06:55:19Started by upstream project "Trigger" build number 25206:55:19originally caused by:
06:55:19 Started by user devspace06:55:19Running as SYSTEM
06:55:19Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
06:55:19The recommended git tool is: NONE
06:55:19No credentials specified
06:55:19 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
06:55:19Fetching changes from the remote Git repository
06:55:19 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
06:55:19Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git06:55:19 > git --version # timeout=10
06:55:19 > git --version # 'git version 2.43.5'
06:55:19 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
06:55:21 > git rev-parse origin/merge_ci^{commit} # timeout=10
06:55:21Checking out Revision ae72da0f5076a9344298132624261ab39183a2af (origin/merge_ci)
06:55:21 > git config core.sparsecheckout # timeout=10
06:55:21 > git checkout -f ae72da0f5076a9344298132624261ab39183a2af # timeout=10
06:55:21Commit message: "Add version.properties to etc/omero.properties"
06:55:21 > git rev-list --no-walk 326832e70f12e40fb5b5289c7235e7a6487a0ef5 # timeout=10
06:55:21Cleaning workspace
06:55:21 > git rev-parse --verify HEAD # timeout=10
06:55:21Resetting working tree
06:55:21 > git reset --hard # timeout=10
06:55:22 > git clean -fdx # timeout=10
06:55:22Copied 6 artifacts from "OMERO-python-superbuild-build" build number 20506:55:22[OMERO-build] $ /bin/bash -xe /tmp/jenkins9639001280423145791.sh
06:55:22+ mv omero-scripts/dist/omero_scripts-5.8.4.dev0.tar.gz .
06:55:22+ cd src
06:55:22+ export OMERO_BRANCH=merge_ci
06:55:22+ OMERO_BRANCH=merge_ci
06:55:22+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
06:55:22+ source /home/omero/settings.env
06:55:22++ OMERO_DB_HOST=pg
06:55:22++ OMERO_DB_USER=postgres
06:55:22++ OMERO_DB_PASS=
06:55:22++ OMERO_ROOT_PASS=omero
06:55:22++ OMERO_DATA_DIR=/OMERO
06:55:22++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
06:55:22+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
06:55:27+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl06:55:29Collecting zeroc-ice==3.6.5
06:55:30 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
06:55:32WARNING: You are using pip version 21.2.3; however, version 24.2 is available.
06:55:32You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
06:55:32+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
06:55:32Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (75.2.0)
06:55:33Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.5)
06:55:33Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
06:55:33Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
06:55:33Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
06:55:33Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
06:55:33Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
06:55:33Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
06:55:33Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
06:55:33Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
06:55:33Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
06:55:33Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
06:55:33Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
06:55:33Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
06:55:33WARNING: You are using pip version 21.2.3; however, version 24.2 is available.
06:55:33You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
06:55:33+ source docs/hudson/OMERO.sh
06:55:33++ set -e
06:55:33++ set -u
06:55:33++ set -x
06:55:33++ source docs/hudson/functions.sh
06:55:33++ echo Building merge_ci
06:55:33Building merge_ci
06:55:33++ python3 ./build.py build-dev release-all
06:55:33OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
06:55:33Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
06:55:3406:55:34check-ivy:
06:55:34Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
06:55:34Created dir: /home/omero/workspace/OMERO-build/src/target
06:55:34:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:55:34:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:55:3506:55:35build-scons:
06:55:35Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
06:55:35No sub-builds to iterate on
06:55:35Entering /home/omero/workspace/OMERO-build/src/components/tools...
06:55:3606:55:36buildlist:
06:55:36:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:55:36:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:55:3606:55:36clean:
06:55:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:55:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:55:3606:55:36python-clean:
06:55:36WARNING: '' not a valid package name; please use only .-separated package names in setup.py
06:55:36/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-ae72da0f50-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
06:55:36 warnings.warn(
06:55:36running clean
06:55:36Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
06:55:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
06:55:3606:55:36python-clean:
06:55:36WARNING: '' not a valid package name; please use only .-separated package names in setup.py
06:55:36/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-ae72da0f50-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
06:55:36 warnings.warn(
06:55:36running clean
06:55:36Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
06:55:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:55:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:55:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:55:3706:55:37python-clean:
06:55:37WARNING: '' not a valid package name; please use only .-separated package names in setup.py
06:55:37/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-513-ae72da0f50-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
06:55:37 warnings.warn(
06:55:37running clean
06:55:37Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
06:55:37Deleting directory /home/omero/workspace/OMERO-build/src/target
06:55:3706:55:37build-scons:
06:55:37Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
06:55:3706:55:37build:
06:55:37No sub-builds to iterate on
06:55:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:55:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:55:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
06:55:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:55:3706:55:37tools-init:
06:55:37no-op
06:55:3706:55:37retrieve:
06:55:37:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:55:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:55:38WARNING: An illegal reflective access operation has occurred
06:55:38WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
06:55:38WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
06:55:38WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
06:55:38WARNING: All illegal access operations will be denied in a future release
06:56:1306:56:13prepare:
06:56:13Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
06:56:13Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
06:56:13Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
06:56:13Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:56:13Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:56:13Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
06:56:13Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
06:56:13Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:56:13Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:56:13Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:56:13Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:56:13Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:56:13Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:56:13Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
06:56:13Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
06:56:1306:56:13pre-compile:
06:56:13Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:56:13Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:56:13Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:56:14Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:56:14Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
06:56:1406:56:14compile:
06:56:14no-op
06:56:1406:56:14package:
06:56:14Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
06:56:1406:56:14install:
06:56:14:: delivering :: omero#omero_client;working@bdaf9f08f5d1 :: 5.6.3-513-ae72da0f50-ice36 :: integration :: Fri Oct 18 06:55:37 UTC 2024
06:56:14 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
06:56:14:: publishing :: omero#omero_client
06:56:14 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-513-ae72da0f50-ice36/omero_client-5.6.3-513-ae72da0f50-ice36.jar
06:56:14 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-513-ae72da0f50-ice36/omero_client-5.6.3-513-ae72da0f50-ice36.xml
06:56:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:56:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:56:1406:56:14retrieve:
06:56:14:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:56:14:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:56:15Entering /home/omero/workspace/OMERO-build/src/components/tools...
06:56:1506:56:15dist:
06:56:15Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
06:56:15Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
06:56:15Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
06:56:15Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
06:56:15Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
06:56:15Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
06:56:15Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
06:56:15Entering /home/omero/workspace/OMERO-build/src/components/tests...
06:56:15Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
06:56:1506:56:15copy-licenses:
06:56:15Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
06:56:15Created dir: /home/omero/workspace/OMERO-build/src/dist/share
06:56:15Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
06:56:1506:56:15copy-history:
06:56:15Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
06:56:1506:56:15copy-etc:
06:56:15Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
06:56:15Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
06:56:1506:56:15copy-sql:
06:56:15Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
06:56:2106:56:21copy-server:
06:56:21 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
06:56:2106:56:21copy-client:
06:56:21Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
06:56:23 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
06:56:2306:56:23update-version:
06:56:23Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
06:56:2306:56:23create-workdirs:
06:56:23Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
06:56:23Created dir: /home/omero/workspace/OMERO-build/src/dist/var
06:56:2306:56:23copy-luts:
06:56:23Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
06:56:23Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
06:56:2306:56:23test-compile:
06:56:23:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:56:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
06:56:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:56:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
06:56:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:56:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
06:56:23Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
06:56:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:56:2306:56:23testng-init:
06:56:23:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:56:23:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:56:2706:56:26,924 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
06:56:2706:56:26,927 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7c698549 - No custom configurators were discovered as a service.
06:56:2706:56:26,927 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7c698549 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
06:56:2706:56:26,930 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7c698549 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
06:56:2706:56:26,931 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
06:56:2706:56:26,931 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
06:56:2706:56:26,932 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7c698549 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
06:56:2706:56:26,932 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7c698549 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
06:56:2706:56:26,934 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7c698549 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
06:56:2706:56:26,934 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
06:56:2706:56:26,934 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
06:56:2706:56:26,935 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@8f7544a - Resource [logback.xml] occurs multiple times on the classpath.
06:56:2706:56:26,935 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@8f7544a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
06:56:2706:56:26,935 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@8f7544a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
06:56:2706:56:27,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
06:56:2706:56:27,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
06:56:2706:56:27,164 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
06:56:2706:56:27,166 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@151cbba4 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
06:56:2706:56:27,166 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@151cbba4 - Please move "immediateFlush" property into the enclosing appender.
06:56:2706:56:27,228 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@151cbba4 - Setting the "immediateFlush" property of the enclosing appender to true
06:56:2706:56:27,229 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
06:56:2706:56:27,229 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
06:56:2706:56:27,229 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
06:56:2706:56:27,229 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
06:56:2706:56:27,229 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
06:56:2706:56:27,229 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
06:56:2706:56:27,230 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3729cdaf - End of configuration.
06:56:2706:56:27,232 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@75a45ce - Registering current configuration as safe fallback point
06:56:2706:56:27,232 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7c698549 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 298 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
06:56:2706:56:27lifecycle.test-compile:
06:56:27Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
06:56:27Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
06:56:27warning: [options] bootstrap class path not set in conjunction with -source 8
06:56:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:56:28import omero.grid.RawAccessRequest;
06:56:28 ^
06:56:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:56:28import omero.grid.RawAccessRequest;
06:56:28 ^
06:56:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:56:29import omero.grid.RawAccessRequest;
06:56:29 ^
06:56:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
06:56:29import omero.model.ImportJob;
06:56:29 ^
06:56:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
06:56:29import omero.model.ImportJobI;
06:56:29 ^
06:56:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
06:56:29 IObject link = (IObject) linkClass.newInstance();
06:56:29 ^
06:56:29 where T is a type-variable:
06:56:29 T extends Object declared in class Class
06:56:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
06:56:30 T copy = (T) obj.getClass().newInstance();
06:56:30 ^
06:56:30 where T is a type-variable:
06:56:30 T extends Object declared in class Class
06:56:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:56:30 RawAccessRequest raw = new RawAccessRequest();
06:56:30 ^
06:56:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:56:30 RawAccessRequest raw = new RawAccessRequest();
06:56:30 ^
06:56:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
06:56:30 raw.repoUuid = legacy.root().getHash().getValue();
06:56:30 ^
06:56:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
06:56:30 raw.command = "rm";
06:56:30 ^
06:56:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
06:56:30 raw.args = Arrays.asList(path);
06:56:30 ^
06:56:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
06:56:30 final IObject link = linkClass.newInstance();
06:56:30 ^
06:56:30 where T is a type-variable:
06:56:30 T extends Object declared in class Class
06:56:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
06:56:30 originalLink.setChild(annotationClass.newInstance());
06:56:30 ^
06:56:30 where T is a type-variable:
06:56:30 T extends Object declared in class Class
06:56:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
06:56:30 RoiResult r = svc.findByImage(id, new RoiOptions());
06:56:30 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:56:31 final RawAccessRequest request = new RawAccessRequest();
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:56:31 final RawAccessRequest request = new RawAccessRequest();
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
06:56:31 request.repoUuid = repo.root().getHash().getValue();
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
06:56:31 request.command = "exists";
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
06:56:31 request.args = Collections.singletonList(dirPath);
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:56:31 final RawAccessRequest request = new RawAccessRequest();
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
06:56:31 final RawAccessRequest request = new RawAccessRequest();
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
06:56:31 request.repoUuid = repo.root().getHash().getValue();
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
06:56:31 request.command = "exists";
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
06:56:31 request.args = Collections.singletonList(dirName);
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
06:56:31 final ImportJob importJob = new ImportJobI();
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
06:56:31 final ImportJob importJob = new ImportJobI();
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
06:56:31 importJob.setImageName(omero.rtypes.rstring(name));
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
06:56:31 importJob.setImageDescription(omero.rtypes.rstring(desc));
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
06:56:31 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
06:56:31 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
06:56:31 final String savedName = sent.getImageName().getValue().toString();
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
06:56:31 final String savedDesc = sent.getImageDescription().getValue().toString();
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
06:56:31 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
06:56:31 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
06:56:31 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
06:56:31 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
06:56:31 RoiResult r = svc.findByImage(image.getId().getValue(),
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:56:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:56:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:56:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:56:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
06:56:31 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:56:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
06:56:31 table = svc.getTable(f.getId().getValue());
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
06:56:31 RoiResult r = svc.findByImage(image.getId().getValue(),
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
06:56:31 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
06:56:31 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
06:56:31 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
06:56:31 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
06:56:31 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
06:56:31 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
06:56:31 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
06:56:31 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
06:56:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
06:56:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
06:56:31 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
06:56:31 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
06:56:31 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
06:56:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
06:56:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
06:56:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
06:56:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
06:56:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
06:56:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
06:56:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
06:56:31 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
06:56:31 svc.getShapeStatsRestricted(
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
06:56:31 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:56:31 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:56:31 request.typesToIgnore = Collections.singletonList("TagAnnotation");
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:56:31 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:56:31 request.typesToIgnore = Collections.singletonList("Annotation");
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
06:56:31 request.typesToIgnore = Collections.singletonList("Annotation");
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:56:31 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:56:31 p2.setRelatedTo(p1);
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:56:31 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:56:31 pixels1.setRelatedTo(pixels2);
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:56:31 Pixels pixels = pixels1.getRelatedTo();
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:56:31 Assert.assertNull(pixels1.getRelatedTo());
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
06:56:31 pixels1.setRelatedTo(pixels2);
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:56:31 Pixels pixels = pixels1.getRelatedTo();
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
06:56:31 Assert.assertNull(pixels1.getRelatedTo());
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:56:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:56:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:56:31 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
06:56:31 ^
06:56:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
06:56:31 l = svc.getRoiMeasurements(image.getId().getValue(), options);
06:56:31 ^
06:56:32Note: Some input files use unchecked or unsafe operations.
06:56:32Note: Recompile with -Xlint:unchecked for details.
06:56:3288 warnings
06:56:32Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1500050831.tmp
06:56:32Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
06:56:32:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:56:32:: delivering :: omero#OmeroJava-test;working@bdaf9f08f5d1 :: 5.6.3-513-ae72da0f50-ice36 :: integration :: Fri Oct 18 06:56:23 UTC 2024
06:56:32 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
06:56:32:: publishing :: omero#OmeroJava-test
06:56:32 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-513-ae72da0f50-ice36.jar
06:56:32 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-513-ae72da0f50-ice36.xml
06:56:3206:56:32build-eclipse:
06:56:32No sub-builds to iterate on
06:56:32Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
06:56:3206:56:32retrieve:
06:56:32:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
06:56:32:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
06:56:3406:56:34prepare:
06:56:34Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
06:56:3606:56:36release-clients:
06:56:36Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-513-ae72da0f50-ice36.zip
06:56:4106:56:41release-zip:
06:56:41Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-513-ae72da0f50-ice36.zip
06:56:5306:56:53BUILD SUCCESSFUL
06:56:53Total time: 1 minute 19 seconds
06:56:53++ '[' -d .git ']'
06:56:53++ python3 ./build.py release-src
06:56:53OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
06:56:53Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
06:56:5406:56:54release-src-git:
06:56:54Releasing openmicroscopy-5.6.3-513-ae72da0f50-ice36
06:56:55 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-513-ae72da0f50-ice36.zip
06:56:55 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-513-ae72da0f50-ice36-base.zip
06:56:5706:56:57BUILD SUCCESSFUL
06:56:57Total time: 3 seconds
06:56:57++ echo BUILD_NUMBER=208
06:56:57++ echo OMERO_BRANCH=merge_ci
06:56:57++ git_info
06:56:57+++ git rev-parse HEAD
06:56:57++ HEAD=ae72da0f5076a9344298132624261ab39183a2af
06:56:57++ git log --max-count=1 ae72da0f5076a9344298132624261ab39183a2af
06:56:57++ env
06:56:57++ sort
06:56:57Archiving artifacts
06:57:24Finished: SUCCESS
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