08:35:44Started by upstream project "Trigger" build number 16408:35:44originally caused by:
08:35:44 Started by user devspace08:35:44Running as SYSTEM
08:35:44Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
08:35:44The recommended git tool is: NONE
08:35:44No credentials specified
08:35:44 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
08:35:44Fetching changes from the remote Git repository
08:35:44 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
08:35:44Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git08:35:44 > git --version # timeout=10
08:35:44 > git --version # 'git version 2.39.3'
08:35:44 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
08:35:49 > git rev-parse origin/merge_ci^{commit} # timeout=10
08:35:49Checking out Revision 3796cdad32268c87a1d382efcf5daf3d57179627 (origin/merge_ci)
08:35:49 > git config core.sparsecheckout # timeout=10
08:35:49 > git checkout -f 3796cdad32268c87a1d382efcf5daf3d57179627 # timeout=10
08:35:49Commit message: "Add version.properties to etc/omero.properties"
08:35:49 > git rev-list --no-walk 3ad73e8c88c7c828a197c725eb97d0f8eb5120a9 # timeout=10
08:35:49Cleaning workspace
08:35:49 > git rev-parse --verify HEAD # timeout=10
08:35:49Resetting working tree
08:35:49 > git reset --hard # timeout=10
08:35:49 > git clean -fdx # timeout=10
08:35:49Copied 6 artifacts from "OMERO-python-superbuild-build" build number 13508:35:49[OMERO-build] $ /bin/bash -xe /tmp/jenkins12043998071450166131.sh
08:35:49+ mv omero-scripts/dist/omero_scripts-5.8.4.dev0.tar.gz .
08:35:49+ cd src
08:35:49+ export OMERO_BRANCH=merge_ci
08:35:49+ OMERO_BRANCH=merge_ci
08:35:49+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
08:35:49+ source /home/omero/settings.env
08:35:49++ OMERO_DB_HOST=pg
08:35:49++ OMERO_DB_USER=postgres
08:35:49++ OMERO_DB_PASS=
08:35:49++ OMERO_ROOT_PASS=omero
08:35:49++ OMERO_DATA_DIR=/OMERO
08:35:49++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
08:35:49+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
08:35:53+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl08:35:55Collecting zeroc-ice==3.6.5
08:35:56 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
08:35:58WARNING: You are using pip version 21.2.3; however, version 24.2 is available.
08:35:58You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
08:35:58+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
08:35:58Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (72.1.0)
08:35:59Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.4)
08:35:59Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
08:35:59Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
08:35:59Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
08:35:59Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
08:35:59Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
08:35:59Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
08:35:59Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
08:35:59Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
08:35:59Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
08:35:59Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
08:35:59Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
08:35:59Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
08:35:59WARNING: You are using pip version 21.2.3; however, version 24.2 is available.
08:35:59You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
08:35:59+ source docs/hudson/OMERO.sh
08:35:59++ set -e
08:35:59++ set -u
08:35:59++ set -x
08:35:59++ source docs/hudson/functions.sh
08:35:59++ echo Building merge_ci
08:35:59Building merge_ci
08:35:59++ python3 ./build.py build-dev release-all
08:35:59OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
08:36:00Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:36:0108:36:01check-ivy:
08:36:01Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
08:36:01Created dir: /home/omero/workspace/OMERO-build/src/target
08:36:02:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:36:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:36:0308:36:03build-scons:
08:36:03Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:36:03No sub-builds to iterate on
08:36:04Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:36:0408:36:04buildlist:
08:36:04:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:36:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:36:0408:36:04clean:
08:36:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:36:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:36:0408:36:04python-clean:
08:36:04WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:36:04/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-494-3796cdad32-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:36:04 warnings.warn(
08:36:04running clean
08:36:04Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
08:36:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:36:0508:36:05python-clean:
08:36:05WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:36:05/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-494-3796cdad32-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:36:05 warnings.warn(
08:36:05running clean
08:36:05Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
08:36:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:36:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:36:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:36:0508:36:05python-clean:
08:36:05WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:36:05/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-494-3796cdad32-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:36:05 warnings.warn(
08:36:05running clean
08:36:05Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
08:36:05Deleting directory /home/omero/workspace/OMERO-build/src/target
08:36:0508:36:05build-scons:
08:36:05Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:36:0508:36:05build:
08:36:05No sub-builds to iterate on
08:36:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:36:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:36:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:36:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:36:0508:36:05tools-init:
08:36:05no-op
08:36:0608:36:06retrieve:
08:36:06:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:36:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:36:4408:36:44prepare:
08:36:44Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:36:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
08:36:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
08:36:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:36:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:36:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:36:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
08:36:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:36:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:36:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:36:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:36:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:36:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:36:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:36:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:36:4408:36:44pre-compile:
08:36:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:36:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:36:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:36:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:36:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:36:4408:36:44compile:
08:36:44no-op
08:36:4408:36:44package:
08:36:44Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
08:36:4508:36:45install:
08:36:45:: delivering :: omero#omero_client;working@121c5c9aa309 :: 5.6.3-494-3796cdad32-ice36 :: integration :: Mon Aug 05 08:36:05 UTC 2024
08:36:45 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
08:36:45:: publishing :: omero#omero_client
08:36:45 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-494-3796cdad32-ice36/omero_client-5.6.3-494-3796cdad32-ice36.jar
08:36:45 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-494-3796cdad32-ice36/omero_client-5.6.3-494-3796cdad32-ice36.xml
08:36:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:36:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:36:4508:36:45retrieve:
08:36:45:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:36:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:36:45Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:36:4508:36:45dist:
08:36:45Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
08:36:45Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
08:36:45Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:36:45Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:36:45Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
08:36:45Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
08:36:45Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
08:36:45Entering /home/omero/workspace/OMERO-build/src/components/tests...
08:36:45Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:36:4608:36:46copy-licenses:
08:36:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:36:46Created dir: /home/omero/workspace/OMERO-build/src/dist/share
08:36:46Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
08:36:4608:36:46copy-history:
08:36:46Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:36:4608:36:46copy-etc:
08:36:46Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
08:36:47Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
08:36:4708:36:47copy-sql:
08:36:47Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
08:36:5908:36:59copy-server:
08:36:59 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
08:37:0008:37:00copy-client:
08:37:00Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
08:37:01 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
08:37:0108:37:01update-version:
08:37:01Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
08:37:0108:37:01create-workdirs:
08:37:01Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
08:37:01Created dir: /home/omero/workspace/OMERO-build/src/dist/var
08:37:0108:37:01copy-luts:
08:37:01Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:37:01Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:37:0208:37:02test-compile:
08:37:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:37:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:37:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:37:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:37:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:37:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:37:02Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:37:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:37:0208:37:02testng-init:
08:37:02:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:37:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:37:0608:37:05,774 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
08:37:0608:37:05,777 |-INFO in ch.qos.logback.classic.util.ContextInitializer@bf562b3 - No custom configurators were discovered as a service.
08:37:0608:37:05,777 |-INFO in ch.qos.logback.classic.util.ContextInitializer@bf562b3 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
08:37:0608:37:05,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@bf562b3 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
08:37:0608:37:05,781 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
08:37:0608:37:05,781 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
08:37:0608:37:05,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@bf562b3 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
08:37:0608:37:05,782 |-INFO in ch.qos.logback.classic.util.ContextInitializer@bf562b3 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
08:37:0608:37:05,783 |-INFO in ch.qos.logback.classic.util.ContextInitializer@bf562b3 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
08:37:0608:37:05,784 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
08:37:0608:37:05,784 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:37:0608:37:05,785 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6a18bbeb - Resource [logback.xml] occurs multiple times on the classpath.
08:37:0608:37:05,785 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6a18bbeb - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:37:0608:37:05,785 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6a18bbeb - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
08:37:0608:37:05,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
08:37:0608:37:05,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
08:37:0608:37:06,014 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
08:37:0608:37:06,016 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9f5022c - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
08:37:0608:37:06,016 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9f5022c - Please move "immediateFlush" property into the enclosing appender.
08:37:0608:37:06,084 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@9f5022c - Setting the "immediateFlush" property of the enclosing appender to true
08:37:0608:37:06,085 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
08:37:0608:37:06,085 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
08:37:0608:37:06,085 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
08:37:0608:37:06,086 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
08:37:0608:37:06,086 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
08:37:0608:37:06,086 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
08:37:0608:37:06,087 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@9caa933 - End of configuration.
08:37:0608:37:06,089 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@290ab243 - Registering current configuration as safe fallback point
08:37:0608:37:06,089 |-INFO in ch.qos.logback.classic.util.ContextInitializer@bf562b3 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 306 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
08:37:0608:37:06lifecycle.test-compile:
08:37:06Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:37:06Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:37:06warning: [options] bootstrap class path not set in conjunction with -source 8
08:37:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:37:09import omero.grid.RawAccessRequest;
08:37:09 ^
08:37:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:37:09import omero.grid.RawAccessRequest;
08:37:09 ^
08:37:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:37:09import omero.grid.RawAccessRequest;
08:37:09 ^
08:37:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
08:37:10import omero.model.ImportJob;
08:37:10 ^
08:37:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:37:10import omero.model.ImportJobI;
08:37:10 ^
08:37:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
08:37:10 IObject link = (IObject) linkClass.newInstance();
08:37:10 ^
08:37:10 where T is a type-variable:
08:37:10 T extends Object declared in class Class
08:37:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
08:37:11 T copy = (T) obj.getClass().newInstance();
08:37:11 ^
08:37:11 where T is a type-variable:
08:37:11 T extends Object declared in class Class
08:37:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:37:11 RawAccessRequest raw = new RawAccessRequest();
08:37:11 ^
08:37:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:37:11 RawAccessRequest raw = new RawAccessRequest();
08:37:11 ^
08:37:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:37:11 raw.repoUuid = legacy.root().getHash().getValue();
08:37:11 ^
08:37:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
08:37:11 raw.command = "rm";
08:37:11 ^
08:37:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
08:37:11 raw.args = Arrays.asList(path);
08:37:11 ^
08:37:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
08:37:11 final IObject link = linkClass.newInstance();
08:37:11 ^
08:37:11 where T is a type-variable:
08:37:11 T extends Object declared in class Class
08:37:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
08:37:11 originalLink.setChild(annotationClass.newInstance());
08:37:11 ^
08:37:11 where T is a type-variable:
08:37:11 T extends Object declared in class Class
08:37:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:37:11 RoiResult r = svc.findByImage(id, new RoiOptions());
08:37:11 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:37:12 final RawAccessRequest request = new RawAccessRequest();
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:37:12 final RawAccessRequest request = new RawAccessRequest();
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:37:12 request.repoUuid = repo.root().getHash().getValue();
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
08:37:12 request.command = "exists";
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
08:37:12 request.args = Collections.singletonList(dirPath);
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:37:12 final RawAccessRequest request = new RawAccessRequest();
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:37:12 final RawAccessRequest request = new RawAccessRequest();
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:37:12 request.repoUuid = repo.root().getHash().getValue();
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
08:37:12 request.command = "exists";
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
08:37:12 request.args = Collections.singletonList(dirName);
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
08:37:12 final ImportJob importJob = new ImportJobI();
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:37:12 final ImportJob importJob = new ImportJobI();
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
08:37:12 importJob.setImageName(omero.rtypes.rstring(name));
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
08:37:12 importJob.setImageDescription(omero.rtypes.rstring(desc));
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:37:12 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:37:12 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:37:12 final String savedName = sent.getImageName().getValue().toString();
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:37:12 final String savedDesc = sent.getImageDescription().getValue().toString();
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:37:12 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:37:12 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:37:12 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:37:12 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:37:12 RoiResult r = svc.findByImage(image.getId().getValue(),
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:37:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:37:12 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:37:12 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:37:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
08:37:12 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:37:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
08:37:12 table = svc.getTable(f.getId().getValue());
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:37:12 RoiResult r = svc.findByImage(image.getId().getValue(),
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:37:12 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:37:12 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:37:12 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:37:12 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:37:12 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:37:12 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:37:12 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:37:12 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
08:37:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:37:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:37:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:37:12 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:37:12 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:37:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:37:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:37:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:37:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:37:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:37:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:37:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:37:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:37:12 svc.getShapeStatsRestricted(
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:37:12 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
08:37:12 ^
08:37:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:37:12 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:37:12 ^
08:37:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:37:13 request.typesToIgnore = Collections.singletonList("TagAnnotation");
08:37:13 ^
08:37:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:37:13 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
08:37:13 ^
08:37:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:37:13 request.typesToIgnore = Collections.singletonList("Annotation");
08:37:13 ^
08:37:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:37:13 request.typesToIgnore = Collections.singletonList("Annotation");
08:37:13 ^
08:37:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:37:13 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:37:13 ^
08:37:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:37:13 p2.setRelatedTo(p1);
08:37:13 ^
08:37:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:37:13 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
08:37:13 ^
08:37:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:37:13 pixels1.setRelatedTo(pixels2);
08:37:13 ^
08:37:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:37:13 Pixels pixels = pixels1.getRelatedTo();
08:37:13 ^
08:37:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:37:13 Assert.assertNull(pixels1.getRelatedTo());
08:37:13 ^
08:37:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:37:13 pixels1.setRelatedTo(pixels2);
08:37:13 ^
08:37:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:37:13 Pixels pixels = pixels1.getRelatedTo();
08:37:13 ^
08:37:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:37:13 Assert.assertNull(pixels1.getRelatedTo());
08:37:13 ^
08:37:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:37:13 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:37:13 ^
08:37:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:37:13 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:37:13 ^
08:37:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:37:13 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:37:13 ^
08:37:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:37:13 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:37:13 ^
08:37:13Note: Some input files use unchecked or unsafe operations.
08:37:13Note: Recompile with -Xlint:unchecked for details.
08:37:1388 warnings
08:37:13Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_123758038.tmp
08:37:13Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
08:37:13:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:37:13:: delivering :: omero#OmeroJava-test;working@121c5c9aa309 :: 5.6.3-494-3796cdad32-ice36 :: integration :: Mon Aug 05 08:37:02 UTC 2024
08:37:13 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
08:37:13:: publishing :: omero#OmeroJava-test
08:37:13 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-494-3796cdad32-ice36.jar
08:37:13 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-494-3796cdad32-ice36.xml
08:37:1308:37:13build-eclipse:
08:37:13No sub-builds to iterate on
08:37:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:37:1408:37:14retrieve:
08:37:14:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
08:37:14:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:37:1708:37:17prepare:
08:37:17Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:37:2108:37:21release-clients:
08:37:21Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-494-3796cdad32-ice36.zip
08:37:2708:37:27release-zip:
08:37:27Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-494-3796cdad32-ice36.zip
08:37:4008:37:40BUILD SUCCESSFUL
08:37:40Total time: 1 minute 39 seconds
08:37:40++ '[' -d .git ']'
08:37:40++ python3 ./build.py release-src
08:37:40OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
08:37:40Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:37:4008:37:40release-src-git:
08:37:40Releasing openmicroscopy-5.6.3-494-3796cdad32-ice36
08:37:43 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-494-3796cdad32-ice36.zip
08:37:43 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-494-3796cdad32-ice36-base.zip
08:37:4408:37:44BUILD SUCCESSFUL
08:37:44Total time: 4 seconds
08:37:44++ echo BUILD_NUMBER=137
08:37:44++ echo OMERO_BRANCH=merge_ci
08:37:44++ git_info
08:37:44+++ git rev-parse HEAD
08:37:44++ HEAD=3796cdad32268c87a1d382efcf5daf3d57179627
08:37:44++ git log --max-count=1 3796cdad32268c87a1d382efcf5daf3d57179627
08:37:44++ env
08:37:44++ sort
08:37:44Archiving artifacts
08:38:14Finished: SUCCESS
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