14:12:23Started by upstream project "Trigger" build number 1714:12:23originally caused by:
14:12:23 Started by user devspace14:12:23 Restarted from build #16, stage OMERO Jars
14:12:23Running as SYSTEM
14:12:23Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
14:12:23The recommended git tool is: NONE
14:12:23No credentials specified
14:12:23 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
14:12:23Fetching changes from the remote Git repository
14:12:23 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
14:12:23Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git14:12:23 > git --version # timeout=10
14:12:23 > git --version # 'git version 2.39.3'
14:12:23 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
14:12:23 > git rev-parse origin/merge_ci^{commit} # timeout=10
14:12:23Checking out Revision 54c08a8db8f2530bc217ffc119c1bfaeb17e3415 (origin/merge_ci)
14:12:23 > git config core.sparsecheckout # timeout=10
14:12:23 > git checkout -f 54c08a8db8f2530bc217ffc119c1bfaeb17e3415 # timeout=10
14:12:23Commit message: "Add version.properties to etc/omero.properties"
14:12:23 > git rev-list --no-walk 4eeebf6f54501b7148e1f9f93ec8439870a6e007 # timeout=10
14:12:23Cleaning workspace
14:12:23 > git rev-parse --verify HEAD # timeout=10
14:12:23Resetting working tree
14:12:23 > git reset --hard # timeout=10
14:12:23 > git clean -fdx # timeout=10
14:12:24Copied 6 artifacts from "OMERO-python-superbuild-build" build number 1414:12:24[OMERO-build] $ /bin/bash -xe /tmp/jenkins13604102583520540125.sh
14:12:24+ mv omero-scripts/dist/omero-scripts-5.8.1.dev0.tar.gz .
14:12:24+ cd src
14:12:24+ export OMERO_BRANCH=merge_ci
14:12:24+ OMERO_BRANCH=merge_ci
14:12:24+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
14:12:24+ source /home/omero/settings.env
14:12:24++ OMERO_DB_HOST=pg
14:12:24++ OMERO_DB_USER=postgres
14:12:24++ OMERO_DB_PASS=
14:12:24++ OMERO_ROOT_PASS=omero
14:12:24++ OMERO_DATA_DIR=/OMERO
14:12:24++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
14:12:24+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
14:12:25+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl14:12:26Collecting zeroc-ice==3.6.5
14:12:26 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
14:12:28WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
14:12:28You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
14:12:28+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
14:12:29Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.2.0)
14:12:29Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.1)
14:12:29Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
14:12:29Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
14:12:29Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
14:12:29Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
14:12:29Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
14:12:29Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
14:12:29Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
14:12:29Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
14:12:29Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
14:12:29Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
14:12:29Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
14:12:29Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
14:12:30WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
14:12:30You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
14:12:30+ source docs/hudson/OMERO.sh
14:12:30++ set -e
14:12:30++ set -u
14:12:30++ set -x
14:12:30++ source docs/hudson/functions.sh
14:12:30++ echo Building merge_ci
14:12:30Building merge_ci
14:12:30++ python3 ./build.py build-dev release-all
14:12:30OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
14:12:30Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
14:12:3014:12:30check-ivy:
14:12:30Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
14:12:30Created dir: /home/omero/workspace/OMERO-build/src/target
14:12:30:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:12:30:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:12:3114:12:31build-scons:
14:12:31Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
14:12:31No sub-builds to iterate on
14:12:31Entering /home/omero/workspace/OMERO-build/src/components/tools...
14:12:3114:12:31buildlist:
14:12:31:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:12:31:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:12:3114:12:31clean:
14:12:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:12:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:12:3114:12:31python-clean:
14:12:31WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:12:31/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-54c08a8db8-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:12:31 warnings.warn(
14:12:31running clean
14:12:32Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
14:12:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
14:12:3214:12:32python-clean:
14:12:32WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:12:32/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-54c08a8db8-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:12:32 warnings.warn(
14:12:32running clean
14:12:32Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
14:12:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:12:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:12:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:12:3214:12:32python-clean:
14:12:32WARNING: '' not a valid package name; please use only .-separated package names in setup.py
14:12:32/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-437-54c08a8db8-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
14:12:32 warnings.warn(
14:12:32running clean
14:12:32Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
14:12:32Deleting directory /home/omero/workspace/OMERO-build/src/target
14:12:3214:12:32build-scons:
14:12:32Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
14:12:3214:12:32build:
14:12:32No sub-builds to iterate on
14:12:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:12:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:12:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
14:12:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:12:3214:12:32tools-init:
14:12:32no-op
14:12:3214:12:32retrieve:
14:12:32:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:12:32:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:12:33WARNING: An illegal reflective access operation has occurred
14:12:33WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
14:12:33WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
14:12:33WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
14:12:33WARNING: All illegal access operations will be denied in a future release
14:13:2414:13:24prepare:
14:13:24Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
14:13:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
14:13:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
14:13:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:13:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:13:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
14:13:24Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
14:13:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:13:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:13:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:13:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:13:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:13:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:13:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
14:13:24Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
14:13:2414:13:24pre-compile:
14:13:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:13:24Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:13:25Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:13:25Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:13:25Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
14:13:2514:13:25compile:
14:13:25no-op
14:13:2514:13:25package:
14:13:25Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
14:13:2514:13:25install:
14:13:25:: delivering :: omero#omero_client;working@10aac2d9aa47 :: 5.6.3-437-54c08a8db8-ice36 :: integration :: Wed Mar 27 14:12:32 UTC 2024
14:13:25 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
14:13:25:: publishing :: omero#omero_client
14:13:25 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-437-54c08a8db8-ice36/omero_client-5.6.3-437-54c08a8db8-ice36.jar
14:13:25 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-437-54c08a8db8-ice36/omero_client-5.6.3-437-54c08a8db8-ice36.xml
14:13:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:13:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:13:2614:13:26retrieve:
14:13:26:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:13:26:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:13:26Entering /home/omero/workspace/OMERO-build/src/components/tools...
14:13:2614:13:26dist:
14:13:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
14:13:26Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
14:13:26Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
14:13:26Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero-scripts-5.8.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
14:13:26Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
14:13:26Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
14:13:26Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
14:13:26Entering /home/omero/workspace/OMERO-build/src/components/tests...
14:13:26Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
14:13:2614:13:26copy-licenses:
14:13:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
14:13:26Created dir: /home/omero/workspace/OMERO-build/src/dist/share
14:13:26Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
14:13:2614:13:26copy-history:
14:13:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
14:13:2614:13:26copy-etc:
14:13:26Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
14:13:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
14:13:2614:13:26copy-sql:
14:13:26Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
14:13:4214:13:42copy-server:
14:13:42 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
14:13:42 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/annotations.jar in [server]: 2.17.100 won
14:13:4214:13:42copy-client:
14:13:42Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
14:13:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
14:13:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/annotations.jar in [client]: 2.17.100 won
14:13:4414:13:44update-version:
14:13:44Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
14:13:4414:13:44create-workdirs:
14:13:44Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
14:13:44Created dir: /home/omero/workspace/OMERO-build/src/dist/var
14:13:4414:13:44copy-luts:
14:13:44Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
14:13:44Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
14:13:4414:13:44test-compile:
14:13:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:13:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
14:13:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:13:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
14:13:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:13:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
14:13:44Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
14:13:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:13:4414:13:44testng-init:
14:13:44:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:13:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:13:4714:13:47,084 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
14:13:4714:13:47,087 |-INFO in ch.qos.logback.classic.util.ContextInitializer@560def6c - No custom configurators were discovered as a service.
14:13:4714:13:47,087 |-INFO in ch.qos.logback.classic.util.ContextInitializer@560def6c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
14:13:4714:13:47,090 |-INFO in ch.qos.logback.classic.util.ContextInitializer@560def6c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
14:13:4714:13:47,091 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
14:13:4714:13:47,091 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
14:13:4714:13:47,092 |-INFO in ch.qos.logback.classic.util.ContextInitializer@560def6c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
14:13:4714:13:47,092 |-INFO in ch.qos.logback.classic.util.ContextInitializer@560def6c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
14:13:4714:13:47,093 |-INFO in ch.qos.logback.classic.util.ContextInitializer@560def6c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
14:13:4714:13:47,094 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
14:13:4714:13:47,094 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
14:13:4714:13:47,095 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4977e352 - Resource [logback.xml] occurs multiple times on the classpath.
14:13:4714:13:47,095 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4977e352 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
14:13:4714:13:47,095 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@4977e352 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
14:13:4714:13:47,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
14:13:4714:13:47,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
14:13:4714:13:47,318 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
14:13:4714:13:47,320 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@17c3a3 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
14:13:4714:13:47,320 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@17c3a3 - Please move "immediateFlush" property into the enclosing appender.
14:13:4714:13:47,385 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@17c3a3 - Setting the "immediateFlush" property of the enclosing appender to true
14:13:4714:13:47,385 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
14:13:4714:13:47,386 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
14:13:4714:13:47,386 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
14:13:4714:13:47,386 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
14:13:4714:13:47,386 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
14:13:4714:13:47,386 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
14:13:4714:13:47,387 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1d2fd73c - End of configuration.
14:13:4714:13:47,389 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@24602d7a - Registering current configuration as safe fallback point
14:13:4714:13:47,389 |-INFO in ch.qos.logback.classic.util.ContextInitializer@560def6c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 296 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
14:13:4714:13:47lifecycle.test-compile:
14:13:47Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
14:13:47Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
14:13:47warning: [options] bootstrap class path not set in conjunction with -source 8
14:13:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:13:48import omero.grid.RawAccessRequest;
14:13:48 ^
14:13:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:13:49import omero.grid.RawAccessRequest;
14:13:49 ^
14:13:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:13:49import omero.grid.RawAccessRequest;
14:13:49 ^
14:13:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
14:13:49import omero.model.ImportJob;
14:13:49 ^
14:13:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
14:13:49import omero.model.ImportJobI;
14:13:49 ^
14:13:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
14:13:49 IObject link = (IObject) linkClass.newInstance();
14:13:49 ^
14:13:49 where T is a type-variable:
14:13:49 T extends Object declared in class Class
14:13:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
14:13:50 T copy = (T) obj.getClass().newInstance();
14:13:50 ^
14:13:50 where T is a type-variable:
14:13:50 T extends Object declared in class Class
14:13:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:13:50 RawAccessRequest raw = new RawAccessRequest();
14:13:50 ^
14:13:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:13:50 RawAccessRequest raw = new RawAccessRequest();
14:13:50 ^
14:13:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
14:13:50 raw.repoUuid = legacy.root().getHash().getValue();
14:13:50 ^
14:13:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
14:13:50 raw.command = "rm";
14:13:50 ^
14:13:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
14:13:50 raw.args = Arrays.asList(path);
14:13:50 ^
14:13:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
14:13:50 final IObject link = linkClass.newInstance();
14:13:50 ^
14:13:50 where T is a type-variable:
14:13:50 T extends Object declared in class Class
14:13:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
14:13:50 originalLink.setChild(annotationClass.newInstance());
14:13:50 ^
14:13:50 where T is a type-variable:
14:13:50 T extends Object declared in class Class
14:13:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
14:13:50 RoiResult r = svc.findByImage(id, new RoiOptions());
14:13:50 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:13:51 final RawAccessRequest request = new RawAccessRequest();
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:13:51 final RawAccessRequest request = new RawAccessRequest();
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
14:13:51 request.repoUuid = repo.root().getHash().getValue();
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
14:13:51 request.command = "exists";
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
14:13:51 request.args = Collections.singletonList(dirPath);
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:13:51 final RawAccessRequest request = new RawAccessRequest();
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
14:13:51 final RawAccessRequest request = new RawAccessRequest();
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
14:13:51 request.repoUuid = repo.root().getHash().getValue();
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
14:13:51 request.command = "exists";
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
14:13:51 request.args = Collections.singletonList(dirName);
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
14:13:51 final ImportJob importJob = new ImportJobI();
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
14:13:51 final ImportJob importJob = new ImportJobI();
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
14:13:51 importJob.setImageName(omero.rtypes.rstring(name));
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
14:13:51 importJob.setImageDescription(omero.rtypes.rstring(desc));
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
14:13:51 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
14:13:51 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
14:13:51 final String savedName = sent.getImageName().getValue().toString();
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
14:13:51 final String savedDesc = sent.getImageDescription().getValue().toString();
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
14:13:51 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
14:13:51 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
14:13:51 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
14:13:51 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
14:13:51 RoiResult r = svc.findByImage(image.getId().getValue(),
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:13:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:13:51 l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:13:51 l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:13:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
14:13:51 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:13:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
14:13:51 table = svc.getTable(f.getId().getValue());
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
14:13:51 RoiResult r = svc.findByImage(image.getId().getValue(),
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
14:13:51 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
14:13:51 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
14:13:51 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
14:13:51 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
14:13:51 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
14:13:51 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
14:13:51 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
14:13:51 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
14:13:51 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
14:13:51 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
14:13:51 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
14:13:51 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
14:13:51 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
14:13:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
14:13:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
14:13:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
14:13:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
14:13:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
14:13:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
14:13:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
14:13:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
14:13:51 svc.getShapeStatsRestricted(
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
14:13:51 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:13:51 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:13:51 request.typesToIgnore = Collections.singletonList("TagAnnotation");
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:13:51 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:13:51 request.typesToIgnore = Collections.singletonList("Annotation");
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
14:13:51 request.typesToIgnore = Collections.singletonList("Annotation");
14:13:51 ^
14:13:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:13:51 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
14:13:51 ^
14:13:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:13:52 p2.setRelatedTo(p1);
14:13:52 ^
14:13:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:13:52 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
14:13:52 ^
14:13:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:13:52 pixels1.setRelatedTo(pixels2);
14:13:52 ^
14:13:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:13:52 Pixels pixels = pixels1.getRelatedTo();
14:13:52 ^
14:13:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:13:52 Assert.assertNull(pixels1.getRelatedTo());
14:13:52 ^
14:13:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
14:13:52 pixels1.setRelatedTo(pixels2);
14:13:52 ^
14:13:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:13:52 Pixels pixels = pixels1.getRelatedTo();
14:13:52 ^
14:13:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
14:13:52 Assert.assertNull(pixels1.getRelatedTo());
14:13:52 ^
14:13:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:13:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:13:52 ^
14:13:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:13:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:13:52 ^
14:13:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:13:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
14:13:52 ^
14:13:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
14:13:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
14:13:52 ^
14:13:52Note: Some input files use unchecked or unsafe operations.
14:13:52Note: Recompile with -Xlint:unchecked for details.
14:13:5288 warnings
14:13:52Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_752390038.tmp
14:13:52Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
14:13:52:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:13:52:: delivering :: omero#OmeroJava-test;working@10aac2d9aa47 :: 5.6.3-437-54c08a8db8-ice36 :: integration :: Wed Mar 27 14:13:44 UTC 2024
14:13:52 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
14:13:52:: publishing :: omero#OmeroJava-test
14:13:52 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-437-54c08a8db8-ice36.jar
14:13:52 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-437-54c08a8db8-ice36.xml
14:13:5214:13:52build-eclipse:
14:13:52No sub-builds to iterate on
14:13:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
14:13:5214:13:52retrieve:
14:13:52:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
14:13:52:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
14:13:5514:13:55prepare:
14:13:55Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
14:13:5814:13:58release-clients:
14:13:58Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-437-54c08a8db8-ice36.zip
14:14:0414:14:04release-zip:
14:14:04Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-437-54c08a8db8-ice36.zip
14:14:1614:14:16BUILD SUCCESSFUL
14:14:16Total time: 1 minute 45 seconds
14:14:16++ '[' -d .git ']'
14:14:16++ python3 ./build.py release-src
14:14:16OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
14:14:16Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
14:14:1614:14:16release-src-git:
14:14:16Releasing openmicroscopy-5.6.3-437-54c08a8db8-ice36
14:14:17 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-437-54c08a8db8-ice36.zip
14:14:17 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-437-54c08a8db8-ice36-base.zip
14:14:1914:14:19BUILD SUCCESSFUL
14:14:19Total time: 3 seconds
14:14:19++ echo BUILD_NUMBER=14
14:14:19++ echo OMERO_BRANCH=merge_ci
14:14:19++ git_info
14:14:19+++ git rev-parse HEAD
14:14:19++ HEAD=54c08a8db8f2530bc217ffc119c1bfaeb17e3415
14:14:19++ git log --max-count=1 54c08a8db8f2530bc217ffc119c1bfaeb17e3415
14:14:19++ env
14:14:19++ sort
14:14:19Archiving artifacts
14:14:47Finished: SUCCESS
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