23:23:54Started by upstream project "Trigger" build number 13423:23:54originally caused by:
23:23:54 Started by timer
23:23:54Running as SYSTEM
23:23:54Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
23:23:54The recommended git tool is: NONE
23:23:54No credentials specified
23:23:54 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
23:23:54Fetching changes from the remote Git repository
23:23:54 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
23:23:54Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git23:23:54 > git --version # timeout=10
23:23:54 > git --version # 'git version 2.52.0'
23:23:54 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
23:24:01 > git rev-parse origin/merge_ci^{commit} # timeout=10
23:24:01Checking out Revision 0f7ce8ff9a533da189043eaef68da488e72ea766 (origin/merge_ci)
23:24:01 > git config core.sparsecheckout # timeout=10
23:24:01 > git checkout -f 0f7ce8ff9a533da189043eaef68da488e72ea766 # timeout=10
23:24:03Commit message: "Add version.properties to etc/omero.properties"
23:24:03 > git rev-list --no-walk f12b1008f65f8da474f831c2d0eee171f5aed8b1 # timeout=10
23:24:04Cleaning workspace
23:24:04 > git rev-parse --verify HEAD # timeout=10
23:24:04Resetting working tree
23:24:04 > git reset --hard # timeout=10
23:24:04 > git clean -fdx # timeout=10
23:24:50Copied 6 artifacts from "OMERO-python-superbuild-build" build number 10423:24:50[OMERO-build] $ /bin/bash -xe /tmp/jenkins6936200368446001753.sh
23:24:50+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
23:24:50+ cd src
23:24:50+ export OMERO_BRANCH=merge_ci
23:24:50+ OMERO_BRANCH=merge_ci
23:24:50+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
23:24:50+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
23:25:27+ source /home/omero/settings.env
23:25:27++ OMERO_DB_HOST=pg
23:25:27++ OMERO_DB_USER=postgres
23:25:27++ OMERO_DB_PASS=
23:25:27++ OMERO_ROOT_PASS=omero
23:25:27++ OMERO_DATA_DIR=/OMERO
23:25:27++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
23:25:27+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
23:25:46+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl23:25:47Collecting zeroc-ice==3.6.5
23:25:48 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
23:25:50 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.7 MB/s eta 0:00:00
23:25:50Installing collected packages: zeroc-ice
23:25:54Successfully installed zeroc-ice-3.6.5
23:25:5423:25:54[notice] A new release of pip available: 22.3.1 -> 26.2.1
23:25:54[notice] To update, run: python3.11 -m pip install --upgrade pip
23:25:54+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
23:25:55Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
23:25:55Collecting setuptools<66
23:25:55 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
23:25:55Collecting omero-py
23:25:55 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
23:25:56Collecting appdirs
23:25:56 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
23:25:56Collecting future
23:25:56 Using cached future-1.0.0-py3-none-any.whl (491 kB)
23:25:56Collecting numpy<3,>=2
23:25:57 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
23:25:57Collecting Pillow>=10.0.0
23:25:57 Using cached pillow-13.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
23:25:58Collecting PyYAML
23:25:58 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
23:25:58Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
23:25:58Collecting requests
23:25:58 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
23:25:58Collecting portalocker
23:25:58 Using cached portalocker-4.4.1-py3-none-any.whl (129 kB)
23:25:59Collecting charset_normalizer<4,>=2
23:25:59 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB)
23:25:59Collecting idna<4,>=2.5
23:25:59 Using cached idna-3.20-py3-none-any.whl (69 kB)
23:25:59Collecting urllib3<3,>=1.26
23:25:59 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB)
23:25:59Collecting certifi>=2023.5.7
23:25:59 Downloading certifi-2026.10.18-py3-none-any.whl (134 kB)
23:25:59 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 134.1/134.1 kB 2.3 MB/s eta 0:00:00
23:25:59Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
23:26:00 Attempting uninstall: setuptools
23:26:01 Found existing installation: setuptools 65.5.1
23:26:01 Uninstalling setuptools-65.5.1:
23:26:01 Successfully uninstalled setuptools-65.5.1
23:26:51Successfully installed Pillow-13.0.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.10.18 charset_normalizer-3.5.2 future-1.0.0 idna-3.20 numpy-2.4.6 omero-py-5.23.0 portalocker-4.4.1 requests-2.34.2 setuptools-65.7.0 urllib3-2.8.0
23:26:5123:26:51[notice] A new release of pip available: 22.3.1 -> 26.2.1
23:26:51[notice] To update, run: python3.11 -m pip install --upgrade pip
23:26:51+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
23:26:51++ deactivate nondestructive
23:26:51++ '[' -n '' ']'
23:26:51++ '[' -n '' ']'
23:26:51++ hash -r
23:26:51++ '[' -n '' ']'
23:26:51++ unset VIRTUAL_ENV
23:26:51++ unset VIRTUAL_ENV_PROMPT
23:26:51++ '[' '!' nondestructive = nondestructive ']'
23:26:51++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
23:26:51++ export VIRTUAL_ENV
23:26:51++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:26:51++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:26:51++ export PATH
23:26:51++ '[' -n '' ']'
23:26:51++ '[' -z '' ']'
23:26:51++ _OLD_VIRTUAL_PS1=
23:26:51++ PS1='(omero-virtualenv) '
23:26:51++ export PS1
23:26:51++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
23:26:51++ export VIRTUAL_ENV_PROMPT
23:26:51++ hash -r
23:26:51+ source docs/hudson/OMERO.sh
23:26:51++ set -e
23:26:51++ set -u
23:26:51++ set -x
23:26:51++ source docs/hudson/functions.sh
23:26:51++ echo Building merge_ci
23:26:51Building merge_ci
23:26:51++ python3 ./build.py build-dev release-all
23:26:51Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:26:5323:26:53check-ivy:
23:26:53Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
23:26:53Created dir: /home/omero/workspace/OMERO-build/src/target
23:26:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:26:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:26:5423:26:54build-scons:
23:26:54Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:26:56No sub-builds to iterate on
23:26:57Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:26:5723:26:57buildlist:
23:26:57:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:26:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:26:5723:26:57clean:
23:26:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:26:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:26:5823:26:58python-clean:
23:26:58WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:26:58/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-0f7ce8ff9a-ice36-b114') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:26:58 warnings.warn(
23:26:58running clean
23:26:58Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
23:26:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:26:5923:26:59python-clean:
23:26:59WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:26:59/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-0f7ce8ff9a-ice36-b114') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:26:59 warnings.warn(
23:27:00running clean
23:27:00Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
23:27:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:27:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:27:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:27:0123:27:01python-clean:
23:27:01WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:27:01/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-0f7ce8ff9a-ice36-b114') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:27:01 warnings.warn(
23:27:01running clean
23:27:01Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
23:27:01Deleting directory /home/omero/workspace/OMERO-build/src/target
23:27:0323:27:03build-scons:
23:27:03Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:27:0423:27:04build:
23:27:04No sub-builds to iterate on
23:27:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:27:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:27:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:27:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:27:0623:27:06tools-init:
23:27:06no-op
23:27:0623:27:06retrieve:
23:27:06:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:27:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:29:1723:29:17prepare:
23:29:17Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:29:17Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
23:29:17Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
23:29:17Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:29:17Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:29:17Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:29:17Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
23:29:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:29:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:29:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:29:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:29:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:29:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:29:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:29:17Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:29:1723:29:17pre-compile:
23:29:17Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:29:19Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:29:25Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:29:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:29:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:29:3123:29:31compile:
23:29:31no-op
23:29:3223:29:32package:
23:29:32Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
23:29:3623:29:36install:
23:29:36:: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-689-0f7ce8ff9a-ice36-b114 :: integration :: Sun Oct 18 23:27:05 UTC 2026
23:29:36 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
23:29:36:: publishing :: omero#omero_client
23:29:36 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-689-0f7ce8ff9a-ice36-b114/omero_client-5.6.3-689-0f7ce8ff9a-ice36-b114.jar
23:29:36 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-689-0f7ce8ff9a-ice36-b114/omero_client-5.6.3-689-0f7ce8ff9a-ice36-b114.xml
23:29:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:29:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:29:3723:29:37retrieve:
23:29:37:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:29:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:29:38Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:29:3823:29:38dist:
23:29:38Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
23:29:38Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
23:29:38Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:29:38Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:29:38Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
23:29:39Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
23:29:39Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
23:29:40Entering /home/omero/workspace/OMERO-build/src/components/tests...
23:29:40Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:29:4223:29:42copy-licenses:
23:29:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:29:42Created dir: /home/omero/workspace/OMERO-build/src/dist/share
23:29:42Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
23:29:4223:29:42copy-history:
23:29:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:29:4223:29:42copy-etc:
23:29:42Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
23:29:43Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
23:29:4323:29:43copy-sql:
23:29:43Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
23:30:2323:30:23copy-server:
23:30:23 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
23:30:23 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
23:30:3123:30:31copy-client:
23:30:31Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
23:30:38 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
23:30:38 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
23:30:4223:30:42update-version:
23:30:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
23:30:4223:30:42create-workdirs:
23:30:42Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
23:30:42Created dir: /home/omero/workspace/OMERO-build/src/dist/var
23:30:42Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
23:30:4223:30:42copy-luts:
23:30:42Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:30:43Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:30:4323:30:43test-compile:
23:30:43:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:30:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:30:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:30:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:30:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:30:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:30:46Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:30:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:30:4623:30:46testng-init:
23:30:46:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:30:46:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:30:5823:30:57,808 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
23:30:5823:30:57,812 |-INFO in ch.qos.logback.classic.util.ContextInitializer@12949ce - No custom configurators were discovered as a service.
23:30:5823:30:57,812 |-INFO in ch.qos.logback.classic.util.ContextInitializer@12949ce - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
23:30:5823:30:57,816 |-INFO in ch.qos.logback.classic.util.ContextInitializer@12949ce - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
23:30:5823:30:57,821 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
23:30:5823:30:57,824 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
23:30:5823:30:57,825 |-INFO in ch.qos.logback.classic.util.ContextInitializer@12949ce - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 9 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
23:30:5823:30:57,825 |-INFO in ch.qos.logback.classic.util.ContextInitializer@12949ce - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
23:30:5823:30:57,829 |-INFO in ch.qos.logback.classic.util.ContextInitializer@12949ce - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
23:30:5823:30:57,833 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
23:30:5823:30:57,834 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:30:5823:30:57,837 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@238212e4 - Resource [logback.xml] occurs multiple times on the classpath.
23:30:5823:30:57,837 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@238212e4 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:30:5823:30:57,837 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@238212e4 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
23:30:5823:30:58,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
23:30:5823:30:58,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
23:30:5823:30:58,092 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
23:30:5823:30:58,094 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@57f3ad72 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
23:30:5823:30:58,094 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@57f3ad72 - Please move "immediateFlush" property into the enclosing appender.
23:30:5823:30:58,160 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@57f3ad72 - Setting the "immediateFlush" property of the enclosing appender to true
23:30:5823:30:58,161 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
23:30:5823:30:58,161 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
23:30:5823:30:58,161 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
23:30:5823:30:58,161 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
23:30:5823:30:58,161 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
23:30:5823:30:58,161 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
23:30:5823:30:58,163 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3027ba9b - End of configuration.
23:30:5823:30:58,165 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7b0be268 - Registering current configuration as safe fallback point
23:30:5823:30:58,165 |-INFO in ch.qos.logback.classic.util.ContextInitializer@12949ce - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 336 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
23:30:5823:30:58lifecycle.test-compile:
23:30:58Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:30:58Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:30:58warning: [options] bootstrap class path not set in conjunction with -source 8
23:30:58warning: [options] source value 8 is obsolete and will be removed in a future release
23:30:58warning: [options] target value 8 is obsolete and will be removed in a future release
23:30:58warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
23:31:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:01import omero.grid.RawAccessRequest;
23:31:01 ^
23:31:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:02import omero.grid.RawAccessRequest;
23:31:02 ^
23:31:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:02import omero.grid.RawAccessRequest;
23:31:02 ^
23:31:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
23:31:02import omero.model.ImportJob;
23:31:02 ^
23:31:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:31:02import omero.model.ImportJobI;
23:31:02 ^
23:31:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
23:31:03 IObject link = (IObject) linkClass.newInstance();
23:31:03 ^
23:31:03 where T is a type-variable:
23:31:03 T extends Object declared in class Class
23:31:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
23:31:03 T copy = (T) obj.getClass().newInstance();
23:31:03 ^
23:31:03 where T is a type-variable:
23:31:03 T extends Object declared in class Class
23:31:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:03 RawAccessRequest raw = new RawAccessRequest();
23:31:03 ^
23:31:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:03 RawAccessRequest raw = new RawAccessRequest();
23:31:03 ^
23:31:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:31:03 raw.repoUuid = legacy.root().getHash().getValue();
23:31:03 ^
23:31:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
23:31:03 raw.command = "rm";
23:31:03 ^
23:31:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
23:31:03 raw.args = Arrays.asList(path);
23:31:03 ^
23:31:03/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
23:31:03 final IObject link = linkClass.newInstance();
23:31:03 ^
23:31:03 where T is a type-variable:
23:31:03 T extends Object declared in class Class
23:31:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
23:31:04 originalLink.setChild(annotationClass.newInstance());
23:31:04 ^
23:31:04 where T is a type-variable:
23:31:04 T extends Object declared in class Class
23:31:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:31:04 RoiResult r = svc.findByImage(id, new RoiOptions());
23:31:04 ^
23:31:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:04 final RawAccessRequest request = new RawAccessRequest();
23:31:04 ^
23:31:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:04 final RawAccessRequest request = new RawAccessRequest();
23:31:04 ^
23:31:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:31:04 request.repoUuid = repo.root().getHash().getValue();
23:31:04 ^
23:31:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
23:31:04 request.command = "exists";
23:31:04 ^
23:31:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
23:31:04 request.args = Collections.singletonList(dirPath);
23:31:04 ^
23:31:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:04 final RawAccessRequest request = new RawAccessRequest();
23:31:04 ^
23:31:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:31:04 final RawAccessRequest request = new RawAccessRequest();
23:31:04 ^
23:31:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:31:04 request.repoUuid = repo.root().getHash().getValue();
23:31:04 ^
23:31:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
23:31:04 request.command = "exists";
23:31:04 ^
23:31:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
23:31:04 request.args = Collections.singletonList(dirName);
23:31:04 ^
23:31:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:31:04 RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
23:31:04 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
23:31:05 final ImportJob importJob = new ImportJobI();
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:31:05 final ImportJob importJob = new ImportJobI();
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
23:31:05 importJob.setImageName(omero.rtypes.rstring(name));
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
23:31:05 importJob.setImageDescription(omero.rtypes.rstring(desc));
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:31:05 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:31:05 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:31:05 final String savedName = sent.getImageName().getValue().toString();
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:31:05 final String savedDesc = sent.getImageDescription().getValue().toString();
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:31:05 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:31:05 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:31:05 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:31:05 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:31:05 RoiResult r = svc.findByImage(image.getId().getValue(),
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:31:05 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:31:05 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:31:05 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:31:05 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
23:31:05 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:31:05 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
23:31:05 table = svc.getTable(f.getId().getValue());
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:31:05 RoiResult r = svc.findByImage(image.getId().getValue(),
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:31:05 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:31:05 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:31:05 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:31:05 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:31:05 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:31:05 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:31:05 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:31:05 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
23:31:05 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:31:05 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:31:05 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:31:05 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:31:05 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:31:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:31:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:31:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:31:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:31:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:31:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:31:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:31:05 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:31:05 svc.getShapeStatsRestricted(
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:31:05 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
23:31:05 ^
23:31:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:31:05 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:31:05 ^
23:31:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:31:06 request.typesToIgnore = Collections.singletonList("TagAnnotation");
23:31:06 ^
23:31:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:31:06 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
23:31:06 ^
23:31:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:31:06 request.typesToIgnore = Collections.singletonList("Annotation");
23:31:06 ^
23:31:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:31:06 request.typesToIgnore = Collections.singletonList("Annotation");
23:31:06 ^
23:31:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:31:06 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:31:06 ^
23:31:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:31:06 p2.setRelatedTo(p1);
23:31:06 ^
23:31:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:31:06 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
23:31:06 ^
23:31:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:31:06 pixels1.setRelatedTo(pixels2);
23:31:06 ^
23:31:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:31:06 Pixels pixels = pixels1.getRelatedTo();
23:31:06 ^
23:31:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:31:06 Assert.assertNull(pixels1.getRelatedTo());
23:31:06 ^
23:31:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:31:06 pixels1.setRelatedTo(pixels2);
23:31:06 ^
23:31:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:31:06 Pixels pixels = pixels1.getRelatedTo();
23:31:06 ^
23:31:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:31:06 Assert.assertNull(pixels1.getRelatedTo());
23:31:06 ^
23:31:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:31:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:31:06 ^
23:31:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:31:06 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:31:06 ^
23:31:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:31:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:31:06 ^
23:31:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:31:06 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:31:06 ^
23:31:06Note: Some input files use unchecked or unsafe operations.
23:31:06Note: Recompile with -Xlint:unchecked for details.
23:31:0692 warnings
23:31:06Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2052424605.tmp
23:31:06Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
23:31:07:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:31:07:: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-689-0f7ce8ff9a-ice36-b114 :: integration :: Sun Oct 18 23:30:46 UTC 2026
23:31:07 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
23:31:07:: publishing :: omero#OmeroJava-test
23:31:07 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-689-0f7ce8ff9a-ice36-b114.jar
23:31:07 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-689-0f7ce8ff9a-ice36-b114.xml
23:31:0723:31:07build-eclipse:
23:31:07No sub-builds to iterate on
23:31:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:31:0823:31:08retrieve:
23:31:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:31:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:31:1323:31:13prepare:
23:31:13Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:31:1723:31:17release-clients:
23:31:17Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-689-0f7ce8ff9a-ice36-b114.zip
23:31:2423:31:24release-zip:
23:31:24Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-689-0f7ce8ff9a-ice36-b114.zip
23:31:3823:31:38BUILD SUCCESSFUL
23:31:38Total time: 4 minutes 46 seconds
23:31:38++ '[' -d .git ']'
23:31:38++ python3 ./build.py release-src
23:31:38Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:31:3923:31:39release-src-git:
23:31:39Releasing openmicroscopy-5.6.3-689-0f7ce8ff9a-ice36-b114
23:31:41 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-689-0f7ce8ff9a-ice36-b114.zip
23:31:41 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-689-0f7ce8ff9a-ice36-b114-base.zip
23:31:4223:31:42BUILD SUCCESSFUL
23:31:42Total time: 4 seconds
23:31:42++ echo BUILD_NUMBER=114
23:31:42++ echo OMERO_BRANCH=merge_ci
23:31:42++ git_info
23:31:42+++ git rev-parse HEAD
23:31:42++ HEAD=0f7ce8ff9a533da189043eaef68da488e72ea766
23:31:42++ git log --max-count=1 0f7ce8ff9a533da189043eaef68da488e72ea766
23:31:42++ env
23:31:42++ sort
23:31:42Archiving artifacts
23:32:00Finished: SUCCESS
