00:34:56Started by upstream project "Trigger" build number 29100:34:56originally caused by:
00:34:56 Started by timer
00:34:56Running as SYSTEM
00:34:56Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:34:56The recommended git tool is: NONE
00:34:56No credentials specified
00:34:56 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:34:56Fetching changes from the remote Git repository
00:34:56 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:34:56Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:34:56 > git --version # timeout=10
00:34:56 > git --version # 'git version 2.43.5'
00:34:56 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:35:00 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:35:00Checking out Revision 50ca98ad6a1e8696819b49f23d40d29b9e73572e (origin/merge_ci)
00:35:00 > git config core.sparsecheckout # timeout=10
00:35:00 > git checkout -f 50ca98ad6a1e8696819b49f23d40d29b9e73572e # timeout=10
00:35:00Commit message: "Add version.properties to etc/omero.properties"
00:35:00 > git rev-list --no-walk 448f3d2cd5a9b0643d514061f93f9c7feeb6703c # timeout=10
00:35:00Cleaning workspace
00:35:00 > git rev-parse --verify HEAD # timeout=10
00:35:00Resetting working tree
00:35:00 > git reset --hard # timeout=10
00:35:00 > git clean -fdx # timeout=10
00:35:00Copied 6 artifacts from "OMERO-python-superbuild-build" build number 24200:35:00[OMERO-build] $ /bin/bash -xe /tmp/jenkins7494568275465811895.sh
00:35:00+ mv omero-scripts/dist/omero_scripts-5.8.4.dev0.tar.gz .
00:35:00+ cd src
00:35:00+ export OMERO_BRANCH=merge_ci
00:35:00+ OMERO_BRANCH=merge_ci
00:35:00+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:35:00+ source /home/omero/settings.env
00:35:00++ OMERO_DB_HOST=pg
00:35:00++ OMERO_DB_USER=postgres
00:35:00++ OMERO_DB_PASS=
00:35:00++ OMERO_ROOT_PASS=omero
00:35:00++ OMERO_DATA_DIR=/OMERO
00:35:00++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:35:00+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:35:03+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl00:35:05Collecting zeroc-ice==3.6.5
00:35:05 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
00:35:07WARNING: You are using pip version 21.2.3; however, version 24.3.1 is available.
00:35:07You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:35:07+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
00:35:07Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (75.6.0)
00:35:08Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.5)
00:35:08Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
00:35:08Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
00:35:08Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
00:35:08Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
00:35:08Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
00:35:08Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
00:35:08Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
00:35:08Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
00:35:08Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
00:35:08Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
00:35:08Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
00:35:08Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
00:35:08WARNING: You are using pip version 21.2.3; however, version 24.3.1 is available.
00:35:08You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:35:08+ source docs/hudson/OMERO.sh
00:35:08++ set -e
00:35:08++ set -u
00:35:08++ set -x
00:35:08++ source docs/hudson/functions.sh
00:35:08++ echo Building merge_ci
00:35:08Building merge_ci
00:35:08++ python3 ./build.py build-dev release-all
00:35:09OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:35:10Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:35:1100:35:11check-ivy:
00:35:11Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:35:11Created dir: /home/omero/workspace/OMERO-build/src/target
00:35:11:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:11:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:1300:35:13build-scons:
00:35:13Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:35:13No sub-builds to iterate on
00:35:14Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:35:1400:35:14buildlist:
00:35:14:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:14:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:1400:35:14clean:
00:35:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:1400:35:14python-clean:
00:35:14WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:14/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-529-50ca98ad6a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:14 warnings.warn(
00:35:14running clean
00:35:15Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:35:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:35:1500:35:15python-clean:
00:35:15WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:15/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-529-50ca98ad6a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:15 warnings.warn(
00:35:15running clean
00:35:15Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:35:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:35:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:1600:35:16python-clean:
00:35:16WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:16/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-529-50ca98ad6a-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:16 warnings.warn(
00:35:16running clean
00:35:16Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:35:16Deleting directory /home/omero/workspace/OMERO-build/src/target
00:35:1600:35:16build-scons:
00:35:16Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:35:1600:35:16build:
00:35:16No sub-builds to iterate on
00:35:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:35:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:35:1600:35:16tools-init:
00:35:16no-op
00:35:1600:35:16retrieve:
00:35:16:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:16:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:17WARNING: An illegal reflective access operation has occurred
00:35:17WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:35:17WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:35:17WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:35:17WARNING: All illegal access operations will be denied in a future release
00:35:4800:35:48prepare:
00:35:48Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:35:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:35:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:35:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:35:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:35:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:4800:35:48pre-compile:
00:35:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:4800:35:48compile:
00:35:48no-op
00:35:4800:35:48package:
00:35:48Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:35:4900:35:49install:
00:35:49:: delivering :: omero#omero_client;working@bdaf9f08f5d1 :: 5.6.3-529-50ca98ad6a-ice36 :: integration :: Tue Nov 26 00:35:16 UTC 2024
00:35:49 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:35:49:: publishing :: omero#omero_client
00:35:49 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-529-50ca98ad6a-ice36/omero_client-5.6.3-529-50ca98ad6a-ice36.jar
00:35:49 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-529-50ca98ad6a-ice36/omero_client-5.6.3-529-50ca98ad6a-ice36.xml
00:35:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:4900:35:49retrieve:
00:35:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:50Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:35:5000:35:50dist:
00:35:50Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:35:50Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:35:50Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:35:50Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:35:50Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:35:50Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
00:35:50Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:35:50Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:35:50Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:35:5000:35:50copy-licenses:
00:35:50Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:35:50Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:35:50Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:35:5100:35:51copy-history:
00:35:51Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:35:5100:35:51copy-etc:
00:35:51Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:35:52Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:35:5200:35:52copy-sql:
00:35:52Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:35:5900:35:59copy-server:
00:35:59 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:35:5900:35:59copy-client:
00:35:59Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:36:00 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:36:0000:36:00update-version:
00:36:00Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:36:0000:36:00create-workdirs:
00:36:00Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:36:00Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:36:0000:36:00copy-luts:
00:36:00Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:36:00Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:36:0100:36:01test-compile:
00:36:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:36:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:36:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:36:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:36:01Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:36:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:36:0100:36:01testng-init:
00:36:01:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:0500:36:04,754 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
00:36:0500:36:04,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@622ae2ba - No custom configurators were discovered as a service.
00:36:0500:36:04,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@622ae2ba - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:36:0500:36:04,760 |-INFO in ch.qos.logback.classic.util.ContextInitializer@622ae2ba - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:36:0500:36:04,760 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:36:0500:36:04,760 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:36:0500:36:04,761 |-INFO in ch.qos.logback.classic.util.ContextInitializer@622ae2ba - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:36:0500:36:04,761 |-INFO in ch.qos.logback.classic.util.ContextInitializer@622ae2ba - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:36:0500:36:04,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@622ae2ba - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:36:0500:36:04,763 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:36:0500:36:04,763 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:36:0500:36:04,764 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@45ee48e7 - Resource [logback.xml] occurs multiple times on the classpath.
00:36:0500:36:04,764 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@45ee48e7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:36:0500:36:04,764 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@45ee48e7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:36:0500:36:04,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:36:0500:36:04,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:36:0500:36:04,996 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:36:0500:36:04,997 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2170c3ed - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:36:0500:36:04,997 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2170c3ed - Please move "immediateFlush" property into the enclosing appender.
00:36:0500:36:05,059 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2170c3ed - Setting the "immediateFlush" property of the enclosing appender to true
00:36:0500:36:05,060 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:36:0500:36:05,060 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:36:0500:36:05,060 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:36:0500:36:05,060 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:36:0500:36:05,060 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:36:0500:36:05,060 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:36:0500:36:05,061 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@57e3a1b8 - End of configuration.
00:36:0500:36:05,063 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@62e9a6cc - Registering current configuration as safe fallback point
00:36:0500:36:05,063 |-INFO in ch.qos.logback.classic.util.ContextInitializer@622ae2ba - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 300 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:36:0500:36:05lifecycle.test-compile:
00:36:05Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:36:05Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:36:05warning: [options] bootstrap class path not set in conjunction with -source 8
00:36:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:08import omero.grid.RawAccessRequest;
00:36:08 ^
00:36:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:09import omero.grid.RawAccessRequest;
00:36:09 ^
00:36:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:09import omero.grid.RawAccessRequest;
00:36:09 ^
00:36:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:09import omero.model.ImportJob;
00:36:09 ^
00:36:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:36:09import omero.model.ImportJobI;
00:36:09 ^
00:36:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:36:09 IObject link = (IObject) linkClass.newInstance();
00:36:09 ^
00:36:09 where T is a type-variable:
00:36:09 T extends Object declared in class Class
00:36:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:36:10 T copy = (T) obj.getClass().newInstance();
00:36:10 ^
00:36:10 where T is a type-variable:
00:36:10 T extends Object declared in class Class
00:36:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:10 RawAccessRequest raw = new RawAccessRequest();
00:36:10 ^
00:36:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:10 RawAccessRequest raw = new RawAccessRequest();
00:36:10 ^
00:36:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:10 raw.repoUuid = legacy.root().getHash().getValue();
00:36:10 ^
00:36:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:10 raw.command = "rm";
00:36:10 ^
00:36:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:10 raw.args = Arrays.asList(path);
00:36:10 ^
00:36:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:36:10 final IObject link = linkClass.newInstance();
00:36:10 ^
00:36:10 where T is a type-variable:
00:36:10 T extends Object declared in class Class
00:36:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:36:10 originalLink.setChild(annotationClass.newInstance());
00:36:10 ^
00:36:10 where T is a type-variable:
00:36:10 T extends Object declared in class Class
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:11 RoiResult r = svc.findByImage(id, new RoiOptions());
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:11 final RawAccessRequest request = new RawAccessRequest();
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:11 final RawAccessRequest request = new RawAccessRequest();
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:11 request.repoUuid = repo.root().getHash().getValue();
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:11 request.command = "exists";
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:11 request.args = Collections.singletonList(dirPath);
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:11 final RawAccessRequest request = new RawAccessRequest();
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:36:11 final RawAccessRequest request = new RawAccessRequest();
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:36:11 request.repoUuid = repo.root().getHash().getValue();
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:36:11 request.command = "exists";
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:36:11 request.args = Collections.singletonList(dirName);
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:11 final ImportJob importJob = new ImportJobI();
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:36:11 final ImportJob importJob = new ImportJobI();
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:36:11 importJob.setImageName(omero.rtypes.rstring(name));
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:36:11 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:11 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:11 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:36:11 final String savedName = sent.getImageName().getValue().toString();
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:36:11 final String savedDesc = sent.getImageDescription().getValue().toString();
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:11 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:36:11 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:36:11 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:36:11 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:11 RoiResult r = svc.findByImage(image.getId().getValue(),
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:11 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:11 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:11 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:11 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:36:11 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:11 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:36:11 table = svc.getTable(f.getId().getValue());
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:36:11 RoiResult r = svc.findByImage(image.getId().getValue(),
00:36:11 ^
00:36:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:36:11 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:36:11 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:36:12 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:36:12 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:36:12 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:12 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:12 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:12 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:12 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:36:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:12 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:12 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:36:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:36:12 svc.getShapeStatsRestricted(
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:36:12 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:12 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:12 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:12 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:12 request.typesToIgnore = Collections.singletonList("Annotation");
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:36:12 request.typesToIgnore = Collections.singletonList("Annotation");
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:12 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:12 p2.setRelatedTo(p1);
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:12 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:12 pixels1.setRelatedTo(pixels2);
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:12 Pixels pixels = pixels1.getRelatedTo();
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:12 Assert.assertNull(pixels1.getRelatedTo());
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:36:12 pixels1.setRelatedTo(pixels2);
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:12 Pixels pixels = pixels1.getRelatedTo();
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:36:12 Assert.assertNull(pixels1.getRelatedTo());
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:12 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:36:12 ^
00:36:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:36:12 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:36:12 ^
00:36:12Note: Some input files use unchecked or unsafe operations.
00:36:12Note: Recompile with -Xlint:unchecked for details.
00:36:1288 warnings
00:36:12Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2093930361.tmp
00:36:12Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:36:12:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:12:: delivering :: omero#OmeroJava-test;working@bdaf9f08f5d1 :: 5.6.3-529-50ca98ad6a-ice36 :: integration :: Tue Nov 26 00:36:01 UTC 2024
00:36:12 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:36:12:: publishing :: omero#OmeroJava-test
00:36:12 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-529-50ca98ad6a-ice36.jar
00:36:12 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-529-50ca98ad6a-ice36.xml
00:36:1200:36:12build-eclipse:
00:36:12No sub-builds to iterate on
00:36:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:36:1300:36:13retrieve:
00:36:13:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:36:13:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:36:1500:36:15prepare:
00:36:15Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:36:1600:36:16release-clients:
00:36:16Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-529-50ca98ad6a-ice36.zip
00:36:2200:36:22release-zip:
00:36:22Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-529-50ca98ad6a-ice36.zip
00:36:3300:36:33BUILD SUCCESSFUL
00:36:33Total time: 1 minute 23 seconds
00:36:33++ '[' -d .git ']'
00:36:33++ python3 ./build.py release-src
00:36:33OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:36:33Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:36:3400:36:34release-src-git:
00:36:34Releasing openmicroscopy-5.6.3-529-50ca98ad6a-ice36
00:36:36 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-529-50ca98ad6a-ice36.zip
00:36:36 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-529-50ca98ad6a-ice36-base.zip
00:36:3800:36:38BUILD SUCCESSFUL
00:36:38Total time: 4 seconds
00:36:38++ echo BUILD_NUMBER=246
00:36:38++ echo OMERO_BRANCH=merge_ci
00:36:38++ git_info
00:36:38+++ git rev-parse HEAD
00:36:38++ HEAD=50ca98ad6a1e8696819b49f23d40d29b9e73572e
00:36:38++ git log --max-count=1 50ca98ad6a1e8696819b49f23d40d29b9e73572e
00:36:38++ env
00:36:38++ sort
00:36:38Archiving artifacts
00:37:06Finished: SUCCESS
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