07:59:44Started by upstream project "Trigger" build number 24107:59:44originally caused by:
07:59:44 Started by user devspace07:59:44Running as SYSTEM
07:59:44Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
07:59:44The recommended git tool is: NONE
07:59:44No credentials specified
07:59:44 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
07:59:44Fetching changes from the remote Git repository
07:59:44 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
07:59:44Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git07:59:44 > git --version # timeout=10
07:59:44 > git --version # 'git version 2.43.5'
07:59:44 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
07:59:48 > git rev-parse origin/merge_ci^{commit} # timeout=10
07:59:48Checking out Revision 77dcd6034a45259ab645333bfbaaaa502230a60e (origin/merge_ci)
07:59:48 > git config core.sparsecheckout # timeout=10
07:59:48 > git checkout -f 77dcd6034a45259ab645333bfbaaaa502230a60e # timeout=10
07:59:49Commit message: "Add version.properties to etc/omero.properties"
07:59:49 > git rev-list --no-walk 28b8569e148c73923c986f80a1d92098b6bea047 # timeout=10
07:59:49Cleaning workspace
07:59:49 > git rev-parse --verify HEAD # timeout=10
07:59:49Resetting working tree
07:59:49 > git reset --hard # timeout=10
07:59:49 > git clean -fdx # timeout=10
07:59:49Copied 6 artifacts from "OMERO-python-superbuild-build" build number 19507:59:49[OMERO-build] $ /bin/bash -xe /tmp/jenkins5263381604678143350.sh
07:59:49+ mv omero-scripts/dist/omero_scripts-5.8.4.dev0.tar.gz .
07:59:49+ cd src
07:59:49+ export OMERO_BRANCH=merge_ci
07:59:49+ OMERO_BRANCH=merge_ci
07:59:49+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
07:59:49+ source /home/omero/settings.env
07:59:49++ OMERO_DB_HOST=pg
07:59:49++ OMERO_DB_USER=postgres
07:59:49++ OMERO_DB_PASS=
07:59:49++ OMERO_ROOT_PASS=omero
07:59:49++ OMERO_DATA_DIR=/OMERO
07:59:49++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
07:59:49+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
07:59:51+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl07:59:52Collecting zeroc-ice==3.6.5
07:59:53 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
07:59:56WARNING: You are using pip version 21.2.3; however, version 24.2 is available.
07:59:56You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
07:59:56+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
07:59:56Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (75.1.0)
07:59:57Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.5)
07:59:57Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
07:59:57Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
07:59:57Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
07:59:57Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
07:59:57Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
07:59:57Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
07:59:57Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
07:59:57Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
07:59:57Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
07:59:57Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
07:59:57Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
07:59:57Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
07:59:57WARNING: You are using pip version 21.2.3; however, version 24.2 is available.
07:59:57You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
07:59:57+ source docs/hudson/OMERO.sh
07:59:57++ set -e
07:59:57++ set -u
07:59:57++ set -x
07:59:57++ source docs/hudson/functions.sh
07:59:57++ echo Building merge_ci
07:59:57Building merge_ci
07:59:57++ python3 ./build.py build-dev release-all
07:59:57OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
07:59:57Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
07:59:5807:59:58check-ivy:
07:59:58Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
07:59:58Created dir: /home/omero/workspace/OMERO-build/src/target
07:59:58:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
07:59:58:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:59:5907:59:59build-scons:
07:59:59Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
07:59:59No sub-builds to iterate on
07:59:59Entering /home/omero/workspace/OMERO-build/src/components/tools...
07:59:5907:59:59buildlist:
07:59:59:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
07:59:59:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
07:59:5907:59:59clean:
07:59:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
07:59:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:00:0008:00:00python-clean:
08:00:00WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:00:00/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-77dcd6034a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:00:00 warnings.warn(
08:00:00running clean
08:00:00Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
08:00:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:00:0008:00:00python-clean:
08:00:00WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:00:00/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-77dcd6034a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:00:00 warnings.warn(
08:00:00running clean
08:00:00Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
08:00:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:00:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:00:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:00:0008:00:00python-clean:
08:00:00WARNING: '' not a valid package name; please use only .-separated package names in setup.py
08:00:00/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-77dcd6034a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
08:00:00 warnings.warn(
08:00:00running clean
08:00:00Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
08:00:00Deleting directory /home/omero/workspace/OMERO-build/src/target
08:00:0008:00:00build-scons:
08:00:00Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
08:00:0008:00:00build:
08:00:00No sub-builds to iterate on
08:00:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:00:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:00:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:00:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:00:0008:00:00tools-init:
08:00:00no-op
08:00:0108:00:01retrieve:
08:00:01:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:00:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:00:01WARNING: An illegal reflective access operation has occurred
08:00:01WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
08:00:01WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
08:00:01WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
08:00:01WARNING: All illegal access operations will be denied in a future release
08:00:3108:00:31prepare:
08:00:31Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:00:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
08:00:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
08:00:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:00:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:00:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:00:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
08:00:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:00:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:00:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:00:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:00:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:00:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:00:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
08:00:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
08:00:3108:00:31pre-compile:
08:00:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:00:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:00:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:00:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:00:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
08:00:3108:00:31compile:
08:00:31no-op
08:00:3108:00:31package:
08:00:31Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
08:00:3208:00:32install:
08:00:32:: delivering :: omero#omero_client;working@db6de8e9ca4d :: 5.6.3-513-77dcd6034a-ice36 :: integration :: Tue Oct 08 08:00:00 UTC 2024
08:00:32 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
08:00:32:: publishing :: omero#omero_client
08:00:32 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-513-77dcd6034a-ice36/omero_client-5.6.3-513-77dcd6034a-ice36.jar
08:00:32 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-513-77dcd6034a-ice36/omero_client-5.6.3-513-77dcd6034a-ice36.xml
08:00:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:00:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:00:3208:00:32retrieve:
08:00:32:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:00:32:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:00:33Entering /home/omero/workspace/OMERO-build/src/components/tools...
08:00:3308:00:33dist:
08:00:33Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
08:00:33Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
08:00:33Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:00:33Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
08:00:33Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
08:00:33Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
08:00:33Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
08:00:33Entering /home/omero/workspace/OMERO-build/src/components/tests...
08:00:33Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:00:3308:00:33copy-licenses:
08:00:33Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:00:33Created dir: /home/omero/workspace/OMERO-build/src/dist/share
08:00:33Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
08:00:3308:00:33copy-history:
08:00:33Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
08:00:3308:00:33copy-etc:
08:00:33Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
08:00:33Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
08:00:3308:00:33copy-sql:
08:00:33Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
08:00:4008:00:40copy-server:
08:00:40 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
08:00:4008:00:40copy-client:
08:00:40Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
08:00:41 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
08:00:4108:00:41update-version:
08:00:41Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
08:00:4108:00:41create-workdirs:
08:00:41Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
08:00:41Created dir: /home/omero/workspace/OMERO-build/src/dist/var
08:00:4108:00:41copy-luts:
08:00:41Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:00:41Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
08:00:4108:00:41test-compile:
08:00:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:00:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
08:00:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:00:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
08:00:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:00:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
08:00:42Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
08:00:42Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:00:4208:00:42testng-init:
08:00:42:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:00:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:00:4508:00:45,503 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
08:00:4508:00:45,506 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8f7544a - No custom configurators were discovered as a service.
08:00:4508:00:45,506 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8f7544a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
08:00:4508:00:45,511 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8f7544a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
08:00:4508:00:45,511 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
08:00:4508:00:45,511 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
08:00:4508:00:45,512 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8f7544a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
08:00:4508:00:45,512 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8f7544a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
08:00:4508:00:45,514 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8f7544a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
08:00:4508:00:45,515 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
08:00:4508:00:45,515 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:00:4508:00:45,516 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@151cbba4 - Resource [logback.xml] occurs multiple times on the classpath.
08:00:4508:00:45,516 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@151cbba4 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
08:00:4508:00:45,516 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@151cbba4 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
08:00:4508:00:45,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
08:00:4508:00:45,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
08:00:4508:00:45,789 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
08:00:4508:00:45,790 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3729cdaf - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
08:00:4508:00:45,790 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3729cdaf - Please move "immediateFlush" property into the enclosing appender.
08:00:4508:00:45,876 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3729cdaf - Setting the "immediateFlush" property of the enclosing appender to true
08:00:4508:00:45,877 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
08:00:4508:00:45,877 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
08:00:4508:00:45,877 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
08:00:4508:00:45,877 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
08:00:4508:00:45,877 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
08:00:4508:00:45,877 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
08:00:4508:00:45,879 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@75a45ce - End of configuration.
08:00:4508:00:45,881 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@35bd146b - Registering current configuration as safe fallback point
08:00:4508:00:45,881 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8f7544a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 367 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
08:00:4508:00:45lifecycle.test-compile:
08:00:45Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:00:45Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
08:00:46warning: [options] bootstrap class path not set in conjunction with -source 8
08:00:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:00:47import omero.grid.RawAccessRequest;
08:00:47 ^
08:00:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:00:47import omero.grid.RawAccessRequest;
08:00:47 ^
08:00:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:00:47import omero.grid.RawAccessRequest;
08:00:47 ^
08:00:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
08:00:47import omero.model.ImportJob;
08:00:47 ^
08:00:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:00:47import omero.model.ImportJobI;
08:00:47 ^
08:00:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
08:00:48 IObject link = (IObject) linkClass.newInstance();
08:00:48 ^
08:00:48 where T is a type-variable:
08:00:48 T extends Object declared in class Class
08:00:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
08:00:48 T copy = (T) obj.getClass().newInstance();
08:00:48 ^
08:00:48 where T is a type-variable:
08:00:48 T extends Object declared in class Class
08:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:00:49 RawAccessRequest raw = new RawAccessRequest();
08:00:49 ^
08:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:00:49 RawAccessRequest raw = new RawAccessRequest();
08:00:49 ^
08:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:00:49 raw.repoUuid = legacy.root().getHash().getValue();
08:00:49 ^
08:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
08:00:49 raw.command = "rm";
08:00:49 ^
08:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
08:00:49 raw.args = Arrays.asList(path);
08:00:49 ^
08:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
08:00:49 final IObject link = linkClass.newInstance();
08:00:49 ^
08:00:49 where T is a type-variable:
08:00:49 T extends Object declared in class Class
08:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
08:00:49 originalLink.setChild(annotationClass.newInstance());
08:00:49 ^
08:00:49 where T is a type-variable:
08:00:49 T extends Object declared in class Class
08:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:00:49 RoiResult r = svc.findByImage(id, new RoiOptions());
08:00:49 ^
08:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:00:49 final RawAccessRequest request = new RawAccessRequest();
08:00:49 ^
08:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:00:49 final RawAccessRequest request = new RawAccessRequest();
08:00:49 ^
08:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:00:49 request.repoUuid = repo.root().getHash().getValue();
08:00:49 ^
08:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
08:00:49 request.command = "exists";
08:00:49 ^
08:00:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
08:00:49 request.args = Collections.singletonList(dirPath);
08:00:49 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:00:50 final RawAccessRequest request = new RawAccessRequest();
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
08:00:50 final RawAccessRequest request = new RawAccessRequest();
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
08:00:50 request.repoUuid = repo.root().getHash().getValue();
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
08:00:50 request.command = "exists";
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
08:00:50 request.args = Collections.singletonList(dirName);
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
08:00:50 final ImportJob importJob = new ImportJobI();
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
08:00:50 final ImportJob importJob = new ImportJobI();
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
08:00:50 importJob.setImageName(omero.rtypes.rstring(name));
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
08:00:50 importJob.setImageDescription(omero.rtypes.rstring(desc));
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:00:50 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
08:00:50 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:00:50 final String savedName = sent.getImageName().getValue().toString();
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:00:50 final String savedDesc = sent.getImageDescription().getValue().toString();
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:00:50 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
08:00:50 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
08:00:50 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
08:00:50 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:00:50 RoiResult r = svc.findByImage(image.getId().getValue(),
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:00:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:00:50 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:00:50 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:00:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
08:00:50 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:00:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
08:00:50 table = svc.getTable(f.getId().getValue());
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
08:00:50 RoiResult r = svc.findByImage(image.getId().getValue(),
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:00:50 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
08:00:50 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:00:50 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
08:00:50 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:00:50 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
08:00:50 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:00:50 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
08:00:50 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
08:00:50 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:00:50 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
08:00:50 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:00:50 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
08:00:50 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:00:50 svc.getShapeStatsRestricted(
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
08:00:50 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
08:00:50 ^
08:00:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:00:50 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:00:50 ^
08:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:00:51 request.typesToIgnore = Collections.singletonList("TagAnnotation");
08:00:51 ^
08:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:00:51 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
08:00:51 ^
08:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:00:51 request.typesToIgnore = Collections.singletonList("Annotation");
08:00:51 ^
08:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
08:00:51 request.typesToIgnore = Collections.singletonList("Annotation");
08:00:51 ^
08:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:00:51 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
08:00:51 ^
08:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:00:51 p2.setRelatedTo(p1);
08:00:51 ^
08:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:00:51 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
08:00:51 ^
08:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:00:51 pixels1.setRelatedTo(pixels2);
08:00:51 ^
08:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:00:51 Pixels pixels = pixels1.getRelatedTo();
08:00:51 ^
08:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:00:51 Assert.assertNull(pixels1.getRelatedTo());
08:00:51 ^
08:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
08:00:51 pixels1.setRelatedTo(pixels2);
08:00:51 ^
08:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:00:51 Pixels pixels = pixels1.getRelatedTo();
08:00:51 ^
08:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
08:00:51 Assert.assertNull(pixels1.getRelatedTo());
08:00:51 ^
08:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:00:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:00:51 ^
08:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:00:51 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:00:51 ^
08:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:00:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
08:00:51 ^
08:00:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
08:00:51 l = svc.getRoiMeasurements(image.getId().getValue(), options);
08:00:51 ^
08:00:51Note: Some input files use unchecked or unsafe operations.
08:00:51Note: Recompile with -Xlint:unchecked for details.
08:00:5188 warnings
08:00:51Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1961137680.tmp
08:00:51Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
08:00:51:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:00:51:: delivering :: omero#OmeroJava-test;working@db6de8e9ca4d :: 5.6.3-513-77dcd6034a-ice36 :: integration :: Tue Oct 08 08:00:42 UTC 2024
08:00:51 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
08:00:51:: publishing :: omero#OmeroJava-test
08:00:51 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-513-77dcd6034a-ice36.jar
08:00:51 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-513-77dcd6034a-ice36.xml
08:00:5108:00:51build-eclipse:
08:00:51No sub-builds to iterate on
08:00:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
08:00:5108:00:51retrieve:
08:00:51:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
08:00:51:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
08:00:5408:00:54prepare:
08:00:54Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
08:00:5508:00:55release-clients:
08:00:55Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-513-77dcd6034a-ice36.zip
08:01:0108:01:01release-zip:
08:01:01Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-513-77dcd6034a-ice36.zip
08:01:1308:01:13BUILD SUCCESSFUL
08:01:13Total time: 1 minute 15 seconds
08:01:13++ '[' -d .git ']'
08:01:13++ python3 ./build.py release-src
08:01:13OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
08:01:13Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
08:01:1408:01:14release-src-git:
08:01:14Releasing openmicroscopy-5.6.3-513-77dcd6034a-ice36
08:01:15 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-513-77dcd6034a-ice36.zip
08:01:15 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-513-77dcd6034a-ice36-base.zip
08:01:1708:01:17BUILD SUCCESSFUL
08:01:17Total time: 3 seconds
08:01:17++ echo BUILD_NUMBER=198
08:01:17++ echo OMERO_BRANCH=merge_ci
08:01:17++ git_info
08:01:17+++ git rev-parse HEAD
08:01:17++ HEAD=77dcd6034a45259ab645333bfbaaaa502230a60e
08:01:17++ git log --max-count=1 77dcd6034a45259ab645333bfbaaaa502230a60e
08:01:17++ env
08:01:17++ sort
08:01:17Archiving artifacts
08:01:45Finished: SUCCESS
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