01:38:16Started by upstream project "Trigger" build number 42801:38:16originally caused by:
01:38:16 Started by timer
01:38:16Running as SYSTEM
01:38:16Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:38:16The recommended git tool is: NONE
01:38:16No credentials specified
01:38:16 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:38:16Fetching changes from the remote Git repository
01:38:16 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:38:16Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:38:16 > git --version # timeout=10
01:38:16 > git --version # 'git version 2.43.5'
01:38:16 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:38:17 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:38:17Checking out Revision 2a41c3c4a6c5c68a5447d5775d5fcadcb4752c36 (origin/merge_ci)
01:38:17 > git config core.sparsecheckout # timeout=10
01:38:17 > git checkout -f 2a41c3c4a6c5c68a5447d5775d5fcadcb4752c36 # timeout=10
01:38:17Commit message: "Add version.properties to etc/omero.properties"
01:38:17 > git rev-list --no-walk 2e64d424359d7a9ddae96e644d0d504a304fc9c7 # timeout=10
01:38:17Cleaning workspace
01:38:17 > git rev-parse --verify HEAD # timeout=10
01:38:17Resetting working tree
01:38:17 > git reset --hard # timeout=10
01:38:17 > git clean -fdx # timeout=10
01:38:17Copied 6 artifacts from "OMERO-python-superbuild-build" build number 36201:38:17[OMERO-build] $ /bin/bash -xe /tmp/jenkins15771600086973136677.sh
01:38:17+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
01:38:17+ cd src
01:38:17+ export OMERO_BRANCH=merge_ci
01:38:17+ OMERO_BRANCH=merge_ci
01:38:17+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:38:17+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:38:17+ source /home/omero/settings.env
01:38:17++ OMERO_DB_HOST=pg
01:38:17++ OMERO_DB_USER=postgres
01:38:17++ OMERO_DB_PASS=
01:38:17++ OMERO_ROOT_PASS=omero
01:38:17++ OMERO_DATA_DIR=/OMERO
01:38:17++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:38:17+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:38:21+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl01:38:21Collecting zeroc-ice==3.6.5
01:38:22 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:38:24 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.6 MB/s eta 0:00:00
01:38:24Installing collected packages: zeroc-ice
01:38:25Successfully installed zeroc-ice-3.6.5
01:38:2501:38:25[notice] A new release of pip available: 22.3.1 -> 25.0.1
01:38:25[notice] To update, run: python3.11 -m pip install --upgrade pip
01:38:25+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:38:25Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:38:25Collecting setuptools<66
01:38:25 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:38:25Collecting omero-py
01:38:25 Using cached omero_py-5.19.8-py3-none-any.whl (2.8 MB)
01:38:26Collecting urllib3<2
01:38:26 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
01:38:26Collecting appdirs
01:38:26 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:38:26Collecting future
01:38:26 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:38:26Collecting numpy<2
01:38:26 Using cached numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.3 MB)
01:38:27Collecting Pillow>=10.0.0
01:38:27 Using cached pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl (4.5 MB)
01:38:27Collecting PyYAML
01:38:27 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
01:38:27Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:38:27Collecting requests
01:38:27 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
01:38:27Collecting portalocker
01:38:27 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
01:38:27Collecting charset-normalizer<4,>=2
01:38:27 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB)
01:38:27Collecting idna<4,>=2.5
01:38:27 Using cached idna-3.10-py3-none-any.whl (70 kB)
01:38:27Collecting certifi>=2017.4.17
01:38:27 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB)
01:38:27Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py
01:38:28 Attempting uninstall: setuptools
01:38:28 Found existing installation: setuptools 65.5.1
01:38:28 Uninstalling setuptools-65.5.1:
01:38:28 Successfully uninstalled setuptools-65.5.1
01:38:33Successfully installed Pillow-11.1.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.1.31 charset-normalizer-3.4.1 future-1.0.0 idna-3.10 numpy-1.26.4 omero-py-5.19.8 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20
01:38:3301:38:33[notice] A new release of pip available: 22.3.1 -> 25.0.1
01:38:33[notice] To update, run: python3.11 -m pip install --upgrade pip
01:38:33+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:38:33++ deactivate nondestructive
01:38:33++ '[' -n '' ']'
01:38:33++ '[' -n '' ']'
01:38:33++ hash -r
01:38:33++ '[' -n '' ']'
01:38:33++ unset VIRTUAL_ENV
01:38:33++ unset VIRTUAL_ENV_PROMPT
01:38:33++ '[' '!' nondestructive = nondestructive ']'
01:38:33++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:38:33++ export VIRTUAL_ENV
01:38:33++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:38:33++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:38:33++ export PATH
01:38:33++ '[' -n '' ']'
01:38:33++ '[' -z '' ']'
01:38:33++ _OLD_VIRTUAL_PS1=
01:38:33++ PS1='(omero-virtualenv) '
01:38:33++ export PS1
01:38:33++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:38:33++ export VIRTUAL_ENV_PROMPT
01:38:33++ hash -r
01:38:33+ source docs/hudson/OMERO.sh
01:38:33++ set -e
01:38:33++ set -u
01:38:33++ set -x
01:38:33++ source docs/hudson/functions.sh
01:38:33++ echo Building merge_ci
01:38:33Building merge_ci
01:38:33++ python3 ./build.py build-dev release-all
01:38:33Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:38:3401:38:34check-ivy:
01:38:34Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:38:34Created dir: /home/omero/workspace/OMERO-build/src/target
01:38:34:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:38:34:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:38:3501:38:35build-scons:
01:38:35Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:38:35No sub-builds to iterate on
01:38:35Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:38:3501:38:35buildlist:
01:38:35:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:38:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:38:3501:38:35clean:
01:38:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:38:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:38:3501:38:35python-clean:
01:38:35WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:38:35/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-554-2a41c3c4a6-ice36-b370') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:38:35 warnings.warn(
01:38:35running clean
01:38:35Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:38:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:38:3601:38:36python-clean:
01:38:36WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:38:36/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-554-2a41c3c4a6-ice36-b370') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:38:36 warnings.warn(
01:38:36running clean
01:38:36Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:38:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:38:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:38:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:38:3601:38:36python-clean:
01:38:36WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:38:36/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-554-2a41c3c4a6-ice36-b370') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:38:36 warnings.warn(
01:38:36running clean
01:38:36Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:38:36Deleting directory /home/omero/workspace/OMERO-build/src/target
01:38:3601:38:36build-scons:
01:38:36Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:38:3601:38:36build:
01:38:36No sub-builds to iterate on
01:38:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:38:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:38:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:38:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:38:3701:38:37tools-init:
01:38:37no-op
01:38:3701:38:37retrieve:
01:38:37:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:38:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:38:37WARNING: An illegal reflective access operation has occurred
01:38:37WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
01:38:37WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
01:38:37WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
01:38:37WARNING: All illegal access operations will be denied in a future release
01:38:4801:38:48prepare:
01:38:48Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:38:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:38:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:38:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:38:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:38:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:38:48Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:38:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:38:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:38:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:38:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:38:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:38:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:38:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:38:48Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:38:4801:38:48pre-compile:
01:38:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:38:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:38:49Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:38:49Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:38:49Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:38:4901:38:49compile:
01:38:49no-op
01:38:4901:38:49package:
01:38:49Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:38:4901:38:49install:
01:38:49:: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-554-2a41c3c4a6-ice36-b370 :: integration :: Thu Apr 03 01:38:37 UTC 2025
01:38:49 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:38:49:: publishing :: omero#omero_client
01:38:50 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-554-2a41c3c4a6-ice36-b370/omero_client-5.6.3-554-2a41c3c4a6-ice36-b370.jar
01:38:50 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-554-2a41c3c4a6-ice36-b370/omero_client-5.6.3-554-2a41c3c4a6-ice36-b370.xml
01:38:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:38:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:38:5001:38:50retrieve:
01:38:50:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:38:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:38:50Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:38:5001:38:50dist:
01:38:50Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:38:50Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:38:50Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:38:50Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:38:50Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:38:50Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:38:50Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:38:50Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:38:50Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:38:5101:38:51copy-licenses:
01:38:51Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:38:51Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:38:51Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:38:5101:38:51copy-history:
01:38:51Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:38:5101:38:51copy-etc:
01:38:51Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:38:51Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:38:5101:38:51copy-sql:
01:38:51Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:38:5601:38:56copy-server:
01:38:56 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
01:38:5601:38:56copy-client:
01:38:56Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:38:57 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
01:38:5701:38:57update-version:
01:38:57Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:38:5901:38:59create-workdirs:
01:38:59Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:38:59Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:38:5901:38:59copy-luts:
01:38:59Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:38:59Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:38:5901:38:59test-compile:
01:38:59:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:38:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:38:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:38:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:38:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:38:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:38:59Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:38:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:39:0001:39:00testng-init:
01:39:00:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:39:00:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:39:0301:39:02,791 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
01:39:0301:39:02,794 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7d7a0e06 - No custom configurators were discovered as a service.
01:39:0301:39:02,794 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7d7a0e06 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:39:0301:39:02,797 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7d7a0e06 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:39:0301:39:02,798 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:39:0301:39:02,798 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:39:0301:39:02,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7d7a0e06 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:39:0301:39:02,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7d7a0e06 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:39:0301:39:02,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7d7a0e06 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:39:0301:39:02,801 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:39:0301:39:02,801 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:39:0301:39:02,802 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2c3f9229 - Resource [logback.xml] occurs multiple times on the classpath.
01:39:0301:39:02,802 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2c3f9229 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:39:0301:39:02,802 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2c3f9229 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:39:0301:39:03,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:39:0301:39:03,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:39:0301:39:03,028 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:39:0301:39:03,030 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@abe3a3 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:39:0301:39:03,030 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@abe3a3 - Please move "immediateFlush" property into the enclosing appender.
01:39:0301:39:03,092 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@abe3a3 - Setting the "immediateFlush" property of the enclosing appender to true
01:39:0301:39:03,093 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:39:0301:39:03,093 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:39:0301:39:03,093 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:39:0301:39:03,093 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:39:0301:39:03,093 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:39:0301:39:03,093 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:39:0301:39:03,095 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@396ab19d - End of configuration.
01:39:0301:39:03,097 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@14cd9288 - Registering current configuration as safe fallback point
01:39:0301:39:03,097 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7d7a0e06 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 297 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:39:0301:39:03lifecycle.test-compile:
01:39:03Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:39:03Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:39:03warning: [options] bootstrap class path not set in conjunction with -source 8
01:39:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:04import omero.grid.RawAccessRequest;
01:39:04 ^
01:39:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:04import omero.grid.RawAccessRequest;
01:39:04 ^
01:39:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:04import omero.grid.RawAccessRequest;
01:39:04 ^
01:39:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:39:04import omero.model.ImportJob;
01:39:04 ^
01:39:04/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:39:04import omero.model.ImportJobI;
01:39:04 ^
01:39:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:39:05 IObject link = (IObject) linkClass.newInstance();
01:39:05 ^
01:39:05 where T is a type-variable:
01:39:05 T extends Object declared in class Class
01:39:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:39:05 T copy = (T) obj.getClass().newInstance();
01:39:05 ^
01:39:05 where T is a type-variable:
01:39:05 T extends Object declared in class Class
01:39:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:05 RawAccessRequest raw = new RawAccessRequest();
01:39:05 ^
01:39:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:05 RawAccessRequest raw = new RawAccessRequest();
01:39:05 ^
01:39:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:39:05 raw.repoUuid = legacy.root().getHash().getValue();
01:39:05 ^
01:39:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:39:05 raw.command = "rm";
01:39:05 ^
01:39:05/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:39:05 raw.args = Arrays.asList(path);
01:39:05 ^
01:39:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:39:06 final IObject link = linkClass.newInstance();
01:39:06 ^
01:39:06 where T is a type-variable:
01:39:06 T extends Object declared in class Class
01:39:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:39:06 originalLink.setChild(annotationClass.newInstance());
01:39:06 ^
01:39:06 where T is a type-variable:
01:39:06 T extends Object declared in class Class
01:39:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:39:06 RoiResult r = svc.findByImage(id, new RoiOptions());
01:39:06 ^
01:39:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:06 final RawAccessRequest request = new RawAccessRequest();
01:39:06 ^
01:39:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:06 final RawAccessRequest request = new RawAccessRequest();
01:39:06 ^
01:39:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:39:06 request.repoUuid = repo.root().getHash().getValue();
01:39:06 ^
01:39:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:39:06 request.command = "exists";
01:39:06 ^
01:39:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:39:06 request.args = Collections.singletonList(dirPath);
01:39:06 ^
01:39:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:06 final RawAccessRequest request = new RawAccessRequest();
01:39:06 ^
01:39:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:39:06 final RawAccessRequest request = new RawAccessRequest();
01:39:06 ^
01:39:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:39:06 request.repoUuid = repo.root().getHash().getValue();
01:39:06 ^
01:39:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:39:06 request.command = "exists";
01:39:06 ^
01:39:06/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:39:06 request.args = Collections.singletonList(dirName);
01:39:06 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:39:07 final ImportJob importJob = new ImportJobI();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:39:07 final ImportJob importJob = new ImportJobI();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:39:07 importJob.setImageName(omero.rtypes.rstring(name));
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:39:07 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:39:07 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:39:07 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:39:07 final String savedName = sent.getImageName().getValue().toString();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:39:07 final String savedDesc = sent.getImageDescription().getValue().toString();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:39:07 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:39:07 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:39:07 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:39:07 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:39:07 RoiResult r = svc.findByImage(image.getId().getValue(),
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:07 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:07 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:07 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:07 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:39:07 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:07 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:39:07 table = svc.getTable(f.getId().getValue());
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:39:07 RoiResult r = svc.findByImage(image.getId().getValue(),
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:39:07 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:39:07 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:39:07 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:39:07 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:39:07 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:39:07 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:39:07 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:39:07 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
01:39:07 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:39:07 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:39:07 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:39:07 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:39:07 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:39:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:39:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:39:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:39:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:39:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:39:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:39:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:39:07 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:39:07 svc.getShapeStatsRestricted(
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:39:07 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:39:07 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:39:07 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:39:07 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:39:07 request.typesToIgnore = Collections.singletonList("Annotation");
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:39:07 request.typesToIgnore = Collections.singletonList("Annotation");
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:39:07 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:39:07 p2.setRelatedTo(p1);
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:39:07 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:39:07 pixels1.setRelatedTo(pixels2);
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:39:07 Pixels pixels = pixels1.getRelatedTo();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:39:07 Assert.assertNull(pixels1.getRelatedTo());
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:39:07 pixels1.setRelatedTo(pixels2);
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:39:07 Pixels pixels = pixels1.getRelatedTo();
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:39:07 Assert.assertNull(pixels1.getRelatedTo());
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:07 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:07 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:07 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:39:07 ^
01:39:07/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:39:07 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:39:07 ^
01:39:08Note: Some input files use unchecked or unsafe operations.
01:39:08Note: Recompile with -Xlint:unchecked for details.
01:39:0888 warnings
01:39:08Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_814882108.tmp
01:39:08Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:39:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:39:08:: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-554-2a41c3c4a6-ice36-b370 :: integration :: Thu Apr 03 01:38:59 UTC 2025
01:39:08 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:39:08:: publishing :: omero#OmeroJava-test
01:39:08 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-554-2a41c3c4a6-ice36-b370.jar
01:39:08 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-554-2a41c3c4a6-ice36-b370.xml
01:39:0801:39:08build-eclipse:
01:39:08No sub-builds to iterate on
01:39:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:39:0801:39:08retrieve:
01:39:08:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:39:08:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:39:1101:39:11prepare:
01:39:11Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:39:1201:39:12release-clients:
01:39:12Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-554-2a41c3c4a6-ice36-b370.zip
01:39:1801:39:18release-zip:
01:39:18Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-554-2a41c3c4a6-ice36-b370.zip
01:39:3201:39:32BUILD SUCCESSFUL
01:39:32Total time: 58 seconds
01:39:32++ '[' -d .git ']'
01:39:32++ python3 ./build.py release-src
01:39:32Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:39:3301:39:33release-src-git:
01:39:33Releasing openmicroscopy-5.6.3-554-2a41c3c4a6-ice36-b370
01:39:34 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-554-2a41c3c4a6-ice36-b370.zip
01:39:34 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-554-2a41c3c4a6-ice36-b370-base.zip
01:39:3601:39:36BUILD SUCCESSFUL
01:39:36Total time: 3 seconds
01:39:36++ echo BUILD_NUMBER=370
01:39:36++ echo OMERO_BRANCH=merge_ci
01:39:36++ git_info
01:39:36+++ git rev-parse HEAD
01:39:36++ HEAD=2a41c3c4a6c5c68a5447d5775d5fcadcb4752c36
01:39:36++ git log --max-count=1 2a41c3c4a6c5c68a5447d5775d5fcadcb4752c36
01:39:36++ env
01:39:36++ sort
01:39:36Archiving artifacts
01:40:04Finished: SUCCESS
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