16:20:48Started by upstream project "Trigger" build number 14516:20:48originally caused by:
16:20:48 Started by user devspace16:20:48Running as SYSTEM
16:20:48Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
16:20:48The recommended git tool is: NONE
16:20:48No credentials specified
16:20:48 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
16:20:48Fetching changes from the remote Git repository
16:20:48 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
16:20:48Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git16:20:48 > git --version # timeout=10
16:20:48 > git --version # 'git version 2.47.3'
16:20:48 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
16:20:49 > git rev-parse origin/merge_ci^{commit} # timeout=10
16:20:49Checking out Revision 0ae441fce6efc7648b40781cbf61cb8b56bc6782 (origin/merge_ci)
16:20:49 > git config core.sparsecheckout # timeout=10
16:20:49 > git checkout -f 0ae441fce6efc7648b40781cbf61cb8b56bc6782 # timeout=10
16:20:49Commit message: "Add version.properties to etc/omero.properties"
16:20:49 > git rev-list --no-walk 244d51220f7003271167c682cc5897e98d37a79a # timeout=10
16:20:49Cleaning workspace
16:20:49 > git rev-parse --verify HEAD # timeout=10
16:20:49Resetting working tree
16:20:49 > git reset --hard # timeout=10
16:20:49 > git clean -fdx # timeout=10
16:20:49Copied 6 artifacts from "OMERO-python-superbuild-build" build number 10816:20:49[OMERO-build] $ /bin/bash -xe /tmp/jenkins13655375757063524029.sh
16:20:49+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
16:20:49+ cd src
16:20:49+ export OMERO_BRANCH=merge_ci
16:20:49+ OMERO_BRANCH=merge_ci
16:20:49+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
16:20:49+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
16:20:49+ source /home/omero/settings.env
16:20:49++ OMERO_DB_HOST=pg
16:20:49++ OMERO_DB_USER=postgres
16:20:49++ OMERO_DB_PASS=
16:20:49++ OMERO_ROOT_PASS=omero
16:20:49++ OMERO_DATA_DIR=/OMERO
16:20:49++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
16:20:49+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
16:20:53+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl16:20:53Collecting zeroc-ice==3.6.5
16:20:54 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
16:20:56 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 9.7 MB/s eta 0:00:00
16:20:57Installing collected packages: zeroc-ice
16:20:58Successfully installed zeroc-ice-3.6.5
16:20:5816:20:58[notice] A new release of pip available: 22.3.1 -> 26.0.1
16:20:58[notice] To update, run: python3.11 -m pip install --upgrade pip
16:20:58+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
16:20:58Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
16:20:58Collecting setuptools<66
16:20:58 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
16:20:59Collecting omero-py
16:20:59 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
16:20:59Collecting appdirs
16:20:59 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
16:20:59Collecting future
16:20:59 Using cached future-1.0.0-py3-none-any.whl (491 kB)
16:20:59Collecting numpy<3,>=2
16:20:59 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
16:21:00Collecting Pillow>=10.0.0
16:21:00 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
16:21:00Collecting PyYAML
16:21:00 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
16:21:00Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
16:21:00Collecting requests
16:21:00 Using cached requests-2.33.1-py3-none-any.whl (64 kB)
16:21:00Collecting portalocker
16:21:00 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
16:21:01Collecting charset_normalizer<4,>=2
16:21:01 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB)
16:21:01Collecting idna<4,>=2.5
16:21:01 Using cached idna-3.11-py3-none-any.whl (71 kB)
16:21:01Collecting urllib3<3,>=1.26
16:21:01 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
16:21:01Collecting certifi>=2023.5.7
16:21:01 Using cached certifi-2026.2.25-py3-none-any.whl (153 kB)
16:21:01Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
16:21:01 Attempting uninstall: setuptools
16:21:01 Found existing installation: setuptools 65.5.1
16:21:01 Uninstalling setuptools-65.5.1:
16:21:01 Successfully uninstalled setuptools-65.5.1
16:21:06Successfully installed Pillow-12.2.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.2.25 charset_normalizer-3.4.7 future-1.0.0 idna-3.11 numpy-2.4.4 omero-py-5.22.1 portalocker-3.2.0 requests-2.33.1 setuptools-65.7.0 urllib3-2.6.3
16:21:0616:21:06[notice] A new release of pip available: 22.3.1 -> 26.0.1
16:21:06[notice] To update, run: python3.11 -m pip install --upgrade pip
16:21:06+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
16:21:06++ deactivate nondestructive
16:21:06++ '[' -n '' ']'
16:21:06++ '[' -n '' ']'
16:21:06++ hash -r
16:21:06++ '[' -n '' ']'
16:21:06++ unset VIRTUAL_ENV
16:21:06++ unset VIRTUAL_ENV_PROMPT
16:21:06++ '[' '!' nondestructive = nondestructive ']'
16:21:06++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
16:21:06++ export VIRTUAL_ENV
16:21:06++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:21:06++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
16:21:06++ export PATH
16:21:06++ '[' -n '' ']'
16:21:06++ '[' -z '' ']'
16:21:06++ _OLD_VIRTUAL_PS1=
16:21:06++ PS1='(omero-virtualenv) '
16:21:06++ export PS1
16:21:06++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
16:21:06++ export VIRTUAL_ENV_PROMPT
16:21:06++ hash -r
16:21:06+ source docs/hudson/OMERO.sh
16:21:06++ set -e
16:21:06++ set -u
16:21:06++ set -x
16:21:06++ source docs/hudson/functions.sh
16:21:06++ echo Building merge_ci
16:21:06Building merge_ci
16:21:06++ python3 ./build.py build-dev release-all
16:21:07Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
16:21:0716:21:07check-ivy:
16:21:07Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
16:21:07Created dir: /home/omero/workspace/OMERO-build/src/target
16:21:07:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:21:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:21:0816:21:08build-scons:
16:21:08Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
16:21:08No sub-builds to iterate on
16:21:08Entering /home/omero/workspace/OMERO-build/src/components/tools...
16:21:0816:21:08buildlist:
16:21:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:21:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:21:0816:21:08clean:
16:21:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:21:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:21:0816:21:08python-clean:
16:21:08WARNING: '' not a valid package name; please use only .-separated package names in setup.py
16:21:08/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-0ae441fce6-ice36-b112') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
16:21:08 warnings.warn(
16:21:08running clean
16:21:08Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
16:21:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
16:21:0916:21:09python-clean:
16:21:09WARNING: '' not a valid package name; please use only .-separated package names in setup.py
16:21:09/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-0ae441fce6-ice36-b112') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
16:21:09 warnings.warn(
16:21:09running clean
16:21:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
16:21:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
16:21:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:21:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:21:0916:21:09python-clean:
16:21:09WARNING: '' not a valid package name; please use only .-separated package names in setup.py
16:21:09/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-0ae441fce6-ice36-b112') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
16:21:09 warnings.warn(
16:21:09running clean
16:21:09Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
16:21:09Deleting directory /home/omero/workspace/OMERO-build/src/target
16:21:0916:21:09build-scons:
16:21:09Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
16:21:0916:21:09build:
16:21:09No sub-builds to iterate on
16:21:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:21:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:21:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
16:21:10Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
16:21:1016:21:10tools-init:
16:21:10no-op
16:21:1016:21:10retrieve:
16:21:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:21:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:21:4916:21:49prepare:
16:21:49Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
16:21:49Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
16:21:49Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
16:21:49Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
16:21:49Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
16:21:49Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
16:21:49Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
16:21:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
16:21:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
16:21:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
16:21:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
16:21:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
16:21:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
16:21:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
16:21:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
16:21:4916:21:49pre-compile:
16:21:49Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
16:21:50Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
16:21:50Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
16:21:50Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
16:21:50Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
16:21:5016:21:50compile:
16:21:50no-op
16:21:5016:21:50package:
16:21:50Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
16:21:5016:21:50install:
16:21:50:: delivering :: omero#omero_client;working@012a2a74efc3 :: 5.6.3-594-0ae441fce6-ice36-b112 :: integration :: Tue Apr 14 16:21:10 UTC 2026
16:21:50 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
16:21:50:: publishing :: omero#omero_client
16:21:50 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-0ae441fce6-ice36-b112/omero_client-5.6.3-594-0ae441fce6-ice36-b112.jar
16:21:50 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-0ae441fce6-ice36-b112/omero_client-5.6.3-594-0ae441fce6-ice36-b112.xml
16:21:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:21:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:21:5116:21:51retrieve:
16:21:51:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:21:51:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:21:51Entering /home/omero/workspace/OMERO-build/src/components/tools...
16:21:5116:21:51dist:
16:21:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
16:21:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
16:21:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
16:21:51Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
16:21:51Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
16:21:51Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
16:21:51Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
16:21:51Entering /home/omero/workspace/OMERO-build/src/components/tests...
16:21:51Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
16:21:5116:21:51copy-licenses:
16:21:51Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
16:21:51Created dir: /home/omero/workspace/OMERO-build/src/dist/share
16:21:51Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
16:21:5116:21:51copy-history:
16:21:51Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
16:21:5116:21:51copy-etc:
16:21:51Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
16:21:51Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
16:21:5116:21:51copy-sql:
16:21:51Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
16:21:5716:21:57copy-server:
16:21:57 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
16:21:5716:21:57copy-client:
16:21:57Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
16:21:58 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
16:21:5816:21:58update-version:
16:21:58Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
16:21:5816:21:58create-workdirs:
16:21:58Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
16:21:58Created dir: /home/omero/workspace/OMERO-build/src/dist/var
16:21:58Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
16:21:5816:21:58copy-luts:
16:21:58Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
16:21:58Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
16:21:5816:21:58test-compile:
16:21:58:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:21:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
16:21:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:21:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
16:21:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:21:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
16:21:58Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
16:21:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
16:21:5916:21:59testng-init:
16:21:59:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:21:59:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:22:0116:22:01,489 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
16:22:0116:22:01,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - No custom configurators were discovered as a service.
16:22:0116:22:01,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
16:22:0116:22:01,494 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
16:22:0116:22:01,494 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
16:22:0116:22:01,495 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
16:22:0116:22:01,495 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
16:22:0116:22:01,495 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
16:22:0116:22:01,497 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
16:22:0116:22:01,497 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
16:22:0116:22:01,497 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
16:22:0116:22:01,498 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1818c0a0 - Resource [logback.xml] occurs multiple times on the classpath.
16:22:0116:22:01,498 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1818c0a0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
16:22:0116:22:01,498 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1818c0a0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
16:22:0116:22:01,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
16:22:0116:22:01,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
16:22:0116:22:01,715 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
16:22:0116:22:01,717 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@646a5e76 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
16:22:0116:22:01,717 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@646a5e76 - Please move "immediateFlush" property into the enclosing appender.
16:22:0116:22:01,771 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@646a5e76 - Setting the "immediateFlush" property of the enclosing appender to true
16:22:0116:22:01,772 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
16:22:0116:22:01,772 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
16:22:0116:22:01,772 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
16:22:0116:22:01,772 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
16:22:0116:22:01,772 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
16:22:0116:22:01,772 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
16:22:0116:22:01,773 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2656db92 - End of configuration.
16:22:0116:22:01,775 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@58649b7e - Registering current configuration as safe fallback point
16:22:0116:22:01,775 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 278 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
16:22:0116:22:01lifecycle.test-compile:
16:22:01Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
16:22:01Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
16:22:02warning: [options] bootstrap class path not set in conjunction with -source 8
16:22:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:22:03import omero.grid.RawAccessRequest;
16:22:03 ^
16:22:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:22:03import omero.grid.RawAccessRequest;
16:22:03 ^
16:22:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:22:03import omero.grid.RawAccessRequest;
16:22:03 ^
16:22:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
16:22:03import omero.model.ImportJob;
16:22:03 ^
16:22:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
16:22:03import omero.model.ImportJobI;
16:22:03 ^
16:22:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
16:22:04 IObject link = (IObject) linkClass.newInstance();
16:22:04 ^
16:22:04 where T is a type-variable:
16:22:04 T extends Object declared in class Class
16:22:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
16:22:04 T copy = (T) obj.getClass().newInstance();
16:22:04 ^
16:22:04 where T is a type-variable:
16:22:04 T extends Object declared in class Class
16:22:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:22:04 RawAccessRequest raw = new RawAccessRequest();
16:22:04 ^
16:22:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:22:04 RawAccessRequest raw = new RawAccessRequest();
16:22:04 ^
16:22:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
16:22:04 raw.repoUuid = legacy.root().getHash().getValue();
16:22:04 ^
16:22:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
16:22:04 raw.command = "rm";
16:22:04 ^
16:22:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
16:22:04 raw.args = Arrays.asList(path);
16:22:04 ^
16:22:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
16:22:04 final IObject link = linkClass.newInstance();
16:22:04 ^
16:22:04 where T is a type-variable:
16:22:04 T extends Object declared in class Class
16:22:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
16:22:04 originalLink.setChild(annotationClass.newInstance());
16:22:04 ^
16:22:04 where T is a type-variable:
16:22:04 T extends Object declared in class Class
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
16:22:05 RoiResult r = svc.findByImage(id, new RoiOptions());
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:22:05 final RawAccessRequest request = new RawAccessRequest();
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:22:05 final RawAccessRequest request = new RawAccessRequest();
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
16:22:05 request.repoUuid = repo.root().getHash().getValue();
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
16:22:05 request.command = "exists";
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
16:22:05 request.args = Collections.singletonList(dirPath);
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:22:05 final RawAccessRequest request = new RawAccessRequest();
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
16:22:05 final RawAccessRequest request = new RawAccessRequest();
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
16:22:05 request.repoUuid = repo.root().getHash().getValue();
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
16:22:05 request.command = "exists";
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
16:22:05 request.args = Collections.singletonList(dirName);
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
16:22:05 final ImportJob importJob = new ImportJobI();
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
16:22:05 final ImportJob importJob = new ImportJobI();
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
16:22:05 importJob.setImageName(omero.rtypes.rstring(name));
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
16:22:05 importJob.setImageDescription(omero.rtypes.rstring(desc));
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
16:22:05 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
16:22:05 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
16:22:05 final String savedName = sent.getImageName().getValue().toString();
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
16:22:05 final String savedDesc = sent.getImageDescription().getValue().toString();
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
16:22:05 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
16:22:05 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
16:22:05 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
16:22:05 ^
16:22:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
16:22:05 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
16:22:05 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
16:22:06 RoiResult r = svc.findByImage(image.getId().getValue(),
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:22:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:22:06 l = svc.getRoiMeasurements(image.getId().getValue(), options);
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:22:06 l = svc.getRoiMeasurements(image.getId().getValue(), options);
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:22:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
16:22:06 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:22:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
16:22:06 table = svc.getTable(f.getId().getValue());
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
16:22:06 RoiResult r = svc.findByImage(image.getId().getValue(),
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
16:22:06 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
16:22:06 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
16:22:06 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
16:22:06 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:22:06 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:22:06 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:22:06 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:22:06 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
16:22:06 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:22:06 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:22:06 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:22:06 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:22:06 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:22:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:22:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:22:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:22:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:22:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:22:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:22:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
16:22:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
16:22:06 svc.getShapeStatsRestricted(
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
16:22:06 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
16:22:06 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
16:22:06 request.typesToIgnore = Collections.singletonList("TagAnnotation");
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
16:22:06 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
16:22:06 request.typesToIgnore = Collections.singletonList("Annotation");
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
16:22:06 request.typesToIgnore = Collections.singletonList("Annotation");
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
16:22:06 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
16:22:06 p2.setRelatedTo(p1);
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
16:22:06 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
16:22:06 pixels1.setRelatedTo(pixels2);
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
16:22:06 Pixels pixels = pixels1.getRelatedTo();
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
16:22:06 Assert.assertNull(pixels1.getRelatedTo());
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
16:22:06 pixels1.setRelatedTo(pixels2);
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
16:22:06 Pixels pixels = pixels1.getRelatedTo();
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
16:22:06 Assert.assertNull(pixels1.getRelatedTo());
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:22:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:22:06 l = svc.getRoiMeasurements(image.getId().getValue(), options);
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:22:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
16:22:06 ^
16:22:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
16:22:06 l = svc.getRoiMeasurements(image.getId().getValue(), options);
16:22:06 ^
16:22:06Note: Some input files use unchecked or unsafe operations.
16:22:06Note: Recompile with -Xlint:unchecked for details.
16:22:0688 warnings
16:22:06Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1929292279.tmp
16:22:06Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
16:22:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:22:06:: delivering :: omero#OmeroJava-test;working@012a2a74efc3 :: 5.6.3-594-0ae441fce6-ice36-b112 :: integration :: Tue Apr 14 16:21:58 UTC 2026
16:22:06 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
16:22:06:: publishing :: omero#OmeroJava-test
16:22:06 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-0ae441fce6-ice36-b112.jar
16:22:06 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-0ae441fce6-ice36-b112.xml
16:22:0616:22:06build-eclipse:
16:22:06No sub-builds to iterate on
16:22:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
16:22:0716:22:07retrieve:
16:22:07:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
16:22:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
16:22:0816:22:08prepare:
16:22:08Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
16:22:0916:22:09release-clients:
16:22:09Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-594-0ae441fce6-ice36-b112.zip
16:22:1416:22:14release-zip:
16:22:14Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-594-0ae441fce6-ice36-b112.zip
16:22:2416:22:24BUILD SUCCESSFUL
16:22:24Total time: 1 minute 17 seconds
16:22:24++ '[' -d .git ']'
16:22:24++ python3 ./build.py release-src
16:22:24Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
16:22:2516:22:25release-src-git:
16:22:25Releasing openmicroscopy-5.6.3-594-0ae441fce6-ice36-b112
16:22:26 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-0ae441fce6-ice36-b112.zip
16:22:26 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-0ae441fce6-ice36-b112-base.zip
16:22:2816:22:28BUILD SUCCESSFUL
16:22:28Total time: 3 seconds
16:22:28++ echo BUILD_NUMBER=112
16:22:28++ echo OMERO_BRANCH=merge_ci
16:22:28++ git_info
16:22:28+++ git rev-parse HEAD
16:22:28++ HEAD=0ae441fce6efc7648b40781cbf61cb8b56bc6782
16:22:28++ git log --max-count=1 0ae441fce6efc7648b40781cbf61cb8b56bc6782
16:22:28++ env
16:22:28++ sort
16:22:28Archiving artifacts
16:22:44Finished: SUCCESS
