00:39:24Started by upstream project "Trigger" build number 14100:39:24originally caused by:
00:39:24 Started by timer
00:39:24Running as SYSTEM
00:39:24Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:39:24The recommended git tool is: NONE
00:39:24No credentials specified
00:39:24 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:39:24Fetching changes from the remote Git repository
00:39:24 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:39:24Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:39:24 > git --version # timeout=10
00:39:24 > git --version # 'git version 2.39.3'
00:39:24 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:39:28 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:39:28Checking out Revision ed1f129fbefb7dc6542d673dcef192e7b433a9ca (origin/merge_ci)
00:39:28 > git config core.sparsecheckout # timeout=10
00:39:28 > git checkout -f ed1f129fbefb7dc6542d673dcef192e7b433a9ca # timeout=10
00:39:28Commit message: "Add version.properties to etc/omero.properties"
00:39:28 > git rev-list --no-walk 672b733b5f2b172a922aba247e95122b7b48847b # timeout=10
00:39:28Cleaning workspace
00:39:28 > git rev-parse --verify HEAD # timeout=10
00:39:28Resetting working tree
00:39:28 > git reset --hard # timeout=10
00:39:28 > git clean -fdx # timeout=10
00:39:29Copied 6 artifacts from "OMERO-python-superbuild-build" build number 11900:39:29[OMERO-build] $ /bin/bash -xe /tmp/jenkins13083135617158152605.sh
00:39:29+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
00:39:29+ cd src
00:39:29+ export OMERO_BRANCH=merge_ci
00:39:29+ OMERO_BRANCH=merge_ci
00:39:29+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:39:29+ source /home/omero/settings.env
00:39:29++ OMERO_DB_HOST=pg
00:39:29++ OMERO_DB_USER=postgres
00:39:29++ OMERO_DB_PASS=
00:39:29++ OMERO_ROOT_PASS=omero
00:39:29++ OMERO_DATA_DIR=/OMERO
00:39:29++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:39:29+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:39:32+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl00:39:34Collecting zeroc-ice==3.6.5
00:39:35 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
00:39:37WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available.
00:39:37You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:39:37+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
00:39:37Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (70.3.0)
00:39:38Collecting setuptools
00:39:38 Using cached setuptools-71.0.0-py3-none-any.whl (908 kB)
00:39:38Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.3)
00:39:38Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
00:39:38Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
00:39:38Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
00:39:38Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
00:39:38Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
00:39:38Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
00:39:38Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
00:39:38Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
00:39:38Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
00:39:38Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
00:39:38Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
00:39:38Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
00:39:38Installing collected packages: setuptools
00:39:38 Attempting uninstall: setuptools
00:39:38 Found existing installation: setuptools 70.3.0
00:39:38 Uninstalling setuptools-70.3.0:
00:39:38 Successfully uninstalled setuptools-70.3.0
00:39:39Successfully installed setuptools-71.0.0
00:39:39WARNING: You are using pip version 21.2.3; however, version 24.1.2 is available.
00:39:39You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:39:39+ source docs/hudson/OMERO.sh
00:39:39++ set -e
00:39:39++ set -u
00:39:39++ set -x
00:39:39++ source docs/hudson/functions.sh
00:39:39++ echo Building merge_ci
00:39:39Building merge_ci
00:39:39++ python3 ./build.py build-dev release-all
00:39:39OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:39:40Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:39:4000:39:40check-ivy:
00:39:40Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:39:40Created dir: /home/omero/workspace/OMERO-build/src/target
00:39:41:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:39:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:4200:39:42build-scons:
00:39:42Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:39:42No sub-builds to iterate on
00:39:42Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:39:4200:39:42buildlist:
00:39:42:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:39:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:4300:39:43clean:
00:39:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:4300:39:43python-clean:
00:39:43WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:43/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-481-ed1f129fbe-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:43 warnings.warn(
00:39:43running clean
00:39:43Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:39:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:4300:39:43python-clean:
00:39:43WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:43/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-481-ed1f129fbe-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:43 warnings.warn(
00:39:43running clean
00:39:43Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:39:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:4400:39:44python-clean:
00:39:44WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:44/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-481-ed1f129fbe-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:44 warnings.warn(
00:39:44running clean
00:39:44Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:39:44Deleting directory /home/omero/workspace/OMERO-build/src/target
00:39:4400:39:44build-scons:
00:39:44Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:39:4400:39:44build:
00:39:44No sub-builds to iterate on
00:39:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:4400:39:44tools-init:
00:39:44no-op
00:39:4400:39:44retrieve:
00:39:44:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:39:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:0100:40:01prepare:
00:40:01Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:40:01Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:40:01Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:40:01Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:01Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:01Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:01Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:40:01Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:01Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:01Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:01Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:01Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:01Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:01Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:01Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:0100:40:01pre-compile:
00:40:01Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:01Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:01Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:01Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:01Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:0100:40:01compile:
00:40:01no-op
00:40:0100:40:01package:
00:40:01Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:40:0200:40:02install:
00:40:02:: delivering :: omero#omero_client;working@121c5c9aa309 :: 5.6.3-481-ed1f129fbe-ice36 :: integration :: Thu Jul 18 00:39:44 UTC 2024
00:40:02 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:40:02:: publishing :: omero#omero_client
00:40:02 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-481-ed1f129fbe-ice36/omero_client-5.6.3-481-ed1f129fbe-ice36.jar
00:40:02 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-481-ed1f129fbe-ice36/omero_client-5.6.3-481-ed1f129fbe-ice36.xml
00:40:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:0200:40:02retrieve:
00:40:02:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:03Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:40:0300:40:03dist:
00:40:03Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:40:03Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:40:03Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:40:03Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:40:03Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:40:03Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
00:40:03Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:40:03Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:40:03Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:40:0300:40:03copy-licenses:
00:40:03Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:40:03Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:40:03Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:40:0400:40:04copy-history:
00:40:04Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:40:0400:40:04copy-etc:
00:40:04Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:40:04Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:40:0400:40:04copy-sql:
00:40:04Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:40:1400:40:14copy-server:
00:40:14 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:40:1400:40:14copy-client:
00:40:14Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:40:16 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:40:1600:40:16update-version:
00:40:16Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:40:1600:40:16create-workdirs:
00:40:16Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:40:16Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:40:1600:40:16copy-luts:
00:40:16Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:40:16Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:40:1700:40:17test-compile:
00:40:17:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:17Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:40:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:1700:40:17testng-init:
00:40:17:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:17:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:2100:40:20,905 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
00:40:2100:40:20,909 |-INFO in ch.qos.logback.classic.util.ContextInitializer@195f4a3e - No custom configurators were discovered as a service.
00:40:2100:40:20,909 |-INFO in ch.qos.logback.classic.util.ContextInitializer@195f4a3e - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:40:2100:40:20,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@195f4a3e - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:40:2100:40:20,913 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:40:2100:40:20,913 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:40:2100:40:20,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@195f4a3e - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:40:2100:40:20,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@195f4a3e - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:40:2100:40:20,916 |-INFO in ch.qos.logback.classic.util.ContextInitializer@195f4a3e - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:40:2100:40:20,917 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:40:2100:40:20,917 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:40:2100:40:20,918 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@31962524 - Resource [logback.xml] occurs multiple times on the classpath.
00:40:2100:40:20,918 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@31962524 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:40:2100:40:20,918 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@31962524 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:40:2100:40:21,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:40:2100:40:21,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:40:2100:40:21,184 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:40:2100:40:21,187 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@bf562b3 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:40:2100:40:21,187 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@bf562b3 - Please move "immediateFlush" property into the enclosing appender.
00:40:2100:40:21,257 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@bf562b3 - Setting the "immediateFlush" property of the enclosing appender to true
00:40:2100:40:21,258 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:40:2100:40:21,258 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:40:2100:40:21,258 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:40:2100:40:21,258 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:40:2100:40:21,258 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:40:2100:40:21,258 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:40:2100:40:21,259 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6a18bbeb - End of configuration.
00:40:2100:40:21,262 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@9f5022c - Registering current configuration as safe fallback point
00:40:2100:40:21,262 |-INFO in ch.qos.logback.classic.util.ContextInitializer@195f4a3e - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 346 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:40:2100:40:21lifecycle.test-compile:
00:40:21Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:21Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:21warning: [options] bootstrap class path not set in conjunction with -source 8
00:40:24/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:24import omero.grid.RawAccessRequest;
00:40:24 ^
00:40:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:25import omero.grid.RawAccessRequest;
00:40:25 ^
00:40:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:25import omero.grid.RawAccessRequest;
00:40:25 ^
00:40:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:25import omero.model.ImportJob;
00:40:25 ^
00:40:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:40:25import omero.model.ImportJobI;
00:40:25 ^
00:40:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:40:26 IObject link = (IObject) linkClass.newInstance();
00:40:26 ^
00:40:26 where T is a type-variable:
00:40:26 T extends Object declared in class Class
00:40:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:40:26 T copy = (T) obj.getClass().newInstance();
00:40:26 ^
00:40:26 where T is a type-variable:
00:40:26 T extends Object declared in class Class
00:40:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:26 RawAccessRequest raw = new RawAccessRequest();
00:40:26 ^
00:40:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:26 RawAccessRequest raw = new RawAccessRequest();
00:40:26 ^
00:40:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:26 raw.repoUuid = legacy.root().getHash().getValue();
00:40:26 ^
00:40:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:26 raw.command = "rm";
00:40:26 ^
00:40:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:26 raw.args = Arrays.asList(path);
00:40:26 ^
00:40:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:40:26 final IObject link = linkClass.newInstance();
00:40:26 ^
00:40:26 where T is a type-variable:
00:40:26 T extends Object declared in class Class
00:40:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:40:26 originalLink.setChild(annotationClass.newInstance());
00:40:26 ^
00:40:26 where T is a type-variable:
00:40:26 T extends Object declared in class Class
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:27 RoiResult r = svc.findByImage(id, new RoiOptions());
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:27 final RawAccessRequest request = new RawAccessRequest();
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:27 final RawAccessRequest request = new RawAccessRequest();
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:27 request.repoUuid = repo.root().getHash().getValue();
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:27 request.command = "exists";
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:27 request.args = Collections.singletonList(dirPath);
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:27 final RawAccessRequest request = new RawAccessRequest();
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:27 final RawAccessRequest request = new RawAccessRequest();
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:27 request.repoUuid = repo.root().getHash().getValue();
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:27 request.command = "exists";
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:27 request.args = Collections.singletonList(dirName);
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:27 final ImportJob importJob = new ImportJobI();
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:40:27 final ImportJob importJob = new ImportJobI();
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:40:27 importJob.setImageName(omero.rtypes.rstring(name));
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:40:27 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:27 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:27 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:40:27 final String savedName = sent.getImageName().getValue().toString();
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:40:27 final String savedDesc = sent.getImageDescription().getValue().toString();
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:27 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:27 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:40:27 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:40:27 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:40:27 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:28 RoiResult r = svc.findByImage(image.getId().getValue(),
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:28 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:28 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:28 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:28 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:40:28 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:28 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:40:28 table = svc.getTable(f.getId().getValue());
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:28 RoiResult r = svc.findByImage(image.getId().getValue(),
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:40:28 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:40:28 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:40:28 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:40:28 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:28 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:28 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:28 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:28 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:40:28 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:28 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:28 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:28 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:28 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:40:28 svc.getShapeStatsRestricted(
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:40:28 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:28 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:28 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:28 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:28 request.typesToIgnore = Collections.singletonList("Annotation");
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:28 request.typesToIgnore = Collections.singletonList("Annotation");
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:28 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:28 p2.setRelatedTo(p1);
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:28 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:28 pixels1.setRelatedTo(pixels2);
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:28 Pixels pixels = pixels1.getRelatedTo();
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:28 Assert.assertNull(pixels1.getRelatedTo());
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:28 pixels1.setRelatedTo(pixels2);
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:28 Pixels pixels = pixels1.getRelatedTo();
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:28 Assert.assertNull(pixels1.getRelatedTo());
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:28 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:28 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:28 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:28 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:28 ^
00:40:28Note: Some input files use unchecked or unsafe operations.
00:40:28Note: Recompile with -Xlint:unchecked for details.
00:40:2888 warnings
00:40:28Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2034954690.tmp
00:40:28Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:40:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:29:: delivering :: omero#OmeroJava-test;working@121c5c9aa309 :: 5.6.3-481-ed1f129fbe-ice36 :: integration :: Thu Jul 18 00:40:17 UTC 2024
00:40:29 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:40:29:: publishing :: omero#OmeroJava-test
00:40:29 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-481-ed1f129fbe-ice36.jar
00:40:29 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-481-ed1f129fbe-ice36.xml
00:40:2900:40:29build-eclipse:
00:40:29No sub-builds to iterate on
00:40:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:2900:40:29retrieve:
00:40:29:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:3200:40:32prepare:
00:40:32Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:40:3400:40:34release-clients:
00:40:34Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-481-ed1f129fbe-ice36.zip
00:40:4000:40:40release-zip:
00:40:40Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-481-ed1f129fbe-ice36.zip
00:40:5300:40:53BUILD SUCCESSFUL
00:40:53Total time: 1 minute 13 seconds
00:40:53++ '[' -d .git ']'
00:40:53++ python3 ./build.py release-src
00:40:53OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:40:53Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:40:5300:40:53release-src-git:
00:40:53Releasing openmicroscopy-5.6.3-481-ed1f129fbe-ice36
00:40:55 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-481-ed1f129fbe-ice36.zip
00:40:55 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-481-ed1f129fbe-ice36-base.zip
00:40:5700:40:57BUILD SUCCESSFUL
00:40:57Total time: 3 seconds
00:40:57++ echo BUILD_NUMBER=120
00:40:57++ echo OMERO_BRANCH=merge_ci
00:40:57++ git_info
00:40:57+++ git rev-parse HEAD
00:40:57++ HEAD=ed1f129fbefb7dc6542d673dcef192e7b433a9ca
00:40:57++ git log --max-count=1 ed1f129fbefb7dc6542d673dcef192e7b433a9ca
00:40:57++ env
00:40:57++ sort
00:40:57Archiving artifacts
00:41:28Finished: SUCCESS
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