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09:50:09 Started by upstream project "Trigger" build number 23
09:50:09 originally caused by:
09:50:09  Started by user devspace
09:50:09 Running as SYSTEM
09:50:09 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
09:50:09 The recommended git tool is: NONE
09:50:09 No credentials specified
09:50:09  > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
09:50:09 Fetching changes from the remote Git repository
09:50:09  > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
09:50:09 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git
09:50:09  > git --version # timeout=10
09:50:09  > git --version # 'git version 2.52.0'
09:50:09  > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
09:50:12  > git rev-parse origin/merge_ci^{commit} # timeout=10
09:50:12 Checking out Revision 916b82979fe290ede6692927383eb4d4acfb15d7 (origin/merge_ci)
09:50:12  > git config core.sparsecheckout # timeout=10
09:50:12  > git checkout -f 916b82979fe290ede6692927383eb4d4acfb15d7 # timeout=10
09:50:16 Commit message: "Add version.properties to etc/omero.properties"
09:50:16  > git rev-list --no-walk 05c9d1bf8ebd213a43ba9ded7fea7c0a748fb869 # timeout=10
09:50:16 Cleaning workspace
09:50:16  > git rev-parse --verify HEAD # timeout=10
09:50:16 Resetting working tree
09:50:16  > git reset --hard # timeout=10
09:50:16  > git clean -fdx # timeout=10
09:50:58 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 13
09:50:59 [OMERO-build] $ /bin/bash -xe /tmp/jenkins1731444064271193782.sh
09:50:59 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
09:50:59 + cd src
09:50:59 + export OMERO_BRANCH=merge_ci
09:50:59 + OMERO_BRANCH=merge_ci
09:50:59 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
09:50:59 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
09:51:34 + source /home/omero/settings.env
09:51:34 ++ OMERO_DB_HOST=pg
09:51:34 ++ OMERO_DB_USER=postgres
09:51:34 ++ OMERO_DB_PASS=
09:51:34 ++ OMERO_ROOT_PASS=omero
09:51:34 ++ OMERO_DATA_DIR=/OMERO
09:51:34 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:51:34 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
09:51:54 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
09:51:55 Collecting zeroc-ice==3.6.5
09:51:56   Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
09:51:59      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.0 MB/s eta 0:00:00
09:51:59 Installing collected packages: zeroc-ice
09:52:02 Successfully installed zeroc-ice-3.6.5
09:52:02 
09:52:02 [notice] A new release of pip available: 22.3.1 -> 26.1.2
09:52:02 [notice] To update, run: python3.11 -m pip install --upgrade pip
09:52:02 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
09:52:03 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
09:52:04 Collecting setuptools<66
09:52:04   Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
09:52:04 Collecting omero-py
09:52:04   Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
09:52:04 Collecting appdirs
09:52:04   Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:52:04 Collecting future
09:52:04   Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:52:05 Collecting numpy<3,>=2
09:52:05   Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
09:52:06 Collecting Pillow>=10.0.0
09:52:06   Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
09:52:06 Collecting PyYAML
09:52:06   Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
09:52:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
09:52:06 Collecting requests
09:52:06   Using cached requests-2.34.2-py3-none-any.whl (73 kB)
09:52:06 Collecting portalocker
09:52:06   Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
09:52:07 Collecting charset_normalizer<4,>=2
09:52:07   Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
09:52:07 Collecting idna<4,>=2.5
09:52:07   Using cached idna-3.18-py3-none-any.whl (65 kB)
09:52:07 Collecting urllib3<3,>=1.26
09:52:07   Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
09:52:07 Collecting certifi>=2023.5.7
09:52:07   Using cached certifi-2026.6.17-py3-none-any.whl (133 kB)
09:52:08 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
09:52:09   Attempting uninstall: setuptools
09:52:09     Found existing installation: setuptools 65.5.1
09:52:09     Uninstalling setuptools-65.5.1:
09:52:10       Successfully uninstalled setuptools-65.5.1
09:53:05 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.6.17 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
09:53:05 
09:53:05 [notice] A new release of pip available: 22.3.1 -> 26.1.2
09:53:05 [notice] To update, run: python3.11 -m pip install --upgrade pip
09:53:05 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
09:53:05 ++ deactivate nondestructive
09:53:05 ++ '[' -n '' ']'
09:53:05 ++ '[' -n '' ']'
09:53:05 ++ hash -r
09:53:05 ++ '[' -n '' ']'
09:53:05 ++ unset VIRTUAL_ENV
09:53:05 ++ unset VIRTUAL_ENV_PROMPT
09:53:05 ++ '[' '!' nondestructive = nondestructive ']'
09:53:05 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
09:53:05 ++ export VIRTUAL_ENV
09:53:05 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:53:05 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:53:05 ++ export PATH
09:53:05 ++ '[' -n '' ']'
09:53:05 ++ '[' -z '' ']'
09:53:05 ++ _OLD_VIRTUAL_PS1=
09:53:05 ++ PS1='(omero-virtualenv) '
09:53:05 ++ export PS1
09:53:05 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
09:53:05 ++ export VIRTUAL_ENV_PROMPT
09:53:05 ++ hash -r
09:53:05 + source docs/hudson/OMERO.sh
09:53:05 ++ set -e
09:53:05 ++ set -u
09:53:05 ++ set -x
09:53:05 ++ source docs/hudson/functions.sh
09:53:05 ++ echo Building merge_ci
09:53:05 Building merge_ci
09:53:05 ++ python3 ./build.py build-dev release-all
09:53:05 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:53:06 
09:53:06 check-ivy:
09:53:06 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
09:53:06 Created dir: /home/omero/workspace/OMERO-build/src/target
09:53:07 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:53:07 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:53:08 
09:53:08 build-scons:
09:53:08 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:53:10 No sub-builds to iterate on
09:53:10 Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:53:11 
09:53:11 buildlist:
09:53:11 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:53:11 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:53:11 
09:53:11 clean:
09:53:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:53:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:53:12 
09:53:12 python-clean:
09:53:12 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:53:12 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-916b82979f-ice36-b14') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:53:12   warnings.warn(
09:53:12 running clean
09:53:12 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
09:53:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:53:13 
09:53:13 python-clean:
09:53:13 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:53:13 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-916b82979f-ice36-b14') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:53:13   warnings.warn(
09:53:13 running clean
09:53:13 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
09:53:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:53:14 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:53:14 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:53:14 
09:53:14 python-clean:
09:53:14 WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:53:14 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-916b82979f-ice36-b14') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:53:14   warnings.warn(
09:53:14 running clean
09:53:14 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
09:53:14 Deleting directory /home/omero/workspace/OMERO-build/src/target
09:53:15 
09:53:15 build-scons:
09:53:15 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:53:17 
09:53:17 build:
09:53:17 No sub-builds to iterate on
09:53:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:53:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:53:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:53:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:53:18 
09:53:18 tools-init:
09:53:18 no-op
09:53:19 
09:53:19 retrieve:
09:53:19 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:53:19 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:54:30 
09:54:30 prepare:
09:54:30 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:54:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
09:54:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
09:54:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:54:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:54:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:54:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
09:54:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:54:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:54:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:54:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:54:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:54:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:54:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:54:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:54:30 
09:54:30 pre-compile:
09:54:30 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:54:31 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:54:40 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:54:44 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:54:45 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:54:48 
09:54:48 compile:
09:54:48 no-op
09:54:49 
09:54:49 package:
09:54:49 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
09:54:52 
09:54:52 install:
09:54:52 :: delivering :: omero#omero_client;working@477d91c674a5 :: 5.6.3-622-916b82979f-ice36-b14 :: integration :: Mon Jul 20 09:53:18 UTC 2026
09:54:52 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
09:54:52 :: publishing :: omero#omero_client
09:54:52 	published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-622-916b82979f-ice36-b14/omero_client-5.6.3-622-916b82979f-ice36-b14.jar
09:54:52 	published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-622-916b82979f-ice36-b14/omero_client-5.6.3-622-916b82979f-ice36-b14.xml
09:54:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:54:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:54:54 
09:54:54 retrieve:
09:54:54 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:54:54 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:54:55 Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:54:55 
09:54:55 dist:
09:54:55 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
09:54:55 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
09:54:55 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:54:55 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:54:55 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
09:54:56 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
09:54:56 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
09:54:57 Entering /home/omero/workspace/OMERO-build/src/components/tests...
09:54:57 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:54:58 
09:54:58 copy-licenses:
09:54:58 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:54:58 Created dir: /home/omero/workspace/OMERO-build/src/dist/share
09:54:58 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
09:54:58 
09:54:58 copy-history:
09:54:58 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:54:58 
09:54:58 copy-etc:
09:54:58 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
09:54:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
09:54:59 
09:54:59 copy-sql:
09:54:59 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
09:55:10 
09:55:10 copy-server:
09:55:10 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
09:55:15 
09:55:15 copy-client:
09:55:15 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
09:55:21 	conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
09:55:26 
09:55:26 update-version:
09:55:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
09:55:26 
09:55:26 create-workdirs:
09:55:26 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
09:55:26 Created dir: /home/omero/workspace/OMERO-build/src/dist/var
09:55:26 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
09:55:26 
09:55:26 copy-luts:
09:55:26 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:55:26 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:55:26 
09:55:26 test-compile:
09:55:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:55:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:55:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:55:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:55:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:55:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:55:28 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:55:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:55:29 
09:55:29 testng-init:
09:55:29 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:55:29 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:55:37 09:55:37,260 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
09:55:37 09:55:37,263 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - No custom configurators were discovered as a service.
09:55:37 09:55:37,263 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
09:55:37 09:55:37,267 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
09:55:37 09:55:37,270 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
09:55:37 09:55:37,272 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
09:55:37 09:55:37,272 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 5 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
09:55:37 09:55:37,272 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
09:55:37 09:55:37,275 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
09:55:37 09:55:37,276 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
09:55:37 09:55:37,278 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:55:37 09:55:37,279 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9794bd - Resource [logback.xml] occurs multiple times on the classpath.
09:55:37 09:55:37,279 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9794bd - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:55:37 09:55:37,279 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9794bd - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
09:55:37 09:55:37,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
09:55:37 09:55:37,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
09:55:37 09:55:37,538 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
09:55:37 09:55:37,541 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@297727ab - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
09:55:37 09:55:37,541 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@297727ab - Please move "immediateFlush" property into the enclosing appender.
09:55:37 09:55:37,616 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@297727ab - Setting the "immediateFlush" property of the enclosing appender to true
09:55:37 09:55:37,618 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
09:55:37 09:55:37,618 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
09:55:37 09:55:37,618 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
09:55:37 09:55:37,618 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
09:55:37 09:55:37,618 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
09:55:37 09:55:37,618 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
09:55:37 09:55:37,619 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@47585784 - End of configuration.
09:55:37 09:55:37,622 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4e5563ef - Registering current configuration as safe fallback point
09:55:37 09:55:37,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 347 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
09:55:37 
09:55:37 lifecycle.test-compile:
09:55:37 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:55:37 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:55:38 warning: [options] bootstrap class path not set in conjunction with -source 8
09:55:38 warning: [options] source value 8 is obsolete and will be removed in a future release
09:55:38 warning: [options] target value 8 is obsolete and will be removed in a future release
09:55:38 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
09:55:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:55:39 import omero.grid.RawAccessRequest;
09:55:39                  ^
09:55:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:55:40 import omero.grid.RawAccessRequest;
09:55:40                  ^
09:55:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:55:40 import omero.grid.RawAccessRequest;
09:55:40                  ^
09:55:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
09:55:40 import omero.model.ImportJob;
09:55:40                   ^
09:55:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:55:40 import omero.model.ImportJobI;
09:55:40                   ^
09:55:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
09:55:41         IObject link = (IObject) linkClass.newInstance();
09:55:41                                           ^
09:55:41   where T is a type-variable:
09:55:41     T extends Object declared in class Class
09:55:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
09:55:41         T copy = (T) obj.getClass().newInstance();
09:55:41                                    ^
09:55:41   where T is a type-variable:
09:55:41     T extends Object declared in class Class
09:55:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:55:41         RawAccessRequest raw = new RawAccessRequest();
09:55:41         ^
09:55:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:55:41         RawAccessRequest raw = new RawAccessRequest();
09:55:41                                    ^
09:55:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:55:41         raw.repoUuid = legacy.root().getHash().getValue();
09:55:41            ^
09:55:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
09:55:41         raw.command = "rm";
09:55:41            ^
09:55:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
09:55:41         raw.args = Arrays.asList(path);
09:55:41            ^
09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
09:55:42         final IObject link = linkClass.newInstance();
09:55:42                                       ^
09:55:42   where T is a type-variable:
09:55:42     T extends Object declared in class Class
09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
09:55:42             originalLink.setChild(annotationClass.newInstance());
09:55:42                                                  ^
09:55:42   where T is a type-variable:
09:55:42     T extends Object declared in class Class
09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:55:42         RoiResult r = svc.findByImage(id, new RoiOptions());
09:55:42                          ^
09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:55:42         final RawAccessRequest request = new RawAccessRequest();
09:55:42               ^
09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:55:42         final RawAccessRequest request = new RawAccessRequest();
09:55:42                                              ^
09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:55:42         request.repoUuid = repo.root().getHash().getValue();
09:55:42                ^
09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
09:55:42         request.command = "exists";
09:55:42                ^
09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
09:55:42         request.args = Collections.singletonList(dirPath);
09:55:42                ^
09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:55:42         final RawAccessRequest request = new RawAccessRequest();
09:55:42               ^
09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:55:42         final RawAccessRequest request = new RawAccessRequest();
09:55:42                                              ^
09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:55:42         request.repoUuid = repo.root().getHash().getValue();
09:55:42                ^
09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
09:55:42         request.command = "exists";
09:55:42                ^
09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
09:55:42         request.args = Collections.singletonList(dirName);
09:55:42                ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
09:55:43         final ImportJob importJob = new ImportJobI();
09:55:43               ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:55:43         final ImportJob importJob = new ImportJobI();
09:55:43                                         ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
09:55:43         importJob.setImageName(omero.rtypes.rstring(name));
09:55:43                  ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
09:55:43         importJob.setImageDescription(omero.rtypes.rstring(desc));
09:55:43                  ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:55:43         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:55:43         ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:55:43         ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:55:43                           ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:55:43         final String savedName = sent.getImageName().getValue().toString();
09:55:43                                      ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:55:43         final String savedDesc = sent.getImageDescription().getValue().toString();
09:55:43                                      ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:55:43         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:55:43               ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:55:43         final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:55:43                                               ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:55:43         final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
09:55:43                                                        ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:55:43         final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
09:55:43                                                        ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:55:43         RoiResult r = svc.findByImage(image.getId().getValue(),
09:55:43                          ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:55:43         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:55:43                                 ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:55:43         l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:55:43                ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:55:43         l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:55:43                ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:55:43         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:55:43                                 ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
09:55:43         Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
09:55:43                                          ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:55:43         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:55:43                                 ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
09:55:43         table = svc.getTable(f.getId().getValue());
09:55:43                    ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:55:43         RoiResult r = svc.findByImage(image.getId().getValue(),
09:55:43                          ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:55:43         r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
09:55:43                ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:55:43         r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
09:55:43                ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:55:43         r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
09:55:43                ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:55:43         r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
09:55:43                ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:55:43             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:55:43                   ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:55:43             null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:55:43                                   ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:55:43             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:55:43                                    ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:55:43             new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:55:43                                                    ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
09:55:43             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:55:43                                       ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:55:43             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:55:43                                                        ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:55:43             Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:55:43                                                                        ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:55:43         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:55:43                                        ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:55:43         inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:55:43                                                         ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:55:43         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:55:43                                        ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:55:43         inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:55:43                                                        ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:55:43         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:55:43                                        ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:55:43         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:55:43                                                        ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:55:43         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:55:43                                        ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:55:43         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:55:43                                                        ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:55:43         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:55:43                                        ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
09:55:43         inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:55:43                                                        ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:55:43                 svc.getShapeStatsRestricted(
09:55:43                    ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:55:43         final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
09:55:43                                        ^
09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:55:43         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:55:43                                      ^
09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:55:44         request.typesToIgnore = Collections.singletonList("TagAnnotation");
09:55:44                ^
09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:55:44         request.typesToIgnore = Collections.singletonList("IAnnotationLink");
09:55:44                ^
09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:55:44         request.typesToIgnore = Collections.singletonList("Annotation");
09:55:44                ^
09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:55:44                     request.typesToIgnore = Collections.singletonList("Annotation");
09:55:44                            ^
09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:55:44         projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:55:44                                      ^
09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:55:44         p2.setRelatedTo(p1);
09:55:44           ^
09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:55:44         Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
09:55:44                                           ^
09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:55:44         pixels1.setRelatedTo(pixels2);
09:55:44                ^
09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:55:44         Pixels pixels = pixels1.getRelatedTo();
09:55:44                                ^
09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:55:44         Assert.assertNull(pixels1.getRelatedTo());
09:55:44                                  ^
09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:55:44         pixels1.setRelatedTo(pixels2);
09:55:44                ^
09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:55:44         Pixels pixels = pixels1.getRelatedTo();
09:55:44                                ^
09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:55:44         Assert.assertNull(pixels1.getRelatedTo());
09:55:44                                  ^
09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:55:44         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:55:44                                 ^
09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:55:44         l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:55:44                ^
09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:55:44         List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:55:44                                 ^
09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:55:44         l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:55:44                ^
09:55:44 Note: Some input files use unchecked or unsafe operations.
09:55:44 Note: Recompile with -Xlint:unchecked for details.
09:55:44 91 warnings
09:55:44 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1226015952.tmp
09:55:44 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
09:55:45 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:55:45 :: delivering :: omero#OmeroJava-test;working@477d91c674a5 :: 5.6.3-622-916b82979f-ice36-b14 :: integration :: Mon Jul 20 09:55:28 UTC 2026
09:55:45 	delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
09:55:45 :: publishing :: omero#OmeroJava-test
09:55:45 	published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-622-916b82979f-ice36-b14.jar
09:55:45 	published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-622-916b82979f-ice36-b14.xml
09:55:45 
09:55:45 build-eclipse:
09:55:45 No sub-builds to iterate on
09:55:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:55:46 
09:55:46 retrieve:
09:55:46 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:55:46 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:55:50 
09:55:50 prepare:
09:55:50 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:55:53 
09:55:53 release-clients:
09:55:53 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-622-916b82979f-ice36-b14.zip
09:55:59 
09:55:59 release-zip:
09:55:59 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-622-916b82979f-ice36-b14.zip
09:56:11 
09:56:11 BUILD SUCCESSFUL
09:56:11 Total time: 3 minutes 5 seconds
09:56:11 ++ '[' -d .git ']'
09:56:11 ++ python3 ./build.py release-src
09:56:11 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:56:13 
09:56:13 release-src-git:
09:56:13 Releasing openmicroscopy-5.6.3-622-916b82979f-ice36-b14
09:56:14   - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-622-916b82979f-ice36-b14.zip
09:56:14   - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-622-916b82979f-ice36-b14-base.zip
09:56:16 
09:56:16 BUILD SUCCESSFUL
09:56:16 Total time: 4 seconds
09:56:16 ++ echo BUILD_NUMBER=14
09:56:16 ++ echo OMERO_BRANCH=merge_ci
09:56:16 ++ git_info
09:56:17 +++ git rev-parse HEAD
09:56:17 ++ HEAD=916b82979fe290ede6692927383eb4d4acfb15d7
09:56:17 ++ git log --max-count=1 916b82979fe290ede6692927383eb4d4acfb15d7
09:56:17 ++ env
09:56:17 ++ sort
09:56:17 Archiving artifacts
09:56:34 Finished: SUCCESS