23:26:57Started by upstream project "Trigger" build number 13223:26:57originally caused by:
23:26:57 Started by timer
23:26:57Running as SYSTEM
23:26:57Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
23:26:57The recommended git tool is: NONE
23:26:57No credentials specified
23:26:57 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
23:26:57Fetching changes from the remote Git repository
23:26:57 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
23:26:57Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git23:26:57 > git --version # timeout=10
23:26:57 > git --version # 'git version 2.52.0'
23:26:57 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
23:27:04 > git rev-parse origin/merge_ci^{commit} # timeout=10
23:27:04Checking out Revision af317af826a6c28e54d7ef3dee5cd40835c9f683 (origin/merge_ci)
23:27:04 > git config core.sparsecheckout # timeout=10
23:27:04 > git checkout -f af317af826a6c28e54d7ef3dee5cd40835c9f683 # timeout=10
23:27:07Commit message: "Add version.properties to etc/omero.properties"
23:27:07 > git rev-list --no-walk 08a68f84c81e7adef00a6cd3c5a6267d299fdd10 # timeout=10
23:27:07Cleaning workspace
23:27:07 > git rev-parse --verify HEAD # timeout=10
23:27:07Resetting working tree
23:27:07 > git reset --hard # timeout=10
23:27:08 > git clean -fdx # timeout=10
23:27:57Copied 6 artifacts from "OMERO-python-superbuild-build" build number 10223:27:57[OMERO-build] $ /bin/bash -xe /tmp/jenkins17554311398987591827.sh
23:27:57+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
23:27:57+ cd src
23:27:57+ export OMERO_BRANCH=merge_ci
23:27:57+ OMERO_BRANCH=merge_ci
23:27:57+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
23:27:57+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
23:28:36+ source /home/omero/settings.env
23:28:36++ OMERO_DB_HOST=pg
23:28:36++ OMERO_DB_USER=postgres
23:28:36++ OMERO_DB_PASS=
23:28:36++ OMERO_ROOT_PASS=omero
23:28:36++ OMERO_DATA_DIR=/OMERO
23:28:36++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
23:28:36+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
23:28:56+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl23:28:57Collecting zeroc-ice==3.6.5
23:28:58 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
23:29:00 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.5 MB/s eta 0:00:00
23:29:00Installing collected packages: zeroc-ice
23:29:04Successfully installed zeroc-ice-3.6.5
23:29:0423:29:04[notice] A new release of pip available: 22.3.1 -> 26.2.1
23:29:04[notice] To update, run: python3.11 -m pip install --upgrade pip
23:29:04+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
23:29:05Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
23:29:05Collecting setuptools<66
23:29:05 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
23:29:06Collecting omero-py
23:29:06 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
23:29:06Collecting appdirs
23:29:06 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
23:29:06Collecting future
23:29:06 Using cached future-1.0.0-py3-none-any.whl (491 kB)
23:29:07Collecting numpy<3,>=2
23:29:07 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
23:29:08Collecting Pillow>=10.0.0
23:29:08 Downloading pillow-13.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
23:29:08 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.1/7.1 MB 13.0 MB/s eta 0:00:00
23:29:08Collecting PyYAML
23:29:08 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
23:29:08Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
23:29:09Collecting requests
23:29:09 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
23:29:09Collecting portalocker
23:29:09 Downloading portalocker-4.4.1-py3-none-any.whl (129 kB)
23:29:09 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 129.7/129.7 kB 5.1 MB/s eta 0:00:00
23:29:09Collecting charset_normalizer<4,>=2
23:29:09 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB)
23:29:09Collecting idna<4,>=2.5
23:29:09 Using cached idna-3.20-py3-none-any.whl (69 kB)
23:29:10Collecting urllib3<3,>=1.26
23:29:10 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB)
23:29:10Collecting certifi>=2023.5.7
23:29:10 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
23:29:10Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
23:29:11 Attempting uninstall: setuptools
23:29:11 Found existing installation: setuptools 65.5.1
23:29:11 Uninstalling setuptools-65.5.1:
23:29:12 Successfully uninstalled setuptools-65.5.1
23:30:08Successfully installed Pillow-13.0.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.2 future-1.0.0 idna-3.20 numpy-2.4.6 omero-py-5.23.0 portalocker-4.4.1 requests-2.34.2 setuptools-65.7.0 urllib3-2.8.0
23:30:0823:30:08[notice] A new release of pip available: 22.3.1 -> 26.2.1
23:30:08[notice] To update, run: python3.11 -m pip install --upgrade pip
23:30:08+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
23:30:08++ deactivate nondestructive
23:30:08++ '[' -n '' ']'
23:30:08++ '[' -n '' ']'
23:30:08++ hash -r
23:30:08++ '[' -n '' ']'
23:30:08++ unset VIRTUAL_ENV
23:30:08++ unset VIRTUAL_ENV_PROMPT
23:30:08++ '[' '!' nondestructive = nondestructive ']'
23:30:08++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
23:30:08++ export VIRTUAL_ENV
23:30:08++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:30:08++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:30:08++ export PATH
23:30:08++ '[' -n '' ']'
23:30:08++ '[' -z '' ']'
23:30:08++ _OLD_VIRTUAL_PS1=
23:30:08++ PS1='(omero-virtualenv) '
23:30:08++ export PS1
23:30:08++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
23:30:08++ export VIRTUAL_ENV_PROMPT
23:30:08++ hash -r
23:30:08+ source docs/hudson/OMERO.sh
23:30:08++ set -e
23:30:08++ set -u
23:30:08++ set -x
23:30:08++ source docs/hudson/functions.sh
23:30:08++ echo Building merge_ci
23:30:08Building merge_ci
23:30:08++ python3 ./build.py build-dev release-all
23:30:08Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:30:1023:30:10check-ivy:
23:30:10Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
23:30:10Created dir: /home/omero/workspace/OMERO-build/src/target
23:30:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:30:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:30:1223:30:12build-scons:
23:30:12Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:30:14No sub-builds to iterate on
23:30:14Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:30:1423:30:14buildlist:
23:30:14:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:30:14:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:30:1523:30:15clean:
23:30:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:30:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:30:1623:30:16python-clean:
23:30:16WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:30:16/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-af317af826-ice36-b112') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:30:16 warnings.warn(
23:30:16running clean
23:30:16Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
23:30:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:30:1723:30:17python-clean:
23:30:17WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:30:17/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-af317af826-ice36-b112') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:30:17 warnings.warn(
23:30:17running clean
23:30:17Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
23:30:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:30:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:30:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:30:1923:30:19python-clean:
23:30:19WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:30:19/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-af317af826-ice36-b112') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:30:19 warnings.warn(
23:30:19running clean
23:30:19Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
23:30:19Deleting directory /home/omero/workspace/OMERO-build/src/target
23:30:2023:30:20build-scons:
23:30:20Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:30:2223:30:22build:
23:30:22No sub-builds to iterate on
23:30:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:30:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:30:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:30:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:30:2323:30:23tools-init:
23:30:23no-op
23:30:2423:30:24retrieve:
23:30:24:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:30:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:32:3923:32:39prepare:
23:32:39Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:32:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
23:32:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
23:32:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:32:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:32:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:32:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
23:32:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:32:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:32:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:32:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:32:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:32:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:32:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:32:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:32:3923:32:39pre-compile:
23:32:39Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:32:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:32:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:32:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:32:53Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:32:5523:32:55compile:
23:32:55no-op
23:32:5523:32:55package:
23:32:55Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
23:32:5923:32:59install:
23:32:59:: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-689-af317af826-ice36-b112 :: integration :: Fri Oct 16 23:30:23 UTC 2026
23:32:59 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
23:32:59:: publishing :: omero#omero_client
23:32:59 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-689-af317af826-ice36-b112/omero_client-5.6.3-689-af317af826-ice36-b112.jar
23:32:59 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-689-af317af826-ice36-b112/omero_client-5.6.3-689-af317af826-ice36-b112.xml
23:33:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:33:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:33:0023:33:00retrieve:
23:33:00:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:33:00:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:33:01Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:33:0123:33:01dist:
23:33:01Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
23:33:01Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
23:33:01Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:33:01Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:33:02Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
23:33:02Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
23:33:02Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
23:33:03Entering /home/omero/workspace/OMERO-build/src/components/tests...
23:33:03Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:33:0523:33:05copy-licenses:
23:33:05Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:33:05Created dir: /home/omero/workspace/OMERO-build/src/dist/share
23:33:05Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
23:33:0523:33:05copy-history:
23:33:05Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:33:0523:33:05copy-etc:
23:33:05Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
23:33:06Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
23:33:0623:33:06copy-sql:
23:33:06Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
23:33:3823:33:38copy-server:
23:33:38 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
23:33:38 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
23:33:4623:33:46copy-client:
23:33:46Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
23:33:52 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
23:33:52 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
23:33:5723:33:57update-version:
23:33:57Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
23:33:5723:33:57create-workdirs:
23:33:57Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
23:33:57Created dir: /home/omero/workspace/OMERO-build/src/dist/var
23:33:57Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
23:33:5723:33:57copy-luts:
23:33:57Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:33:57Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:33:5823:33:58test-compile:
23:33:58:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:33:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:33:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:33:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:33:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:33:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:34:00Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:34:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:34:0123:34:01testng-init:
23:34:01:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:34:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:34:1223:34:12,605 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
23:34:1223:34:12,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@401e5e83 - No custom configurators were discovered as a service.
23:34:1223:34:12,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@401e5e83 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
23:34:1223:34:12,612 |-INFO in ch.qos.logback.classic.util.ContextInitializer@401e5e83 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
23:34:1223:34:12,616 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
23:34:1223:34:12,620 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
23:34:1223:34:12,621 |-INFO in ch.qos.logback.classic.util.ContextInitializer@401e5e83 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 9 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
23:34:1223:34:12,621 |-INFO in ch.qos.logback.classic.util.ContextInitializer@401e5e83 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
23:34:1223:34:12,623 |-INFO in ch.qos.logback.classic.util.ContextInitializer@401e5e83 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
23:34:1223:34:12,627 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
23:34:1223:34:12,628 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:34:1223:34:12,631 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@34648b8d - Resource [logback.xml] occurs multiple times on the classpath.
23:34:1223:34:12,631 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@34648b8d - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:34:1223:34:12,631 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@34648b8d - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
23:34:1223:34:12,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
23:34:1223:34:12,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
23:34:1223:34:12,883 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
23:34:1223:34:12,887 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@38106bc4 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
23:34:1223:34:12,887 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@38106bc4 - Please move "immediateFlush" property into the enclosing appender.
23:34:1223:34:12,952 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@38106bc4 - Setting the "immediateFlush" property of the enclosing appender to true
23:34:1223:34:12,953 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
23:34:1223:34:12,953 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
23:34:1223:34:12,953 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
23:34:1223:34:12,953 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
23:34:1223:34:12,954 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
23:34:1223:34:12,954 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
23:34:1223:34:12,955 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4d031f38 - End of configuration.
23:34:1223:34:12,957 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7fdbba5d - Registering current configuration as safe fallback point
23:34:1223:34:12,957 |-INFO in ch.qos.logback.classic.util.ContextInitializer@401e5e83 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 334 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
23:34:1223:34:12lifecycle.test-compile:
23:34:12Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:34:13Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:34:13warning: [options] bootstrap class path not set in conjunction with -source 8
23:34:13warning: [options] source value 8 is obsolete and will be removed in a future release
23:34:13warning: [options] target value 8 is obsolete and will be removed in a future release
23:34:13warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
23:34:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:16import omero.grid.RawAccessRequest;
23:34:16 ^
23:34:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:16import omero.grid.RawAccessRequest;
23:34:16 ^
23:34:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:17import omero.grid.RawAccessRequest;
23:34:17 ^
23:34:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
23:34:17import omero.model.ImportJob;
23:34:17 ^
23:34:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:34:17import omero.model.ImportJobI;
23:34:17 ^
23:34:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
23:34:17 IObject link = (IObject) linkClass.newInstance();
23:34:17 ^
23:34:17 where T is a type-variable:
23:34:17 T extends Object declared in class Class
23:34:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
23:34:18 T copy = (T) obj.getClass().newInstance();
23:34:18 ^
23:34:18 where T is a type-variable:
23:34:18 T extends Object declared in class Class
23:34:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:18 RawAccessRequest raw = new RawAccessRequest();
23:34:18 ^
23:34:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:18 RawAccessRequest raw = new RawAccessRequest();
23:34:18 ^
23:34:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:34:18 raw.repoUuid = legacy.root().getHash().getValue();
23:34:18 ^
23:34:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
23:34:18 raw.command = "rm";
23:34:18 ^
23:34:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
23:34:18 raw.args = Arrays.asList(path);
23:34:18 ^
23:34:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
23:34:18 final IObject link = linkClass.newInstance();
23:34:18 ^
23:34:18 where T is a type-variable:
23:34:18 T extends Object declared in class Class
23:34:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
23:34:18 originalLink.setChild(annotationClass.newInstance());
23:34:18 ^
23:34:18 where T is a type-variable:
23:34:18 T extends Object declared in class Class
23:34:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:34:18 RoiResult r = svc.findByImage(id, new RoiOptions());
23:34:18 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:19 final RawAccessRequest request = new RawAccessRequest();
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:19 final RawAccessRequest request = new RawAccessRequest();
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:34:19 request.repoUuid = repo.root().getHash().getValue();
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
23:34:19 request.command = "exists";
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
23:34:19 request.args = Collections.singletonList(dirPath);
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:19 final RawAccessRequest request = new RawAccessRequest();
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:34:19 final RawAccessRequest request = new RawAccessRequest();
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:34:19 request.repoUuid = repo.root().getHash().getValue();
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
23:34:19 request.command = "exists";
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
23:34:19 request.args = Collections.singletonList(dirName);
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:34:19 RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
23:34:19 final ImportJob importJob = new ImportJobI();
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:34:19 final ImportJob importJob = new ImportJobI();
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
23:34:19 importJob.setImageName(omero.rtypes.rstring(name));
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
23:34:19 importJob.setImageDescription(omero.rtypes.rstring(desc));
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:34:19 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:34:19 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:34:19 final String savedName = sent.getImageName().getValue().toString();
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:34:19 final String savedDesc = sent.getImageDescription().getValue().toString();
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:34:19 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:34:19 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:34:19 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
23:34:19 ^
23:34:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:34:19 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
23:34:19 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:34:20 RoiResult r = svc.findByImage(image.getId().getValue(),
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:20 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:20 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:20 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:20 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
23:34:20 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:20 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
23:34:20 table = svc.getTable(f.getId().getValue());
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:34:20 RoiResult r = svc.findByImage(image.getId().getValue(),
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:34:20 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:34:20 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:34:20 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:34:20 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:20 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:20 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:20 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:20 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
23:34:20 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:20 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:20 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:20 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:20 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:34:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:34:20 svc.getShapeStatsRestricted(
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:34:20 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:34:20 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:34:20 request.typesToIgnore = Collections.singletonList("TagAnnotation");
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:34:20 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:34:20 request.typesToIgnore = Collections.singletonList("Annotation");
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:34:20 request.typesToIgnore = Collections.singletonList("Annotation");
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:34:20 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:34:20 p2.setRelatedTo(p1);
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:34:20 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:34:20 pixels1.setRelatedTo(pixels2);
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:34:20 Pixels pixels = pixels1.getRelatedTo();
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:34:20 Assert.assertNull(pixels1.getRelatedTo());
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:34:20 pixels1.setRelatedTo(pixels2);
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:34:20 Pixels pixels = pixels1.getRelatedTo();
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:34:20 Assert.assertNull(pixels1.getRelatedTo());
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:20 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:20 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:20 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:34:20 ^
23:34:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:34:20 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:34:20 ^
23:34:21Note: Some input files use unchecked or unsafe operations.
23:34:21Note: Recompile with -Xlint:unchecked for details.
23:34:2192 warnings
23:34:21Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2075811077.tmp
23:34:21Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
23:34:21:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:34:21:: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-689-af317af826-ice36-b112 :: integration :: Fri Oct 16 23:34:00 UTC 2026
23:34:21 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
23:34:21:: publishing :: omero#OmeroJava-test
23:34:21 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-689-af317af826-ice36-b112.jar
23:34:21 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-689-af317af826-ice36-b112.xml
23:34:2123:34:21build-eclipse:
23:34:21No sub-builds to iterate on
23:34:22Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:34:2223:34:22retrieve:
23:34:22:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:34:22:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:34:2723:34:27prepare:
23:34:27Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:34:3123:34:31release-clients:
23:34:31Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-689-af317af826-ice36-b112.zip
23:34:3823:34:38release-zip:
23:34:38Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-689-af317af826-ice36-b112.zip
23:34:5123:34:51BUILD SUCCESSFUL
23:34:51Total time: 4 minutes 42 seconds
23:34:51++ '[' -d .git ']'
23:34:51++ python3 ./build.py release-src
23:34:51Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:34:5223:34:52release-src-git:
23:34:52Releasing openmicroscopy-5.6.3-689-af317af826-ice36-b112
23:34:54 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-689-af317af826-ice36-b112.zip
23:34:54 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-689-af317af826-ice36-b112-base.zip
23:34:5623:34:56BUILD SUCCESSFUL
23:34:56Total time: 4 seconds
23:34:56++ echo BUILD_NUMBER=112
23:34:56++ echo OMERO_BRANCH=merge_ci
23:34:56++ git_info
23:34:56+++ git rev-parse HEAD
23:34:56++ HEAD=af317af826a6c28e54d7ef3dee5cd40835c9f683
23:34:56++ git log --max-count=1 af317af826a6c28e54d7ef3dee5cd40835c9f683
23:34:56++ env
23:34:56++ sort
23:34:56Archiving artifacts
23:35:13Finished: SUCCESS
