00:39:44Started by upstream project "Trigger" build number 5900:39:44originally caused by:
00:39:44 Started by timer
00:39:44Running as SYSTEM
00:39:44Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:39:44The recommended git tool is: NONE
00:39:44No credentials specified
00:39:44 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:39:44Fetching changes from the remote Git repository
00:39:44 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:39:44Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:39:44 > git --version # timeout=10
00:39:44 > git --version # 'git version 2.47.3'
00:39:44 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:39:46 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:39:46Checking out Revision 9f1be4320fce49c48c554f684eaace5ef203dde6 (origin/merge_ci)
00:39:46 > git config core.sparsecheckout # timeout=10
00:39:46 > git checkout -f 9f1be4320fce49c48c554f684eaace5ef203dde6 # timeout=10
00:39:47Commit message: "Add version.properties to etc/omero.properties"
00:39:47 > git rev-list --no-walk cd449a6a1eedef98d442704ae4426ff67abdda4f # timeout=10
00:39:47Cleaning workspace
00:39:47 > git rev-parse --verify HEAD # timeout=10
00:39:47Resetting working tree
00:39:47 > git reset --hard # timeout=10
00:39:47 > git clean -fdx # timeout=10
00:39:47Copied 6 artifacts from "OMERO-python-superbuild-build" build number 3200:39:47[OMERO-build] $ /bin/bash -xe /tmp/jenkins16142178196307759773.sh
00:39:47+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
00:39:47+ cd src
00:39:47+ export OMERO_BRANCH=merge_ci
00:39:47+ OMERO_BRANCH=merge_ci
00:39:47+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:39:47+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:39:48+ source /home/omero/settings.env
00:39:48++ OMERO_DB_HOST=pg
00:39:48++ OMERO_DB_USER=postgres
00:39:48++ OMERO_DB_PASS=
00:39:48++ OMERO_ROOT_PASS=omero
00:39:48++ OMERO_DATA_DIR=/OMERO
00:39:48++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:39:48+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:39:51+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:39:51Collecting zeroc-ice==3.6.5
00:39:52 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:39:53 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.0 MB/s eta 0:00:00
00:39:54Installing collected packages: zeroc-ice
00:39:55Successfully installed zeroc-ice-3.6.5
00:39:5500:39:55[notice] A new release of pip available: 22.3.1 -> 25.3
00:39:55[notice] To update, run: python3.11 -m pip install --upgrade pip
00:39:55+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:39:55Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:39:55Collecting setuptools<66
00:39:55 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:39:55Collecting omero-py
00:39:56 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
00:39:56Collecting appdirs
00:39:56 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:39:56Collecting future
00:39:56 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:39:56Collecting numpy<3
00:39:56 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.7 MB)
00:39:57Collecting Pillow>=10.0.0
00:39:57 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:39:57Collecting PyYAML
00:39:57 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:39:57Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:39:57Collecting requests
00:39:57 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:39:57Collecting portalocker
00:39:57 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:39:58Collecting charset_normalizer<4,>=2
00:39:58 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:39:58Collecting idna<4,>=2.5
00:39:58 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:39:58Collecting urllib3<3,>=1.21.1
00:39:58 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:39:58Collecting certifi>=2017.4.17
00:39:58 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
00:39:58Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:39:58 Attempting uninstall: setuptools
00:39:58 Found existing installation: setuptools 65.5.1
00:39:58 Uninstalling setuptools-65.5.1:
00:39:58 Successfully uninstalled setuptools-65.5.1
00:40:04Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.1.4 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.4.1 omero-py-5.21.3 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.3
00:40:0400:40:04[notice] A new release of pip available: 22.3.1 -> 25.3
00:40:04[notice] To update, run: python3.11 -m pip install --upgrade pip
00:40:04+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:40:04++ deactivate nondestructive
00:40:04++ '[' -n '' ']'
00:40:04++ '[' -n '' ']'
00:40:04++ hash -r
00:40:04++ '[' -n '' ']'
00:40:04++ unset VIRTUAL_ENV
00:40:04++ unset VIRTUAL_ENV_PROMPT
00:40:04++ '[' '!' nondestructive = nondestructive ']'
00:40:04++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:40:04++ export VIRTUAL_ENV
00:40:04++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:40:04++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:40:04++ export PATH
00:40:04++ '[' -n '' ']'
00:40:04++ '[' -z '' ']'
00:40:04++ _OLD_VIRTUAL_PS1=
00:40:04++ PS1='(omero-virtualenv) '
00:40:04++ export PS1
00:40:04++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:40:04++ export VIRTUAL_ENV_PROMPT
00:40:04++ hash -r
00:40:04+ source docs/hudson/OMERO.sh
00:40:04++ set -e
00:40:04++ set -u
00:40:04++ set -x
00:40:04++ source docs/hudson/functions.sh
00:40:04++ echo Building merge_ci
00:40:04Building merge_ci
00:40:04++ python3 ./build.py build-dev release-all
00:40:04Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:40:0500:40:05check-ivy:
00:40:05Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:40:05Created dir: /home/omero/workspace/OMERO-build/src/target
00:40:05:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:05:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:0600:40:06build-scons:
00:40:06Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:40:06No sub-builds to iterate on
00:40:06Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:40:0600:40:06buildlist:
00:40:06:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:0600:40:06clean:
00:40:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:0700:40:07python-clean:
00:40:07WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:07/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-586-9f1be4320f-ice36-b36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:07 warnings.warn(
00:40:07running clean
00:40:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:40:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:0700:40:07python-clean:
00:40:07WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:07/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-586-9f1be4320f-ice36-b36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:07 warnings.warn(
00:40:07running clean
00:40:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:40:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:0700:40:07python-clean:
00:40:07WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:07/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-586-9f1be4320f-ice36-b36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:07 warnings.warn(
00:40:07running clean
00:40:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:40:07Deleting directory /home/omero/workspace/OMERO-build/src/target
00:40:0700:40:07build-scons:
00:40:07Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:40:0700:40:07build:
00:40:07No sub-builds to iterate on
00:40:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:0800:40:08tools-init:
00:40:08no-op
00:40:0800:40:08retrieve:
00:40:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:5300:40:53prepare:
00:40:53Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:40:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:40:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:40:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:53Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:40:53Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:53Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:53Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:53Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:53Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:53Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:53Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:53Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:5300:40:53pre-compile:
00:40:53Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:53Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:54Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:54Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:54Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:5400:40:54compile:
00:40:54no-op
00:40:5400:40:54package:
00:40:54Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:40:5400:40:54install:
00:40:54:: delivering :: omero#omero_client;working@3ed3dc50d100 :: 5.6.3-586-9f1be4320f-ice36-b36 :: integration :: Wed Jan 28 00:40:08 UTC 2026
00:40:54 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:40:54:: publishing :: omero#omero_client
00:40:54 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-586-9f1be4320f-ice36-b36/omero_client-5.6.3-586-9f1be4320f-ice36-b36.jar
00:40:54 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-586-9f1be4320f-ice36-b36/omero_client-5.6.3-586-9f1be4320f-ice36-b36.xml
00:40:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:5500:40:55retrieve:
00:40:55:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:55:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:55Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:40:5500:40:55dist:
00:40:55Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:40:55Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:40:55Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:40:55Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:40:55Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:40:55Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:40:55Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:40:55Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:40:55Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:40:5500:40:55copy-licenses:
00:40:55Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:40:55Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:40:55Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:40:5500:40:55copy-history:
00:40:55Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:40:5500:40:55copy-etc:
00:40:55Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:40:55Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:40:5500:40:55copy-sql:
00:40:55Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:41:0200:41:02copy-server:
00:41:02 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:41:0200:41:02copy-client:
00:41:02Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:41:03 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:41:0300:41:03update-version:
00:41:03Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:41:0300:41:03create-workdirs:
00:41:03Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:41:03Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:41:03Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
00:41:0300:41:03copy-luts:
00:41:03Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:41:03Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:41:0300:41:03test-compile:
00:41:03:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:41:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:41:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:41:04Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:41:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:41:0400:41:04testng-init:
00:41:04:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:41:04:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:1000:41:09,761 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
00:41:1000:41:09,764 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2012ed86 - No custom configurators were discovered as a service.
00:41:1000:41:09,764 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2012ed86 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:41:1000:41:09,767 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2012ed86 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:41:1000:41:09,767 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:41:1000:41:09,767 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:41:1000:41:09,768 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2012ed86 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:41:1000:41:09,768 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2012ed86 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:41:1000:41:09,769 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2012ed86 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:41:1000:41:09,770 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:41:1000:41:09,770 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:41:1000:41:09,771 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5c512d91 - Resource [logback.xml] occurs multiple times on the classpath.
00:41:1000:41:09,771 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5c512d91 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:41:1000:41:09,771 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5c512d91 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:41:1000:41:09,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:41:1000:41:09,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:41:1000:41:09,990 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:41:1000:41:09,992 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6022a4c4 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:41:1000:41:09,992 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6022a4c4 - Please move "immediateFlush" property into the enclosing appender.
00:41:1000:41:10,045 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@6022a4c4 - Setting the "immediateFlush" property of the enclosing appender to true
00:41:1000:41:10,046 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:41:1000:41:10,046 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:41:1000:41:10,046 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:41:1000:41:10,046 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:41:1000:41:10,046 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:41:1000:41:10,046 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:41:1000:41:10,047 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@11092844 - End of configuration.
00:41:1000:41:10,049 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2640893e - Registering current configuration as safe fallback point
00:41:1000:41:10,049 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2012ed86 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 280 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:41:1000:41:10lifecycle.test-compile:
00:41:10Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:10Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:10warning: [options] bootstrap class path not set in conjunction with -source 8
00:41:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:11import omero.grid.RawAccessRequest;
00:41:11 ^
00:41:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:11import omero.grid.RawAccessRequest;
00:41:11 ^
00:41:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:11import omero.grid.RawAccessRequest;
00:41:11 ^
00:41:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:11import omero.model.ImportJob;
00:41:11 ^
00:41:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:41:11import omero.model.ImportJobI;
00:41:11 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:41:12 IObject link = (IObject) linkClass.newInstance();
00:41:12 ^
00:41:12 where T is a type-variable:
00:41:12 T extends Object declared in class Class
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:41:12 T copy = (T) obj.getClass().newInstance();
00:41:12 ^
00:41:12 where T is a type-variable:
00:41:12 T extends Object declared in class Class
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:12 RawAccessRequest raw = new RawAccessRequest();
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:12 RawAccessRequest raw = new RawAccessRequest();
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:12 raw.repoUuid = legacy.root().getHash().getValue();
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:12 raw.command = "rm";
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:12 raw.args = Arrays.asList(path);
00:41:12 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:41:13 final IObject link = linkClass.newInstance();
00:41:13 ^
00:41:13 where T is a type-variable:
00:41:13 T extends Object declared in class Class
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:41:13 originalLink.setChild(annotationClass.newInstance());
00:41:13 ^
00:41:13 where T is a type-variable:
00:41:13 T extends Object declared in class Class
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:41:13 RoiResult r = svc.findByImage(id, new RoiOptions());
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:13 final RawAccessRequest request = new RawAccessRequest();
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:13 final RawAccessRequest request = new RawAccessRequest();
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:13 request.repoUuid = repo.root().getHash().getValue();
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:13 request.command = "exists";
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:13 request.args = Collections.singletonList(dirPath);
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:13 final RawAccessRequest request = new RawAccessRequest();
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:13 final RawAccessRequest request = new RawAccessRequest();
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:13 request.repoUuid = repo.root().getHash().getValue();
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:13 request.command = "exists";
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:13 request.args = Collections.singletonList(dirName);
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:13 final ImportJob importJob = new ImportJobI();
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:41:13 final ImportJob importJob = new ImportJobI();
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:41:13 importJob.setImageName(omero.rtypes.rstring(name));
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:41:13 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:13 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:13 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:41:13 final String savedName = sent.getImageName().getValue().toString();
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:41:13 final String savedDesc = sent.getImageDescription().getValue().toString();
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:13 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:13 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:41:13 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:41:13 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:41:13 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:41:14 RoiResult r = svc.findByImage(image.getId().getValue(),
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:14 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:14 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:41:14 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:41:14 table = svc.getTable(f.getId().getValue());
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:41:14 RoiResult r = svc.findByImage(image.getId().getValue(),
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:41:14 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:41:14 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:41:14 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:41:14 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:14 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:14 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:14 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:14 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
00:41:14 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:14 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:14 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:14 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:14 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
00:41:14 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:41:14 svc.getShapeStatsRestricted(
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:41:14 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:14 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:14 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:14 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:14 request.typesToIgnore = Collections.singletonList("Annotation");
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:14 request.typesToIgnore = Collections.singletonList("Annotation");
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:14 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:14 p2.setRelatedTo(p1);
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:14 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:14 pixels1.setRelatedTo(pixels2);
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:14 Pixels pixels = pixels1.getRelatedTo();
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:14 Assert.assertNull(pixels1.getRelatedTo());
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:14 pixels1.setRelatedTo(pixels2);
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:14 Pixels pixels = pixels1.getRelatedTo();
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:14 Assert.assertNull(pixels1.getRelatedTo());
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:14 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:14 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:14 ^
00:41:14/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:14 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:14 ^
00:41:14Note: Some input files use unchecked or unsafe operations.
00:41:14Note: Recompile with -Xlint:unchecked for details.
00:41:1488 warnings
00:41:14Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1950989296.tmp
00:41:14Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:41:14:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:14:: delivering :: omero#OmeroJava-test;working@3ed3dc50d100 :: 5.6.3-586-9f1be4320f-ice36-b36 :: integration :: Wed Jan 28 00:41:04 UTC 2026
00:41:14 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:41:14:: publishing :: omero#OmeroJava-test
00:41:14 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-586-9f1be4320f-ice36-b36.jar
00:41:14 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-586-9f1be4320f-ice36-b36.xml
00:41:1400:41:14build-eclipse:
00:41:14No sub-builds to iterate on
00:41:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:41:1500:41:15retrieve:
00:41:15:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:41:15:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:1700:41:17prepare:
00:41:17Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:41:1800:41:18release-clients:
00:41:18Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-586-9f1be4320f-ice36-b36.zip
00:41:2300:41:23release-zip:
00:41:23Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-586-9f1be4320f-ice36-b36.zip
00:41:3300:41:33BUILD SUCCESSFUL
00:41:33Total time: 1 minute 28 seconds
00:41:33++ '[' -d .git ']'
00:41:33++ python3 ./build.py release-src
00:41:33Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:41:3300:41:33release-src-git:
00:41:33Releasing openmicroscopy-5.6.3-586-9f1be4320f-ice36-b36
00:41:35 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-586-9f1be4320f-ice36-b36.zip
00:41:35 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-586-9f1be4320f-ice36-b36-base.zip
00:41:3600:41:36BUILD SUCCESSFUL
00:41:36Total time: 3 seconds
00:41:36++ echo BUILD_NUMBER=36
00:41:36++ echo OMERO_BRANCH=merge_ci
00:41:36++ git_info
00:41:36+++ git rev-parse HEAD
00:41:36++ HEAD=9f1be4320fce49c48c554f684eaace5ef203dde6
00:41:36++ git log --max-count=1 9f1be4320fce49c48c554f684eaace5ef203dde6
00:41:36++ env
00:41:36++ sort
00:41:36Archiving artifacts
00:41:52Finished: SUCCESS
