.asList(path);
23:31:57 ^
23:31:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
23:31:58 final IObject link = linkClass.newInstance();
23:31:58 ^
23:31:58 where T is a type-variable:
23:31:58 T extends Object declared in class Class
23:31:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
23:31:58 originalLink.setChild(annotationClass.newInstance());
23:31:58 ^
23:31:58 where T is a type-variable:
23:31:58 T extends Object declared in class Class
23:31:58/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:31:58 RoiResult r = svc.findByImage(id, new RoiOptions());
23:31:58 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:59 final RawAccessRequest request = new RawAccessRequest();
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:59 final RawAccessRequest request = new RawAccessRequest();
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:31:59 request.repoUuid = repo.root().getHash().getValue();
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
23:31:59 request.command = "exists";
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
23:31:59 request.args = Collections.singletonList(dirPath);
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:59 final RawAccessRequest request = new RawAccessRequest();
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:59 final RawAccessRequest request = new RawAccessRequest();
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:31:59 request.repoUuid = repo.root().getHash().getValue();
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
23:31:59 request.command = "exists";
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
23:31:59 request.args = Collections.singletonList(dirName);
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:31:59 RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
23:31:59 final ImportJob importJob = new ImportJobI();
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:31:59 final ImportJob importJob = new ImportJobI();
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
23:31:59 importJob.setImageName(omero.rtypes.rstring(name));
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
23:31:59 importJob.setImageDescription(omero.rtypes.rstring(desc));
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:31:59 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:31:59 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:31:59 final String savedName = sent.getImageName().getValue().toString();
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:31:59 final String savedDesc = sent.getImageDescription().getValue().toString();
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:31:59 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:31:59 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:31:59 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
23:31:59 ^
23:31:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:31:59 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
23:31:59 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:32:00 RoiResult r = svc.findByImage(image.getId().getValue(),
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:00 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
23:32:00 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:00 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
23:32:00 table = svc.getTable(f.getId().getValue());
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:32:00 RoiResult r = svc.findByImage(image.getId().getValue(),
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:32:00 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:32:00 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:32:00 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:32:00 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:00 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:00 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:00 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:00 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
23:32:00 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:00 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:00 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:00 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:00 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:32:00 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:32:00 svc.getShapeStatsRestricted(
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:32:00 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:32:00 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:32:00 request.typesToIgnore = Collections.singletonList("TagAnnotation");
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:32:00 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:32:00 request.typesToIgnore = Collections.singletonList("Annotation");
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:32:00 request.typesToIgnore = Collections.singletonList("Annotation");
23:32:00 ^
23:32:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:32:00 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:32:00 ^
23:32:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:32:01 p2.setRelatedTo(p1);
23:32:01 ^
23:32:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:32:01 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
23:32:01 ^
23:32:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:32:01 pixels1.setRelatedTo(pixels2);
23:32:01 ^
23:32:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:32:01 Pixels pixels = pixels1.getRelatedTo();
23:32:01 ^
23:32:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:32:01 Assert.assertNull(pixels1.getRelatedTo());
23:32:01 ^
23:32:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:32:01 pixels1.setRelatedTo(pixels2);
23:32:01 ^
23:32:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:32:01 Pixels pixels = pixels1.getRelatedTo();
23:32:01 ^
23:32:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:32:01 Assert.assertNull(pixels1.getRelatedTo());
23:32:01 ^
23:32:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:32:01 ^
23:32:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:01 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:32:01 ^
23:32:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:01 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:32:01 ^
23:32:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:32:01 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:32:01 ^
23:32:01Note: Some input files use unchecked or unsafe operations.
23:32:01Note: Recompile with -Xlint:unchecked for details.
23:32:0192 warnings
23:32:01Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1029553184.tmp
23:32:01Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
23:32:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:32:02:: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-689-98e224a88c-ice36-b104 :: integration :: Thu Oct 08 23:31:38 UTC 2026
23:32:02 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
23:32:02:: publishing :: omero#OmeroJava-test
23:32:02 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-689-98e224a88c-ice36-b104.jar
23:32:02 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-689-98e224a88c-ice36-b104.xml
23:32:0223:32:02build-eclipse:
23:32:02No sub-builds to iterate on
23:32:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:32:0323:32:03retrieve:
23:32:03:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:32:03:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:32:0823:32:08prepare:
23:32:08Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:32:1323:32:13release-clients:
23:32:13Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-689-98e224a88c-ice36-b104.zip
23:32:2023:32:20release-zip:
23:32:20Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-689-98e224a88c-ice36-b104.zip
23:32:3523:32:35BUILD SUCCESSFUL
23:32:35Total time: 5 minutes 11 seconds
23:32:35++ '[' -d .git ']'
23:32:35++ python3 ./build.py release-src
23:32:35Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:32:3723:32:37release-src-git:
23:32:37Releasing openmicroscopy-5.6.3-689-98e224a88c-ice36-b104
23:32:38 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-689-98e224a88c-ice36-b104.zip
23:32:39 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-689-98e224a88c-ice36-b104-base.zip
23:32:4023:32:40BUILD SUCCESSFUL
23:32:40Total time: 4 seconds
23:32:40++ echo BUILD_NUMBER=104
23:32:40++ echo OMERO_BRANCH=merge_ci
23:32:40++ git_info
23:32:40+++ git rev-parse HEAD
23:32:40++ HEAD=98e224a88c21f058b46a66475c1b505128f81120
23:32:40++ git log --max-count=1 98e224a88c21f058b46a66475c1b505128f81120
23:32:40++ env
23:32:40++ sort
23:32:40Archiving artifacts
23:32:59Finished: SUCCESS
