23:32:44Started by upstream project "Trigger" build number 13623:32:44originally caused by:
23:32:44 Started by timer
23:32:44Running as SYSTEM
23:32:44Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
23:32:44The recommended git tool is: NONE
23:32:44No credentials specified
23:32:44 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
23:32:44Fetching changes from the remote Git repository
23:32:44 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
23:32:44Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git23:32:44 > git --version # timeout=10
23:32:44 > git --version # 'git version 2.52.0'
23:32:44 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
23:32:51 > git rev-parse origin/merge_ci^{commit} # timeout=10
23:32:51Checking out Revision 4798aa03c8bdb38d18506a143519cd7ad125794e (origin/merge_ci)
23:32:51 > git config core.sparsecheckout # timeout=10
23:32:51 > git checkout -f 4798aa03c8bdb38d18506a143519cd7ad125794e # timeout=10
23:33:07Commit message: "Add version.properties to etc/omero.properties"
23:33:07 > git rev-list --no-walk 02c2e39781df63e5de33d6c4423a526f77aa4ae1 # timeout=10
23:33:07Cleaning workspace
23:33:07 > git rev-parse --verify HEAD # timeout=10
23:33:07Resetting working tree
23:33:07 > git reset --hard # timeout=10
23:33:08 > git clean -fdx # timeout=10
23:33:51Copied 6 artifacts from "OMERO-python-superbuild-build" build number 10623:33:51[OMERO-build] $ /bin/bash -xe /tmp/jenkins3941063034581592381.sh
23:33:51+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
23:33:51+ cd src
23:33:51+ export OMERO_BRANCH=merge_ci
23:33:51+ OMERO_BRANCH=merge_ci
23:33:51+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
23:33:51+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
23:34:26+ source /home/omero/settings.env
23:34:26++ OMERO_DB_HOST=pg
23:34:26++ OMERO_DB_USER=postgres
23:34:26++ OMERO_DB_PASS=
23:34:26++ OMERO_ROOT_PASS=omero
23:34:26++ OMERO_DATA_DIR=/OMERO
23:34:26++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
23:34:26+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
23:34:45+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl23:34:46Collecting zeroc-ice==3.6.5
23:34:47 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
23:34:49 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.4 MB/s eta 0:00:00
23:34:49Installing collected packages: zeroc-ice
23:34:53Successfully installed zeroc-ice-3.6.5
23:34:5323:34:53[notice] A new release of pip available: 22.3.1 -> 26.2.1
23:34:53[notice] To update, run: python3.11 -m pip install --upgrade pip
23:34:53+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
23:34:54Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
23:34:54Collecting setuptools<66
23:34:54 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
23:34:54Collecting omero-py
23:34:55 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
23:34:55Collecting appdirs
23:34:55 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
23:34:55Collecting future
23:34:55 Using cached future-1.0.0-py3-none-any.whl (491 kB)
23:34:55Collecting numpy<3,>=2
23:34:56 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
23:34:56Collecting Pillow>=10.0.0
23:34:56 Using cached pillow-13.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
23:34:57Collecting PyYAML
23:34:57 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
23:34:57Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
23:34:57Collecting requests
23:34:57 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
23:34:57Collecting portalocker
23:34:57 Using cached portalocker-4.4.1-py3-none-any.whl (129 kB)
23:34:57Collecting charset_normalizer<4,>=2
23:34:57 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB)
23:34:57Collecting idna<4,>=2.5
23:34:58 Using cached idna-3.20-py3-none-any.whl (69 kB)
23:34:58Collecting urllib3<3,>=1.26
23:34:58 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB)
23:34:58Collecting certifi>=2023.5.7
23:34:58 Downloading certifi-2026.10.19-py3-none-any.whl (136 kB)
23:34:58 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 136.5/136.5 kB 2.4 MB/s eta 0:00:00
23:34:58Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
23:34:59 Attempting uninstall: setuptools
23:34:59 Found existing installation: setuptools 65.5.1
23:35:00 Uninstalling setuptools-65.5.1:
23:35:00 Successfully uninstalled setuptools-65.5.1
23:35:51Successfully installed Pillow-13.0.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.10.19 charset_normalizer-3.5.2 future-1.0.0 idna-3.20 numpy-2.4.6 omero-py-5.23.0 portalocker-4.4.1 requests-2.34.2 setuptools-65.7.0 urllib3-2.8.0
23:35:5123:35:51[notice] A new release of pip available: 22.3.1 -> 26.2.1
23:35:51[notice] To update, run: python3.11 -m pip install --upgrade pip
23:35:52+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
23:35:52++ deactivate nondestructive
23:35:52++ '[' -n '' ']'
23:35:52++ '[' -n '' ']'
23:35:52++ hash -r
23:35:52++ '[' -n '' ']'
23:35:52++ unset VIRTUAL_ENV
23:35:52++ unset VIRTUAL_ENV_PROMPT
23:35:52++ '[' '!' nondestructive = nondestructive ']'
23:35:52++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
23:35:52++ export VIRTUAL_ENV
23:35:52++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:35:52++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:35:52++ export PATH
23:35:52++ '[' -n '' ']'
23:35:52++ '[' -z '' ']'
23:35:52++ _OLD_VIRTUAL_PS1=
23:35:52++ PS1='(omero-virtualenv) '
23:35:52++ export PS1
23:35:52++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
23:35:52++ export VIRTUAL_ENV_PROMPT
23:35:52++ hash -r
23:35:52+ source docs/hudson/OMERO.sh
23:35:52++ set -e
23:35:52++ set -u
23:35:52++ set -x
23:35:52++ source docs/hudson/functions.sh
23:35:52++ echo Building merge_ci
23:35:52Building merge_ci
23:35:52++ python3 ./build.py build-dev release-all
23:35:52Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:35:5323:35:53check-ivy:
23:35:53Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
23:35:53Created dir: /home/omero/workspace/OMERO-build/src/target
23:35:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:35:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:35:5523:35:55build-scons:
23:35:55Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:35:56No sub-builds to iterate on
23:35:57Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:35:5723:35:57buildlist:
23:35:57:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:35:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:35:5723:35:57clean:
23:35:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:35:58Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:35:5823:35:58python-clean:
23:35:58WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:35:58/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-4798aa03c8-ice36-b116') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:35:58 warnings.warn(
23:35:59running clean
23:35:59Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
23:35:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:36:0023:36:00python-clean:
23:36:00WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:36:00/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-4798aa03c8-ice36-b116') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:36:00 warnings.warn(
23:36:00running clean
23:36:00Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
23:36:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:36:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:36:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:36:0123:36:01python-clean:
23:36:01WARNING: '' not a valid package name; please use only .-separated package names in setup.py
23:36:01/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-689-4798aa03c8-ice36-b116') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
23:36:01 warnings.warn(
23:36:01running clean
23:36:01Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
23:36:01Deleting directory /home/omero/workspace/OMERO-build/src/target
23:36:0223:36:02build-scons:
23:36:02Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
23:36:0423:36:04build:
23:36:04No sub-builds to iterate on
23:36:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:36:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:36:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:36:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:36:0623:36:06tools-init:
23:36:06no-op
23:36:0623:36:06retrieve:
23:36:06:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:36:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:38:3023:38:30prepare:
23:38:30Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:38:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
23:38:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
23:38:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:38:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:38:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:38:30Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
23:38:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:38:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:38:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:38:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:38:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:38:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:38:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
23:38:30Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
23:38:3023:38:30pre-compile:
23:38:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:38:32Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:38:39Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:38:43Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:38:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
23:38:4623:38:46compile:
23:38:46no-op
23:38:4623:38:46package:
23:38:46Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
23:38:5023:38:50install:
23:38:50:: delivering :: omero#omero_client;working@5ffef7c1fdfa :: 5.6.3-689-4798aa03c8-ice36-b116 :: integration :: Tue Oct 20 23:36:05 UTC 2026
23:38:50 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
23:38:50:: publishing :: omero#omero_client
23:38:50 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-689-4798aa03c8-ice36-b116/omero_client-5.6.3-689-4798aa03c8-ice36-b116.jar
23:38:50 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-689-4798aa03c8-ice36-b116/omero_client-5.6.3-689-4798aa03c8-ice36-b116.xml
23:38:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:38:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:38:5123:38:51retrieve:
23:38:51:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:38:51:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:38:52Entering /home/omero/workspace/OMERO-build/src/components/tools...
23:38:5223:38:52dist:
23:38:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
23:38:52Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
23:38:52Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:38:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
23:38:53Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
23:38:53Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
23:38:53Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
23:38:54Entering /home/omero/workspace/OMERO-build/src/components/tests...
23:38:54Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:38:5523:38:55copy-licenses:
23:38:55Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:38:55Created dir: /home/omero/workspace/OMERO-build/src/dist/share
23:38:55Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
23:38:5623:38:56copy-history:
23:38:56Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
23:38:5623:38:56copy-etc:
23:38:56Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
23:38:56Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
23:38:5723:38:57copy-sql:
23:38:57Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
23:39:3123:39:31copy-server:
23:39:31 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
23:39:31 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.34.6 won
23:39:3923:39:39copy-client:
23:39:39Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
23:39:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
23:39:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.34.6 won
23:39:5023:39:50update-version:
23:39:50Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
23:39:5023:39:50create-workdirs:
23:39:50Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
23:39:50Created dir: /home/omero/workspace/OMERO-build/src/dist/var
23:39:50Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
23:39:5023:39:50copy-luts:
23:39:50Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:39:50Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
23:39:5023:39:50test-compile:
23:39:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:39:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
23:39:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:39:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
23:39:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:39:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
23:39:53Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
23:39:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:39:5323:39:53testng-init:
23:39:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:39:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:40:0523:40:05,154 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
23:40:0523:40:05,158 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2cee7445 - No custom configurators were discovered as a service.
23:40:0523:40:05,158 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2cee7445 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
23:40:0523:40:05,161 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2cee7445 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
23:40:0523:40:05,166 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
23:40:0523:40:05,169 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
23:40:0523:40:05,170 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2cee7445 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 9 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
23:40:0523:40:05,170 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2cee7445 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
23:40:0523:40:05,172 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2cee7445 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
23:40:0523:40:05,174 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
23:40:0523:40:05,176 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:40:0523:40:05,178 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5514334e - Resource [logback.xml] occurs multiple times on the classpath.
23:40:0523:40:05,178 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5514334e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
23:40:0523:40:05,178 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5514334e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
23:40:0523:40:05,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
23:40:0523:40:05,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
23:40:0523:40:05,423 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
23:40:0523:40:05,425 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7acec6db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
23:40:0523:40:05,425 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7acec6db - Please move "immediateFlush" property into the enclosing appender.
23:40:0523:40:05,496 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7acec6db - Setting the "immediateFlush" property of the enclosing appender to true
23:40:0523:40:05,496 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
23:40:0523:40:05,497 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
23:40:0523:40:05,497 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
23:40:0523:40:05,497 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
23:40:0523:40:05,497 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
23:40:0523:40:05,497 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
23:40:0523:40:05,498 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1f0d5d7b - End of configuration.
23:40:0523:40:05,500 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@401e5e83 - Registering current configuration as safe fallback point
23:40:0523:40:05,500 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2cee7445 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 328 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
23:40:0523:40:05lifecycle.test-compile:
23:40:05Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:40:05Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
23:40:06warning: [options] bootstrap class path not set in conjunction with -source 8
23:40:06warning: [options] source value 8 is obsolete and will be removed in a future release
23:40:06warning: [options] target value 8 is obsolete and will be removed in a future release
23:40:06warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
23:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:40:08import omero.grid.RawAccessRequest;
23:40:08 ^
23:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:40:08import omero.grid.RawAccessRequest;
23:40:08 ^
23:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:40:08import omero.grid.RawAccessRequest;
23:40:08 ^
23:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
23:40:08import omero.model.ImportJob;
23:40:08 ^
23:40:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:40:08import omero.model.ImportJobI;
23:40:08 ^
23:40:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated
23:40:09 IObject link = (IObject) linkClass.newInstance();
23:40:09 ^
23:40:09 where T is a type-variable:
23:40:09 T extends Object declared in class Class
23:40:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
23:40:10 T copy = (T) obj.getClass().newInstance();
23:40:10 ^
23:40:10 where T is a type-variable:
23:40:10 T extends Object declared in class Class
23:40:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:40:10 RawAccessRequest raw = new RawAccessRequest();
23:40:10 ^
23:40:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:40:10 RawAccessRequest raw = new RawAccessRequest();
23:40:10 ^
23:40:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:40:10 raw.repoUuid = legacy.root().getHash().getValue();
23:40:10 ^
23:40:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
23:40:10 raw.command = "rm";
23:40:10 ^
23:40:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
23:40:10 raw.args = Arrays.asList(path);
23:40:10 ^
23:40:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
23:40:10 final IObject link = linkClass.newInstance();
23:40:10 ^
23:40:10 where T is a type-variable:
23:40:10 T extends Object declared in class Class
23:40:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
23:40:10 originalLink.setChild(annotationClass.newInstance());
23:40:10 ^
23:40:10 where T is a type-variable:
23:40:10 T extends Object declared in class Class
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:40:11 RoiResult r = svc.findByImage(id, new RoiOptions());
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:40:11 final RawAccessRequest request = new RawAccessRequest();
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:40:11 final RawAccessRequest request = new RawAccessRequest();
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:40:11 request.repoUuid = repo.root().getHash().getValue();
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
23:40:11 request.command = "exists";
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
23:40:11 request.args = Collections.singletonList(dirPath);
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:40:11 final RawAccessRequest request = new RawAccessRequest();
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
23:40:11 final RawAccessRequest request = new RawAccessRequest();
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
23:40:11 request.repoUuid = repo.root().getHash().getValue();
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
23:40:11 request.command = "exists";
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
23:40:11 request.args = Collections.singletonList(dirName);
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:40:11 RoiResult result = roiSvc.findByImage(imageId, new RoiOptions());
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
23:40:11 final ImportJob importJob = new ImportJobI();
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
23:40:11 final ImportJob importJob = new ImportJobI();
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
23:40:11 importJob.setImageName(omero.rtypes.rstring(name));
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
23:40:11 importJob.setImageDescription(omero.rtypes.rstring(desc));
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:40:11 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
23:40:11 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:40:11 final String savedName = sent.getImageName().getValue().toString();
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:40:11 final String savedDesc = sent.getImageDescription().getValue().toString();
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:40:11 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
23:40:11 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
23:40:11 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
23:40:11 ^
23:40:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
23:40:11 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
23:40:11 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:40:12 RoiResult r = svc.findByImage(image.getId().getValue(),
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:40:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:40:12 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:40:12 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:40:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
23:40:12 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:40:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
23:40:12 table = svc.getTable(f.getId().getValue());
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
23:40:12 RoiResult r = svc.findByImage(image.getId().getValue(),
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:40:12 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
23:40:12 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:40:12 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
23:40:12 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:40:12 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:40:12 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:40:12 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:40:12 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
23:40:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:40:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:40:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:40:12 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:40:12 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:40:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:40:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:40:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:40:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:40:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:40:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:40:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
23:40:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:40:12 svc.getShapeStatsRestricted(
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
23:40:12 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:40:12 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:40:12 request.typesToIgnore = Collections.singletonList("TagAnnotation");
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:40:12 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:40:12 request.typesToIgnore = Collections.singletonList("Annotation");
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
23:40:12 request.typesToIgnore = Collections.singletonList("Annotation");
23:40:12 ^
23:40:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:40:12 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
23:40:12 ^
23:40:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:40:13 p2.setRelatedTo(p1);
23:40:13 ^
23:40:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:40:13 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
23:40:13 ^
23:40:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:40:13 pixels1.setRelatedTo(pixels2);
23:40:13 ^
23:40:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:40:13 Pixels pixels = pixels1.getRelatedTo();
23:40:13 ^
23:40:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:40:13 Assert.assertNull(pixels1.getRelatedTo());
23:40:13 ^
23:40:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
23:40:13 pixels1.setRelatedTo(pixels2);
23:40:13 ^
23:40:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:40:13 Pixels pixels = pixels1.getRelatedTo();
23:40:13 ^
23:40:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
23:40:13 Assert.assertNull(pixels1.getRelatedTo());
23:40:13 ^
23:40:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:40:13 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:40:13 ^
23:40:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:40:13 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:40:13 ^
23:40:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:40:13 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
23:40:13 ^
23:40:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
23:40:13 l = svc.getRoiMeasurements(image.getId().getValue(), options);
23:40:13 ^
23:40:13Note: Some input files use unchecked or unsafe operations.
23:40:13Note: Recompile with -Xlint:unchecked for details.
23:40:1392 warnings
23:40:13Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_793809976.tmp
23:40:13Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
23:40:13:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:40:13:: delivering :: omero#OmeroJava-test;working@5ffef7c1fdfa :: 5.6.3-689-4798aa03c8-ice36-b116 :: integration :: Tue Oct 20 23:39:53 UTC 2026
23:40:13 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
23:40:13:: publishing :: omero#OmeroJava-test
23:40:13 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-689-4798aa03c8-ice36-b116.jar
23:40:14 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-689-4798aa03c8-ice36-b116.xml
23:40:1423:40:14build-eclipse:
23:40:14No sub-builds to iterate on
23:40:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
23:40:1423:40:14retrieve:
23:40:14:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
23:40:14:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
23:40:1923:40:19prepare:
23:40:19Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
23:40:2323:40:23release-clients:
23:40:23Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-689-4798aa03c8-ice36-b116.zip
23:40:3123:40:31release-zip:
23:40:31Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-689-4798aa03c8-ice36-b116.zip
23:40:4423:40:44BUILD SUCCESSFUL
23:40:44Total time: 4 minutes 52 seconds
23:40:44++ '[' -d .git ']'
23:40:44++ python3 ./build.py release-src
23:40:45Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
23:40:4623:40:46release-src-git:
23:40:46Releasing openmicroscopy-5.6.3-689-4798aa03c8-ice36-b116
23:40:48 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-689-4798aa03c8-ice36-b116.zip
23:40:48 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-689-4798aa03c8-ice36-b116-base.zip
23:40:4923:40:49BUILD SUCCESSFUL
23:40:49Total time: 4 seconds
23:40:49++ echo BUILD_NUMBER=116
23:40:49++ echo OMERO_BRANCH=merge_ci
23:40:49++ git_info
23:40:49+++ git rev-parse HEAD
23:40:49++ HEAD=4798aa03c8bdb38d18506a143519cd7ad125794e
23:40:49++ git log --max-count=1 4798aa03c8bdb38d18506a143519cd7ad125794e
23:40:49++ env
23:40:49++ sort
23:40:49Archiving artifacts
23:41:08Finished: SUCCESS
