01:31:59Started by upstream project "Trigger" build number 33601:31:59originally caused by:
01:31:59 Started by timer
01:31:59Running as SYSTEM
01:31:59Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:31:59The recommended git tool is: NONE
01:31:59No credentials specified
01:31:59 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:31:59Fetching changes from the remote Git repository
01:31:59 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:31:59Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:31:59 > git --version # timeout=10
01:31:59 > git --version # 'git version 2.43.5'
01:31:59 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:32:05 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:32:05Checking out Revision d8e0389157492ddb9d5cb287d00283d0aa9496ff (origin/merge_ci)
01:32:05 > git config core.sparsecheckout # timeout=10
01:32:05 > git checkout -f d8e0389157492ddb9d5cb287d00283d0aa9496ff # timeout=10
01:32:05Commit message: "Add version.properties to etc/omero.properties"
01:32:05 > git rev-list --no-walk 28f0171748e95344f2b9a026ebaaa0fd4fdaea74 # timeout=10
01:32:05Cleaning workspace
01:32:05 > git rev-parse --verify HEAD # timeout=10
01:32:05Resetting working tree
01:32:05 > git reset --hard # timeout=10
01:32:05 > git clean -fdx # timeout=10
01:32:05Copied 6 artifacts from "OMERO-python-superbuild-build" build number 28301:32:05[OMERO-build] $ /bin/bash -xe /tmp/jenkins15066091295974360004.sh
01:32:05+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
01:32:05+ cd src
01:32:05+ export OMERO_BRANCH=merge_ci
01:32:05+ OMERO_BRANCH=merge_ci
01:32:05+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:32:05+ source /home/omero/settings.env
01:32:05++ OMERO_DB_HOST=pg
01:32:05++ OMERO_DB_USER=postgres
01:32:05++ OMERO_DB_PASS=
01:32:05++ OMERO_ROOT_PASS=omero
01:32:05++ OMERO_DATA_DIR=/OMERO
01:32:05++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:32:05+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:32:08+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl01:32:10Collecting zeroc-ice==3.6.5
01:32:11 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
01:32:13WARNING: You are using pip version 21.2.3; however, version 24.3.1 is available.
01:32:13You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
01:32:13+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
01:32:13Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (75.7.0)
01:32:14Collecting setuptools
01:32:14 Using cached setuptools-75.8.0-py3-none-any.whl (1.2 MB)
01:32:14Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.5)
01:32:14Collecting omero-py
01:32:14 Downloading omero_py-5.19.6-py3-none-any.whl (2.8 MB)
01:32:15Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
01:32:15Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
01:32:15Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
01:32:15Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
01:32:15Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
01:32:15Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
01:32:15Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
01:32:15Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
01:32:15Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
01:32:15Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
01:32:15Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
01:32:15Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
01:32:15Installing collected packages: setuptools, omero-py
01:32:15 Attempting uninstall: setuptools
01:32:15 Found existing installation: setuptools 75.7.0
01:32:15 Uninstalling setuptools-75.7.0:
01:32:15 Successfully uninstalled setuptools-75.7.0
01:32:16 Attempting uninstall: omero-py
01:32:16 Found existing installation: omero-py 5.19.5
01:32:17 Uninstalling omero-py-5.19.5:
01:32:19 Successfully uninstalled omero-py-5.19.5
01:32:22Successfully installed omero-py-5.19.6 setuptools-75.8.0
01:32:22WARNING: You are using pip version 21.2.3; however, version 24.3.1 is available.
01:32:22You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
01:32:22+ source docs/hudson/OMERO.sh
01:32:22++ set -e
01:32:22++ set -u
01:32:22++ set -x
01:32:22++ source docs/hudson/functions.sh
01:32:22++ echo Building merge_ci
01:32:22Building merge_ci
01:32:22++ python3 ./build.py build-dev release-all
01:32:22OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
01:32:22Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:32:2401:32:24check-ivy:
01:32:24Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:32:24Created dir: /home/omero/workspace/OMERO-build/src/target
01:32:25:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:32:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:32:2601:32:26build-scons:
01:32:26Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:32:27No sub-builds to iterate on
01:32:27Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:32:2801:32:28buildlist:
01:32:28:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:32:28:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:32:2801:32:28clean:
01:32:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:32:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:32:2801:32:28python-clean:
01:32:28WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:32:28/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-531-d8e0389157-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:32:28 warnings.warn(
01:32:28running clean
01:32:28Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:32:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:32:2801:32:28python-clean:
01:32:28WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:32:28/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-531-d8e0389157-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:32:28 warnings.warn(
01:32:28running clean
01:32:29Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:32:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:32:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:32:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:32:2901:32:29python-clean:
01:32:29WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:32:29/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-531-d8e0389157-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:32:29 warnings.warn(
01:32:29running clean
01:32:29Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:32:29Deleting directory /home/omero/workspace/OMERO-build/src/target
01:32:2901:32:29build-scons:
01:32:29Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:32:2901:32:29build:
01:32:29No sub-builds to iterate on
01:32:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:32:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:32:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:32:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:32:2901:32:29tools-init:
01:32:29no-op
01:32:2901:32:29retrieve:
01:32:29:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:32:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:32:30WARNING: An illegal reflective access operation has occurred
01:32:30WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
01:32:30WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
01:32:30WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
01:32:30WARNING: All illegal access operations will be denied in a future release
01:32:4801:32:48prepare:
01:32:48Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:32:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:32:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:32:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:32:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:32:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:32:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:32:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:32:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:32:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:32:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:32:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:32:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:32:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:32:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:32:4801:32:48pre-compile:
01:32:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:32:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:32:49Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:32:49Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:32:49Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:32:4901:32:49compile:
01:32:49no-op
01:32:4901:32:49package:
01:32:49Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:32:4901:32:49install:
01:32:49:: delivering :: omero#omero_client;working@bdaf9f08f5d1 :: 5.6.3-531-d8e0389157-ice36 :: integration :: Fri Jan 10 01:32:29 UTC 2025
01:32:49 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:32:49:: publishing :: omero#omero_client
01:32:49 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-531-d8e0389157-ice36/omero_client-5.6.3-531-d8e0389157-ice36.jar
01:32:49 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-531-d8e0389157-ice36/omero_client-5.6.3-531-d8e0389157-ice36.xml
01:32:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:32:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:32:5001:32:50retrieve:
01:32:50:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:32:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:32:50Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:32:5001:32:50dist:
01:32:50Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:32:50Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:32:50Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:32:50Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:32:50Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:32:50Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:32:50Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:32:50Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:32:50Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:32:5101:32:51copy-licenses:
01:32:51Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:32:51Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:32:51Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:32:5101:32:51copy-history:
01:32:51Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:32:5101:32:51copy-etc:
01:32:51Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:32:52Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:32:5201:32:52copy-sql:
01:32:52Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:33:0301:33:03copy-server:
01:33:03 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
01:33:0301:33:03copy-client:
01:33:03Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:33:04 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
01:33:0401:33:04update-version:
01:33:04Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:33:0401:33:04create-workdirs:
01:33:04Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:33:04Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:33:0401:33:04copy-luts:
01:33:04Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:33:04Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:33:0501:33:05test-compile:
01:33:05:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:33:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:33:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:33:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:33:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:33:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:33:05Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:33:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:33:0601:33:06testng-init:
01:33:06:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:33:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:33:1001:33:09,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
01:33:1001:33:09,906 |-INFO in ch.qos.logback.classic.util.ContextInitializer@17acd4c5 - No custom configurators were discovered as a service.
01:33:1001:33:09,906 |-INFO in ch.qos.logback.classic.util.ContextInitializer@17acd4c5 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:33:1001:33:09,909 |-INFO in ch.qos.logback.classic.util.ContextInitializer@17acd4c5 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:33:1001:33:09,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:33:1001:33:09,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:33:1001:33:09,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@17acd4c5 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:33:1001:33:09,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@17acd4c5 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:33:1001:33:09,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@17acd4c5 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:33:1001:33:09,913 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:33:1001:33:09,913 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:33:1001:33:09,914 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@591ad4b3 - Resource [logback.xml] occurs multiple times on the classpath.
01:33:1001:33:09,914 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@591ad4b3 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:33:1001:33:09,914 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@591ad4b3 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:33:1001:33:10,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:33:1001:33:10,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:33:1001:33:10,149 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:33:1001:33:10,151 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@70bfc7d5 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:33:1001:33:10,151 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@70bfc7d5 - Please move "immediateFlush" property into the enclosing appender.
01:33:1001:33:10,215 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@70bfc7d5 - Setting the "immediateFlush" property of the enclosing appender to true
01:33:1001:33:10,216 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:33:1001:33:10,216 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:33:1001:33:10,216 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:33:1001:33:10,216 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:33:1001:33:10,216 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:33:1001:33:10,216 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:33:1001:33:10,218 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2ea6687b - End of configuration.
01:33:1001:33:10,220 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5fdd9b96 - Registering current configuration as safe fallback point
01:33:1001:33:10,220 |-INFO in ch.qos.logback.classic.util.ContextInitializer@17acd4c5 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 308 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:33:1001:33:10lifecycle.test-compile:
01:33:10Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:33:10Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:33:10warning: [options] bootstrap class path not set in conjunction with -source 8
01:33:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:33:15import omero.grid.RawAccessRequest;
01:33:15 ^
01:33:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:33:15import omero.grid.RawAccessRequest;
01:33:15 ^
01:33:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:33:15import omero.grid.RawAccessRequest;
01:33:15 ^
01:33:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:33:15import omero.model.ImportJob;
01:33:15 ^
01:33:15/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:33:15import omero.model.ImportJobI;
01:33:15 ^
01:33:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:33:16 IObject link = (IObject) linkClass.newInstance();
01:33:16 ^
01:33:16 where T is a type-variable:
01:33:16 T extends Object declared in class Class
01:33:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:33:16 T copy = (T) obj.getClass().newInstance();
01:33:16 ^
01:33:16 where T is a type-variable:
01:33:16 T extends Object declared in class Class
01:33:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:33:16 RawAccessRequest raw = new RawAccessRequest();
01:33:16 ^
01:33:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:33:16 RawAccessRequest raw = new RawAccessRequest();
01:33:16 ^
01:33:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:33:16 raw.repoUuid = legacy.root().getHash().getValue();
01:33:16 ^
01:33:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:33:16 raw.command = "rm";
01:33:16 ^
01:33:16/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:33:16 raw.args = Arrays.asList(path);
01:33:16 ^
01:33:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:33:17 final IObject link = linkClass.newInstance();
01:33:17 ^
01:33:17 where T is a type-variable:
01:33:17 T extends Object declared in class Class
01:33:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:33:17 originalLink.setChild(annotationClass.newInstance());
01:33:17 ^
01:33:17 where T is a type-variable:
01:33:17 T extends Object declared in class Class
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:33:18 RoiResult r = svc.findByImage(id, new RoiOptions());
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:33:18 final RawAccessRequest request = new RawAccessRequest();
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:33:18 final RawAccessRequest request = new RawAccessRequest();
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:33:18 request.repoUuid = repo.root().getHash().getValue();
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:33:18 request.command = "exists";
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:33:18 request.args = Collections.singletonList(dirPath);
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:33:18 final RawAccessRequest request = new RawAccessRequest();
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:33:18 final RawAccessRequest request = new RawAccessRequest();
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:33:18 request.repoUuid = repo.root().getHash().getValue();
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:33:18 request.command = "exists";
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:33:18 request.args = Collections.singletonList(dirName);
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:33:18 final ImportJob importJob = new ImportJobI();
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:33:18 final ImportJob importJob = new ImportJobI();
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:33:18 importJob.setImageName(omero.rtypes.rstring(name));
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:33:18 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:33:18 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:33:18 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:33:18 final String savedName = sent.getImageName().getValue().toString();
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:33:18 final String savedDesc = sent.getImageDescription().getValue().toString();
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:33:18 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:33:18 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:33:18 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:33:18 ^
01:33:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:33:18 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:33:18 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:33:19 RoiResult r = svc.findByImage(image.getId().getValue(),
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:33:19 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:33:19 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:33:19 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:33:19 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:33:19 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:33:19 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:33:19 table = svc.getTable(f.getId().getValue());
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:33:19 RoiResult r = svc.findByImage(image.getId().getValue(),
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:33:19 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:33:19 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:33:19 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:33:19 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:33:19 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:33:19 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:33:19 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:33:19 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
01:33:19 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:33:19 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:33:19 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:33:19 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:33:19 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:33:19 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:33:19 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:33:19 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:33:19 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:33:19 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:33:19 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:33:19 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:33:19 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:33:19 svc.getShapeStatsRestricted(
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:33:19 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:33:19 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:33:19 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:33:19 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:33:19 request.typesToIgnore = Collections.singletonList("Annotation");
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:33:19 request.typesToIgnore = Collections.singletonList("Annotation");
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:33:19 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:33:19 p2.setRelatedTo(p1);
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:33:19 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:33:19 pixels1.setRelatedTo(pixels2);
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:33:19 Pixels pixels = pixels1.getRelatedTo();
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:33:19 Assert.assertNull(pixels1.getRelatedTo());
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:33:19 pixels1.setRelatedTo(pixels2);
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:33:19 Pixels pixels = pixels1.getRelatedTo();
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:33:19 Assert.assertNull(pixels1.getRelatedTo());
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:33:19 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:33:19 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:33:19 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:33:19 ^
01:33:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:33:19 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:33:19 ^
01:33:19Note: Some input files use unchecked or unsafe operations.
01:33:19Note: Recompile with -Xlint:unchecked for details.
01:33:1988 warnings
01:33:19Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_93799848.tmp
01:33:19Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:33:19:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:33:19:: delivering :: omero#OmeroJava-test;working@bdaf9f08f5d1 :: 5.6.3-531-d8e0389157-ice36 :: integration :: Fri Jan 10 01:33:05 UTC 2025
01:33:19 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:33:19:: publishing :: omero#OmeroJava-test
01:33:19 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-531-d8e0389157-ice36.jar
01:33:19 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-531-d8e0389157-ice36.xml
01:33:1901:33:19build-eclipse:
01:33:19No sub-builds to iterate on
01:33:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:33:2001:33:20retrieve:
01:33:20:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:33:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:33:2201:33:22prepare:
01:33:22Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:33:2301:33:23release-clients:
01:33:23Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-531-d8e0389157-ice36.zip
01:33:2901:33:29release-zip:
01:33:29Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-531-d8e0389157-ice36.zip
01:33:4101:33:41BUILD SUCCESSFUL
01:33:41Total time: 1 minute 18 seconds
01:33:41++ '[' -d .git ']'
01:33:41++ python3 ./build.py release-src
01:33:41OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
01:33:41Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:33:4201:33:42release-src-git:
01:33:42Releasing openmicroscopy-5.6.3-531-d8e0389157-ice36
01:33:44 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-531-d8e0389157-ice36.zip
01:33:44 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-531-d8e0389157-ice36-base.zip
01:33:4601:33:46BUILD SUCCESSFUL
01:33:46Total time: 4 seconds
01:33:46++ echo BUILD_NUMBER=287
01:33:46++ echo OMERO_BRANCH=merge_ci
01:33:46++ git_info
01:33:46+++ git rev-parse HEAD
01:33:46++ HEAD=d8e0389157492ddb9d5cb287d00283d0aa9496ff
01:33:46++ git log --max-count=1 d8e0389157492ddb9d5cb287d00283d0aa9496ff
01:33:46++ env
01:33:46++ sort
01:33:46Archiving artifacts
01:34:14Finished: SUCCESS
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