14:16:50Started by upstream project "Trigger" build number 14914:16:50originally caused by:
14:16:50 Started by user devspace14:16:50Running as SYSTEM
14:16:50Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
14:16:50The recommended git tool is: NONE
14:16:50No credentials specified
14:16:50 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
14:16:50Fetching changes from the remote Git repository
14:16:50 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
14:16:50Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git14:16:50 > git --version # timeout=10
14:16:50 > git --version # 'git version 2.47.3'
14:16:50 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
14:16:51 > git rev-parse origin/merge_ci^{commit} # timeout=10
14:16:51Checking out Revision 57e825d68ab6f4bdb127147ee2afceba8dfb5b3d (origin/merge_ci)
14:16:51 > git config core.sparsecheckout # timeout=10
14:16:51 > git checkout -f 57e825d68ab6f4bdb127147ee2afceba8dfb5b3d # timeout=10
14:16:51Commit message: "Add version.properties to etc/omero.properties"
14:16:51 > git rev-list --no-walk 7b1f9e06f2661215a46a3634303acf2c40c72c57 # timeout=10
14:16:51Cleaning workspace
14:16:51 > git rev-parse --verify HEAD # timeout=10
14:16:51Resetting working tree
14:16:51 > git reset --hard # timeout=10
14:16:51 > git clean -fdx # timeout=10
14:16:51Copied 6 artifacts from "OMERO-python-superbuild-build" build number 11214:16:52[OMERO-build] $ /bin/bash -xe /tmp/jenkins2437871145873632704.sh
14:16:52+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
14:16:52+ cd src
14:16:52+ export OMERO_BRANCH=merge_ci
14:16:52+ OMERO_BRANCH=merge_ci
14:16:52+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
14:16:52+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
14:16:52+ source /home/omero/settings.env
14:16:52++ OMERO_DB_HOST=pg
14:16:52++ OMERO_DB_USER=postgres
14:16:52++ OMERO_DB_PASS=
14:16:52++ OMERO_ROOT_PASS=omero
14:16:52++ OMERO_DATA_DIR=/OMERO
14:16:52++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
14:16:52+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
14:16:55+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl14:16:56Collecting zeroc-ice==3.6.5
14:16:56 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
14:16:59 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 9.6 MB/s eta 0:00:00
14:16:59Installing collected packages: zeroc-ice
14:17:00Successfully installed zeroc-ice-3.6.5
14:17:0014:17:00[notice] A new release of pip available: 22.3.1 -> 26.0.1
14:17:00[notice] To update, run: python3.11 -m pip install --upgrade pip
14:17:00+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
14:17:00Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
14:17:01Collecting setuptools<66
14:17:01 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
14:17:01Collecting omero-py
14:17:01 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
14:17:01Collecting appdirs
14:17:01 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
14:17:01Collecting future
14:17:01 Using cached future-1.0.0-py3-none-any.whl (491 kB)
14:17:01Collecting numpy<3,>=2
14:17:01 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
14:17:02Collecting Pillow>=10.0.0
14:17:02 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
14:17:02Collecting PyYAML
14:17:02 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
14:17:02Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
14:17:02Collecting requests
14:17:02 Using cached requests-2.33.1-py3-none-any.whl (64 kB)
14:17:02Collecting portalocker
14:17:02 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
14:17:03Collecting charset_normalizer<4,>=2
14:17:03 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB)
14:17:03Collecting idna<4,>=2.5
14:17:03 Using cached idna-3.11-py3-none-any.whl (71 kB)
14:17:03Collecting urllib3<3,>=1.26
14:17:03 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
14:17:03Collecting certifi>=2023.5.7
14:17:03 Using cached certifi-2026.2.25-py3-none-any.whl (153 kB)
14:17:03Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
14:17:03 Attempting uninstall: setuptools
14:17:03 Found existing installation: setuptools 65.5.1
14:17:03 Uninstalling setuptools-65.5.1:
14:17:03 Successfully uninstalled setuptools-65.5.1
14:17:09Successfully installed Pillow-12.2.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.2.25 charset_normalizer-3.4.7 future-1.0.0 idna-3.11 numpy-2.4.4 omero-py-5.22.1 portalocker-3.2.0 requests-2.33.1 setuptools-65.7.0 urllib3-2.6.3
14:17:0914:17:09[notice] A new release of pip available: 22.3.1 -> 26.0.1
14:17:09[notice] To update, run: python3.11 -m pip install --upgrade pip
14:17:09+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
14:17:09++ deactivate nondestructive
14:17:09++ '[' -n '' ']'
14:17:09++ '[' -n '' ']'
14:17:09++ hash -r
14:17:09++ '[' -n '' ']'
14:17:09++ unset VIRTUAL_ENV
14:17:09++ unset VIRTUAL_ENV_PROMPT
14:17:09++ '[' '!' nondestructive = nondestructive ']'
14:17:09++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
14:17:09++ export VIRTUAL_ENV
14:17:09++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:17:09++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
14:17:09++ export PATH
14:17:09++ '[' -n '' ']'
14:17:09++ '[' -z '' ']'
14:17:09++ _OLD_VIRTUAL_PS1=
14:17:09++ PS1='(omero-virtualenv) '
14:17:09++ export PS1
14:17:09++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
14:17:09++ export VIRTUAL_ENV_PROMPT
14:17:09++ hash -r
14:17:09+ source docs/hudson/OMERO.sh
14:17:09++ set -e
14:17:09++ set -u
14:17:09++ set -x
14:17:09++ source docs/hudson/functions.sh
14:17:09++ echo Building merge_ci
14:17:09Building merge_ci
14:17:09++ python3 ./build.py build-dev release-all
14:17:09Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
14:17:1014:17:10check-ivy:
14:17:10Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
14:17:10Created dir: /home/omero/workspace/OMERO-build/src/target
14:17:10:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:17:10:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:17:1114:17:11build-scons:
14:17:11Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
14:17:11No sub-builds to iterate on
14:17:11Entering /home/omero/workspace/OMERO-build/src/components/tools...
14:17:1114:17:11buildlist:
14:17:11:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:17:11:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:17:1114:17:11clean:
14:17:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:17:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:17:1114:17:11python-clean:
14:17:11WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:17:11/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-57e825d68a-ice36-b116') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:17:11 warnings.warn(
14:17:11running clean
14:17:11Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
14:17:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
14:17:1214:17:12python-clean:
14:17:12WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:17:12/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-57e825d68a-ice36-b116') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:17:12 warnings.warn(
14:17:12running clean
14:17:12Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
14:17:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:17:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:17:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:17:1214:17:12python-clean:
14:17:12WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:17:12/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-594-57e825d68a-ice36-b116') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:17:12 warnings.warn(
14:17:12running clean
14:17:12Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
14:17:12Deleting directory /home/omero/workspace/OMERO-build/src/target
14:17:1214:17:12build-scons:
14:17:12Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
14:17:1214:17:12build:
14:17:12No sub-builds to iterate on
14:17:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:17:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:17:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
14:17:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:17:1314:17:13tools-init:
14:17:13no-op
14:17:1314:17:13retrieve:
14:17:13:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:17:13:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:17:4814:17:48prepare:
14:17:48Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
14:17:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
14:17:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
14:17:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:17:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:17:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
14:17:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
14:17:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:17:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:17:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:17:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:17:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:17:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:17:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:17:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:17:4814:17:48pre-compile:
14:17:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:17:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:17:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:17:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:17:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:17:4814:17:48compile:
14:17:48no-op
14:17:4814:17:48package:
14:17:48Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
14:17:4814:17:48install:
14:17:48:: delivering :: omero#omero_client;working@012a2a74efc3 :: 5.6.3-594-57e825d68a-ice36-b116 :: integration :: Wed Apr 15 14:17:12 UTC 2026
14:17:48 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
14:17:48:: publishing :: omero#omero_client
14:17:48 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-57e825d68a-ice36-b116/omero_client-5.6.3-594-57e825d68a-ice36-b116.jar
14:17:48 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-594-57e825d68a-ice36-b116/omero_client-5.6.3-594-57e825d68a-ice36-b116.xml
14:17:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:17:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:17:4914:17:49retrieve:
14:17:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:17:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:17:49Entering /home/omero/workspace/OMERO-build/src/components/tools...
14:17:4914:17:49dist:
14:17:49Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
14:17:49Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
14:17:49Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
14:17:49Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
14:17:49Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
14:17:49Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
14:17:49Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
14:17:49Entering /home/omero/workspace/OMERO-build/src/components/tests...
14:17:49Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
14:17:4914:17:49copy-licenses:
14:17:49Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
14:17:49Created dir: /home/omero/workspace/OMERO-build/src/dist/share
14:17:49Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
14:17:4914:17:49copy-history:
14:17:49Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
14:17:4914:17:49copy-etc:
14:17:49Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
14:17:49Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
14:17:4914:17:49copy-sql:
14:17:49Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
14:17:5314:17:53copy-server:
14:17:53 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
14:17:5314:17:53copy-client:
14:17:53Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
14:17:54 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
14:17:5414:17:54update-version:
14:17:54Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
14:17:5414:17:54create-workdirs:
14:17:54Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
14:17:54Created dir: /home/omero/workspace/OMERO-build/src/dist/var
14:17:54Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
14:17:5414:17:54copy-luts:
14:17:54Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
14:17:54Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
14:17:5414:17:54test-compile:
14:17:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:17:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
14:17:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:17:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:17:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:17:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:17:55Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
14:17:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:17:5514:17:55testng-init:
14:17:55:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:17:55:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:17:5714:17:57,619 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
14:17:5714:17:57,621 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - No custom configurators were discovered as a service.
14:17:5714:17:57,621 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
14:17:5714:17:57,624 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
14:17:5714:17:57,624 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
14:17:5714:17:57,625 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
14:17:5714:17:57,625 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
14:17:5714:17:57,625 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
14:17:5714:17:57,627 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
14:17:5714:17:57,627 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
14:17:5714:17:57,627 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
14:17:5714:17:57,628 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1818c0a0 - Resource [logback.xml] occurs multiple times on the classpath.
14:17:5714:17:57,628 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1818c0a0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
14:17:5714:17:57,628 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1818c0a0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
14:17:5714:17:57,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
14:17:5714:17:57,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
14:17:5714:17:57,850 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
14:17:5714:17:57,851 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@646a5e76 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
14:17:5714:17:57,851 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@646a5e76 - Please move "immediateFlush" property into the enclosing appender.
14:17:5714:17:57,905 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@646a5e76 - Setting the "immediateFlush" property of the enclosing appender to true
14:17:5714:17:57,905 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
14:17:5714:17:57,905 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
14:17:5714:17:57,905 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
14:17:5714:17:57,905 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
14:17:5714:17:57,905 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
14:17:5714:17:57,906 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
14:17:5714:17:57,907 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2656db92 - End of configuration.
14:17:5714:17:57,908 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@58649b7e - Registering current configuration as safe fallback point
14:17:5714:17:57,908 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3109f8ae - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 281 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
14:17:5714:17:57lifecycle.test-compile:
14:17:57Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
14:17:57Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
14:17:58warning: [options] bootstrap class path not set in conjunction with -source 8
14:17:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:17:59import omero.grid.RawAccessRequest;
14:17:59 ^
14:17:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:17:59import omero.grid.RawAccessRequest;
14:17:59 ^
14:17:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:17:59import omero.grid.RawAccessRequest;
14:17:59 ^
14:17:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
14:17:59import omero.model.ImportJob;
14:17:59 ^
14:17:59/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
14:17:59import omero.model.ImportJobI;
14:17:59 ^
14:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
14:18:00 IObject link = (IObject) linkClass.newInstance();
14:18:00 ^
14:18:00 where T is a type-variable:
14:18:00 T extends Object declared in class Class
14:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
14:18:00 T copy = (T) obj.getClass().newInstance();
14:18:00 ^
14:18:00 where T is a type-variable:
14:18:00 T extends Object declared in class Class
14:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:18:00 RawAccessRequest raw = new RawAccessRequest();
14:18:00 ^
14:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:18:00 RawAccessRequest raw = new RawAccessRequest();
14:18:00 ^
14:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
14:18:00 raw.repoUuid = legacy.root().getHash().getValue();
14:18:00 ^
14:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
14:18:00 raw.command = "rm";
14:18:00 ^
14:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
14:18:00 raw.args = Arrays.asList(path);
14:18:00 ^
14:18:00/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
14:18:00 final IObject link = linkClass.newInstance();
14:18:00 ^
14:18:00 where T is a type-variable:
14:18:00 T extends Object declared in class Class
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
14:18:01 originalLink.setChild(annotationClass.newInstance());
14:18:01 ^
14:18:01 where T is a type-variable:
14:18:01 T extends Object declared in class Class
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
14:18:01 RoiResult r = svc.findByImage(id, new RoiOptions());
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:18:01 final RawAccessRequest request = new RawAccessRequest();
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:18:01 final RawAccessRequest request = new RawAccessRequest();
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
14:18:01 request.repoUuid = repo.root().getHash().getValue();
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
14:18:01 request.command = "exists";
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
14:18:01 request.args = Collections.singletonList(dirPath);
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:18:01 final RawAccessRequest request = new RawAccessRequest();
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:18:01 final RawAccessRequest request = new RawAccessRequest();
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
14:18:01 request.repoUuid = repo.root().getHash().getValue();
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
14:18:01 request.command = "exists";
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
14:18:01 request.args = Collections.singletonList(dirName);
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
14:18:01 final ImportJob importJob = new ImportJobI();
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
14:18:01 final ImportJob importJob = new ImportJobI();
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
14:18:01 importJob.setImageName(omero.rtypes.rstring(name));
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
14:18:01 importJob.setImageDescription(omero.rtypes.rstring(desc));
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
14:18:01 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
14:18:01 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
14:18:01 final String savedName = sent.getImageName().getValue().toString();
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
14:18:01 final String savedDesc = sent.getImageDescription().getValue().toString();
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
14:18:01 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
14:18:01 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
14:18:01 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
14:18:01 ^
14:18:01/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
14:18:01 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
14:18:01 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
14:18:02 RoiResult r = svc.findByImage(image.getId().getValue(),
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:18:02 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:18:02 l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:18:02 l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:18:02 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
14:18:02 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:18:02 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
14:18:02 table = svc.getTable(f.getId().getValue());
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
14:18:02 RoiResult r = svc.findByImage(image.getId().getValue(),
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
14:18:02 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
14:18:02 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
14:18:02 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
14:18:02 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:18:02 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:18:02 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:18:02 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:18:02 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
14:18:02 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:18:02 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:18:02 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:18:02 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:18:02 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:18:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:18:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:18:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:18:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:18:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:18:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:18:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
14:18:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
14:18:02 svc.getShapeStatsRestricted(
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
14:18:02 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:18:02 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:18:02 request.typesToIgnore = Collections.singletonList("TagAnnotation");
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:18:02 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:18:02 request.typesToIgnore = Collections.singletonList("Annotation");
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:18:02 request.typesToIgnore = Collections.singletonList("Annotation");
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:18:02 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:18:02 p2.setRelatedTo(p1);
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:18:02 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:18:02 pixels1.setRelatedTo(pixels2);
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:18:02 Pixels pixels = pixels1.getRelatedTo();
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:18:02 Assert.assertNull(pixels1.getRelatedTo());
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:18:02 pixels1.setRelatedTo(pixels2);
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:18:02 Pixels pixels = pixels1.getRelatedTo();
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:18:02 Assert.assertNull(pixels1.getRelatedTo());
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:18:02 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:18:02 l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:18:02 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:18:02 ^
14:18:02/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:18:02 l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:18:02 ^
14:18:02Note: Some input files use unchecked or unsafe operations.
14:18:02Note: Recompile with -Xlint:unchecked for details.
14:18:0288 warnings
14:18:02Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_543178719.tmp
14:18:02Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
14:18:03:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:18:03:: delivering :: omero#OmeroJava-test;working@012a2a74efc3 :: 5.6.3-594-57e825d68a-ice36-b116 :: integration :: Wed Apr 15 14:17:55 UTC 2026
14:18:03 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
14:18:03:: publishing :: omero#OmeroJava-test
14:18:03 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-57e825d68a-ice36-b116.jar
14:18:03 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-594-57e825d68a-ice36-b116.xml
14:18:0314:18:03build-eclipse:
14:18:03No sub-builds to iterate on
14:18:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:18:0314:18:03retrieve:
14:18:03:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:18:03:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:18:0514:18:05prepare:
14:18:05Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
14:18:0614:18:06release-clients:
14:18:06Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-594-57e825d68a-ice36-b116.zip
14:18:1114:18:11release-zip:
14:18:11Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-594-57e825d68a-ice36-b116.zip
14:18:2114:18:21BUILD SUCCESSFUL
14:18:21Total time: 1 minute 11 seconds
14:18:21++ '[' -d .git ']'
14:18:21++ python3 ./build.py release-src
14:18:21Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
14:18:2114:18:21release-src-git:
14:18:21Releasing openmicroscopy-5.6.3-594-57e825d68a-ice36-b116
14:18:23 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-57e825d68a-ice36-b116.zip
14:18:23 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-594-57e825d68a-ice36-b116-base.zip
14:18:2414:18:24BUILD SUCCESSFUL
14:18:24Total time: 3 seconds
14:18:24++ echo BUILD_NUMBER=116
14:18:24++ echo OMERO_BRANCH=merge_ci
14:18:24++ git_info
14:18:24+++ git rev-parse HEAD
14:18:24++ HEAD=57e825d68ab6f4bdb127147ee2afceba8dfb5b3d
14:18:24++ git log --max-count=1 57e825d68ab6f4bdb127147ee2afceba8dfb5b3d
14:18:24++ env
14:18:24++ sort
14:18:24Archiving artifacts
14:18:41Finished: SUCCESS
