09:58:00Started by upstream project "Trigger" build number 20609:58:00originally caused by:
09:58:00 Started by user devspace09:58:00Running as SYSTEM
09:58:00Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
09:58:00The recommended git tool is: NONE
09:58:00No credentials specified
09:58:00 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
09:58:00Fetching changes from the remote Git repository
09:58:00 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
09:58:00Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git09:58:00 > git --version # timeout=10
09:58:00 > git --version # 'git version 2.39.3'
09:58:00 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
09:58:06 > git rev-parse origin/merge_ci^{commit} # timeout=10
09:58:06Checking out Revision fd852ee75da2def9e9392c6736957f5a53488ed2 (origin/merge_ci)
09:58:06 > git config core.sparsecheckout # timeout=10
09:58:06 > git checkout -f fd852ee75da2def9e9392c6736957f5a53488ed2 # timeout=10
09:58:07Commit message: "Add version.properties to etc/omero.properties"
09:58:07 > git rev-list --no-walk 06f46812e76011a37081e314d4c257ce949680c3 # timeout=10
09:58:07Cleaning workspace
09:58:07 > git rev-parse --verify HEAD # timeout=10
09:58:07Resetting working tree
09:58:07 > git reset --hard # timeout=10
09:58:07 > git clean -fdx # timeout=10
09:58:07Copied 6 artifacts from "OMERO-python-superbuild-build" build number 16909:58:07[OMERO-build] $ /bin/bash -xe /tmp/jenkins10844511523199538280.sh
09:58:07+ mv omero-scripts/dist/omero_scripts-5.8.4.dev0.tar.gz .
09:58:07+ cd src
09:58:07+ export OMERO_BRANCH=merge_ci
09:58:07+ OMERO_BRANCH=merge_ci
09:58:07+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
09:58:07+ source /home/omero/settings.env
09:58:07++ OMERO_DB_HOST=pg
09:58:07++ OMERO_DB_USER=postgres
09:58:07++ OMERO_DB_PASS=
09:58:07++ OMERO_ROOT_PASS=omero
09:58:07++ OMERO_DATA_DIR=/OMERO
09:58:07++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:58:07+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
09:58:11+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl09:58:13Collecting zeroc-ice==3.6.5
09:58:14 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
09:58:16WARNING: You are using pip version 21.2.3; however, version 24.2 is available.
09:58:16You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
09:58:16+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
09:58:16Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (74.1.2)
09:58:17Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.4)
09:58:17Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
09:58:17Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
09:58:17Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
09:58:17Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
09:58:17Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
09:58:17Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
09:58:17Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
09:58:17Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
09:58:17Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
09:58:17Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
09:58:17Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
09:58:17Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
09:58:17WARNING: You are using pip version 21.2.3; however, version 24.2 is available.
09:58:17You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
09:58:17+ source docs/hudson/OMERO.sh
09:58:17++ set -e
09:58:17++ set -u
09:58:17++ set -x
09:58:17++ source docs/hudson/functions.sh
09:58:17++ echo Building merge_ci
09:58:17Building merge_ci
09:58:17++ python3 ./build.py build-dev release-all
09:58:17OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
09:58:17Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:58:1809:58:18check-ivy:
09:58:18Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
09:58:18Created dir: /home/omero/workspace/OMERO-build/src/target
09:58:18:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:58:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:58:1909:58:19build-scons:
09:58:19Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:58:19No sub-builds to iterate on
09:58:19Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:58:2009:58:20buildlist:
09:58:20:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:58:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:58:2009:58:20clean:
09:58:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:58:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:58:2009:58:20python-clean:
09:58:20WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:58:20/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-504-fd852ee75d-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:58:20 warnings.warn(
09:58:20running clean
09:58:20Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
09:58:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:58:2109:58:21python-clean:
09:58:21WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:58:21/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-504-fd852ee75d-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:58:21 warnings.warn(
09:58:21running clean
09:58:21Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
09:58:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:58:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:58:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:58:2109:58:21python-clean:
09:58:21WARNING: '' not a valid package name; please use only .-separated package names in setup.py
09:58:21/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-504-fd852ee75d-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
09:58:21 warnings.warn(
09:58:21running clean
09:58:21Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
09:58:21Deleting directory /home/omero/workspace/OMERO-build/src/target
09:58:2109:58:21build-scons:
09:58:21Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
09:58:2109:58:21build:
09:58:21No sub-builds to iterate on
09:58:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:58:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:58:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:58:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:58:2109:58:21tools-init:
09:58:21no-op
09:58:2209:58:22retrieve:
09:58:22:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:58:22:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:58:22WARNING: An illegal reflective access operation has occurred
09:58:22WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
09:58:22WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
09:58:22WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
09:58:22WARNING: All illegal access operations will be denied in a future release
09:58:5109:58:51prepare:
09:58:51Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:58:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
09:58:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
09:58:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:58:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:58:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:58:51Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
09:58:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:58:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:58:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:58:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:58:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:58:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:58:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
09:58:51Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
09:58:5109:58:51pre-compile:
09:58:51Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:58:51Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:58:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:58:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:58:52Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
09:58:5209:58:52compile:
09:58:52no-op
09:58:5209:58:52package:
09:58:52Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
09:58:5209:58:52install:
09:58:52:: delivering :: omero#omero_client;working@8b1804e913d2 :: 5.6.3-504-fd852ee75d-ice36 :: integration :: Wed Sep 11 09:58:21 UTC 2024
09:58:52 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
09:58:52:: publishing :: omero#omero_client
09:58:52 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-504-fd852ee75d-ice36/omero_client-5.6.3-504-fd852ee75d-ice36.jar
09:58:52 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-504-fd852ee75d-ice36/omero_client-5.6.3-504-fd852ee75d-ice36.xml
09:58:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:58:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:58:5309:58:53retrieve:
09:58:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:58:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:58:53Entering /home/omero/workspace/OMERO-build/src/components/tools...
09:58:5309:58:53dist:
09:58:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
09:58:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
09:58:53Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:58:53Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
09:58:53Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
09:58:53Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
09:58:53Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
09:58:53Entering /home/omero/workspace/OMERO-build/src/components/tests...
09:58:53Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:58:5309:58:53copy-licenses:
09:58:53Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:58:53Created dir: /home/omero/workspace/OMERO-build/src/dist/share
09:58:53Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
09:58:5309:58:53copy-history:
09:58:53Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
09:58:5309:58:53copy-etc:
09:58:53Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
09:58:53Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
09:58:5309:58:53copy-sql:
09:58:53Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
09:59:0009:59:00copy-server:
09:59:00 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
09:59:0009:59:00copy-client:
09:59:00Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
09:59:01 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
09:59:0109:59:01update-version:
09:59:01Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
09:59:0109:59:01create-workdirs:
09:59:01Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
09:59:01Created dir: /home/omero/workspace/OMERO-build/src/dist/var
09:59:0109:59:01copy-luts:
09:59:01Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:59:01Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
09:59:0109:59:01test-compile:
09:59:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:59:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
09:59:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:59:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
09:59:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:59:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
09:59:02Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
09:59:02Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:59:0209:59:02testng-init:
09:59:02:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:59:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:59:0609:59:05,997 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
09:59:0609:59:06,000 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - No custom configurators were discovered as a service.
09:59:0609:59:06,000 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
09:59:0609:59:06,003 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
09:59:0609:59:06,004 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
09:59:0609:59:06,004 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
09:59:0609:59:06,005 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
09:59:0609:59:06,005 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
09:59:0609:59:06,007 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
09:59:0609:59:06,007 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
09:59:0609:59:06,008 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:59:0609:59:06,008 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e31b89 - Resource [logback.xml] occurs multiple times on the classpath.
09:59:0609:59:06,008 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e31b89 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
09:59:0609:59:06,008 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e31b89 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
09:59:0609:59:06,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
09:59:0609:59:06,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
09:59:0609:59:06,258 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
09:59:0609:59:06,260 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@42141c59 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
09:59:0609:59:06,260 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@42141c59 - Please move "immediateFlush" property into the enclosing appender.
09:59:0609:59:06,324 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@42141c59 - Setting the "immediateFlush" property of the enclosing appender to true
09:59:0609:59:06,325 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
09:59:0609:59:06,325 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
09:59:0609:59:06,325 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
09:59:0609:59:06,325 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
09:59:0609:59:06,325 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
09:59:0609:59:06,325 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
09:59:0609:59:06,326 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@49854d93 - End of configuration.
09:59:0609:59:06,329 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@29d7d117 - Registering current configuration as safe fallback point
09:59:0609:59:06,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@354aaf03 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 322 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
09:59:0609:59:06lifecycle.test-compile:
09:59:06Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:59:06Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
09:59:07warning: [options] bootstrap class path not set in conjunction with -source 8
09:59:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:59:08import omero.grid.RawAccessRequest;
09:59:08 ^
09:59:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:59:08import omero.grid.RawAccessRequest;
09:59:08 ^
09:59:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:59:08import omero.grid.RawAccessRequest;
09:59:08 ^
09:59:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
09:59:08import omero.model.ImportJob;
09:59:08 ^
09:59:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:59:08import omero.model.ImportJobI;
09:59:08 ^
09:59:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
09:59:09 IObject link = (IObject) linkClass.newInstance();
09:59:09 ^
09:59:09 where T is a type-variable:
09:59:09 T extends Object declared in class Class
09:59:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
09:59:09 T copy = (T) obj.getClass().newInstance();
09:59:09 ^
09:59:09 where T is a type-variable:
09:59:09 T extends Object declared in class Class
09:59:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:59:09 RawAccessRequest raw = new RawAccessRequest();
09:59:09 ^
09:59:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:59:09 RawAccessRequest raw = new RawAccessRequest();
09:59:09 ^
09:59:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:59:09 raw.repoUuid = legacy.root().getHash().getValue();
09:59:09 ^
09:59:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
09:59:09 raw.command = "rm";
09:59:09 ^
09:59:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
09:59:09 raw.args = Arrays.asList(path);
09:59:09 ^
09:59:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
09:59:10 final IObject link = linkClass.newInstance();
09:59:10 ^
09:59:10 where T is a type-variable:
09:59:10 T extends Object declared in class Class
09:59:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
09:59:10 originalLink.setChild(annotationClass.newInstance());
09:59:10 ^
09:59:10 where T is a type-variable:
09:59:10 T extends Object declared in class Class
09:59:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:59:10 RoiResult r = svc.findByImage(id, new RoiOptions());
09:59:10 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:59:11 final RawAccessRequest request = new RawAccessRequest();
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:59:11 final RawAccessRequest request = new RawAccessRequest();
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:59:11 request.repoUuid = repo.root().getHash().getValue();
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
09:59:11 request.command = "exists";
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
09:59:11 request.args = Collections.singletonList(dirPath);
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:59:11 final RawAccessRequest request = new RawAccessRequest();
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
09:59:11 final RawAccessRequest request = new RawAccessRequest();
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
09:59:11 request.repoUuid = repo.root().getHash().getValue();
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
09:59:11 request.command = "exists";
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
09:59:11 request.args = Collections.singletonList(dirName);
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
09:59:11 final ImportJob importJob = new ImportJobI();
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
09:59:11 final ImportJob importJob = new ImportJobI();
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
09:59:11 importJob.setImageName(omero.rtypes.rstring(name));
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
09:59:11 importJob.setImageDescription(omero.rtypes.rstring(desc));
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:59:11 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
09:59:11 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:59:11 final String savedName = sent.getImageName().getValue().toString();
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:59:11 final String savedDesc = sent.getImageDescription().getValue().toString();
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:59:11 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
09:59:11 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
09:59:11 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
09:59:11 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:59:11 RoiResult r = svc.findByImage(image.getId().getValue(),
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:59:11 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:59:11 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:59:11 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:59:11 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
09:59:11 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:59:11 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
09:59:11 table = svc.getTable(f.getId().getValue());
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
09:59:11 RoiResult r = svc.findByImage(image.getId().getValue(),
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:59:11 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
09:59:11 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:59:11 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
09:59:11 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
09:59:11 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
09:59:11 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
09:59:11 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
09:59:11 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
09:59:11 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
09:59:11 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
09:59:11 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
09:59:11 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
09:59:11 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
09:59:11 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
09:59:11 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
09:59:11 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
09:59:11 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
09:59:11 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
09:59:11 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
09:59:11 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
09:59:11 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:59:11 svc.getShapeStatsRestricted(
09:59:11 ^
09:59:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
09:59:11 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
09:59:11 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:59:12 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:59:12 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:59:12 request.typesToIgnore = Collections.singletonList("TagAnnotation");
09:59:12 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:59:12 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
09:59:12 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:59:12 request.typesToIgnore = Collections.singletonList("Annotation");
09:59:12 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
09:59:12 request.typesToIgnore = Collections.singletonList("Annotation");
09:59:12 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:59:12 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
09:59:12 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:59:12 p2.setRelatedTo(p1);
09:59:12 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:59:12 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
09:59:12 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:59:12 pixels1.setRelatedTo(pixels2);
09:59:12 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:59:12 Pixels pixels = pixels1.getRelatedTo();
09:59:12 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:59:12 Assert.assertNull(pixels1.getRelatedTo());
09:59:12 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
09:59:12 pixels1.setRelatedTo(pixels2);
09:59:12 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:59:12 Pixels pixels = pixels1.getRelatedTo();
09:59:12 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
09:59:12 Assert.assertNull(pixels1.getRelatedTo());
09:59:12 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:59:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:59:12 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:59:12 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:59:12 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:59:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
09:59:12 ^
09:59:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
09:59:12 l = svc.getRoiMeasurements(image.getId().getValue(), options);
09:59:12 ^
09:59:12Note: Some input files use unchecked or unsafe operations.
09:59:12Note: Recompile with -Xlint:unchecked for details.
09:59:1288 warnings
09:59:12Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_340631804.tmp
09:59:12Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
09:59:12:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:59:12:: delivering :: omero#OmeroJava-test;working@8b1804e913d2 :: 5.6.3-504-fd852ee75d-ice36 :: integration :: Wed Sep 11 09:59:02 UTC 2024
09:59:12 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
09:59:12:: publishing :: omero#OmeroJava-test
09:59:12 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-504-fd852ee75d-ice36.jar
09:59:12 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-504-fd852ee75d-ice36.xml
09:59:1209:59:12build-eclipse:
09:59:12No sub-builds to iterate on
09:59:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
09:59:1309:59:13retrieve:
09:59:13:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
09:59:13:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
09:59:1709:59:17prepare:
09:59:17Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
09:59:2009:59:20release-clients:
09:59:20Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-504-fd852ee75d-ice36.zip
09:59:2609:59:26release-zip:
09:59:26Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-504-fd852ee75d-ice36.zip
09:59:3809:59:38BUILD SUCCESSFUL
09:59:38Total time: 1 minute 21 seconds
09:59:38++ '[' -d .git ']'
09:59:38++ python3 ./build.py release-src
09:59:38OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
09:59:38Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
09:59:3909:59:39release-src-git:
09:59:39Releasing openmicroscopy-5.6.3-504-fd852ee75d-ice36
09:59:40 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-504-fd852ee75d-ice36.zip
09:59:40 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-504-fd852ee75d-ice36-base.zip
09:59:4209:59:42BUILD SUCCESSFUL
09:59:42Total time: 3 seconds
09:59:42++ echo BUILD_NUMBER=171
09:59:42++ echo OMERO_BRANCH=merge_ci
09:59:42++ git_info
09:59:42+++ git rev-parse HEAD
09:59:42++ HEAD=fd852ee75da2def9e9392c6736957f5a53488ed2
09:59:42++ git log --max-count=1 fd852ee75da2def9e9392c6736957f5a53488ed2
09:59:42++ env
09:59:42++ sort
09:59:42Archiving artifacts
10:00:11Finished: SUCCESS
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