11:37:22Started by upstream project "Trigger" build number 43411:37:22originally caused by:
11:37:22 Started by user devspace11:37:22 Restarted from build #433, stage OMERO Python
11:37:22Running as SYSTEM
11:37:22Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
11:37:22The recommended git tool is: NONE
11:37:22No credentials specified
11:37:22 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
11:37:22Fetching changes from the remote Git repository
11:37:22 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
11:37:22Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git11:37:22 > git --version # timeout=10
11:37:22 > git --version # 'git version 2.43.5'
11:37:22 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
11:37:23 > git rev-parse origin/merge_ci^{commit} # timeout=10
11:37:23Checking out Revision fdc7be2b32464958ffe826facf36129f9304c5f5 (origin/merge_ci)
11:37:23 > git config core.sparsecheckout # timeout=10
11:37:23 > git checkout -f fdc7be2b32464958ffe826facf36129f9304c5f5 # timeout=10
11:37:23Commit message: "Add version.properties to etc/omero.properties"
11:37:23 > git rev-list --no-walk 765bb833e1246bc9f998c327782c814ce98bafc1 # timeout=10
11:37:23Cleaning workspace
11:37:23 > git rev-parse --verify HEAD # timeout=10
11:37:23Resetting working tree
11:37:23 > git reset --hard # timeout=10
11:37:23 > git clean -fdx # timeout=10
11:37:23Copied 6 artifacts from "OMERO-python-superbuild-build" build number 36811:37:23[OMERO-build] $ /bin/bash -xe /tmp/jenkins146563527842731187.sh
11:37:23+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
11:37:23+ cd src
11:37:23+ export OMERO_BRANCH=merge_ci
11:37:23+ OMERO_BRANCH=merge_ci
11:37:23+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
11:37:23+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
11:37:23+ source /home/omero/settings.env
11:37:23++ OMERO_DB_HOST=pg
11:37:23++ OMERO_DB_USER=postgres
11:37:23++ OMERO_DB_PASS=
11:37:23++ OMERO_ROOT_PASS=omero
11:37:23++ OMERO_DATA_DIR=/OMERO
11:37:23++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
11:37:23+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
11:37:27+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl11:37:27Collecting zeroc-ice==3.6.5
11:37:28 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
11:37:33 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 3.1 MB/s eta 0:00:00
11:37:33Installing collected packages: zeroc-ice
11:37:34Successfully installed zeroc-ice-3.6.5
11:37:3411:37:34[notice] A new release of pip available: 22.3.1 -> 25.0.1
11:37:34[notice] To update, run: python3.11 -m pip install --upgrade pip
11:37:34+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
11:37:34Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
11:37:35Collecting setuptools<66
11:37:35 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
11:37:35Collecting omero-py
11:37:35 Using cached omero_py-5.19.8-py3-none-any.whl (2.8 MB)
11:37:35Collecting urllib3<2
11:37:35 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
11:37:35Collecting appdirs
11:37:35 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
11:37:35Collecting future
11:37:35 Using cached future-1.0.0-py3-none-any.whl (491 kB)
11:37:35Collecting numpy<2
11:37:35 Using cached numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.3 MB)
11:37:36Collecting Pillow>=10.0.0
11:37:36 Using cached pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl (4.5 MB)
11:37:36Collecting PyYAML
11:37:36 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
11:37:36Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
11:37:36Collecting requests
11:37:36 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
11:37:36Collecting portalocker
11:37:36 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
11:37:36Collecting charset-normalizer<4,>=2
11:37:36 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB)
11:37:36Collecting idna<4,>=2.5
11:37:36 Using cached idna-3.10-py3-none-any.whl (70 kB)
11:37:36Collecting certifi>=2017.4.17
11:37:36 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB)
11:37:37Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py
11:37:37 Attempting uninstall: setuptools
11:37:37 Found existing installation: setuptools 65.5.1
11:37:37 Uninstalling setuptools-65.5.1:
11:37:37 Successfully uninstalled setuptools-65.5.1
11:37:42Successfully installed Pillow-11.1.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.1.31 charset-normalizer-3.4.1 future-1.0.0 idna-3.10 numpy-1.26.4 omero-py-5.19.8 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20
11:37:4211:37:42[notice] A new release of pip available: 22.3.1 -> 25.0.1
11:37:42[notice] To update, run: python3.11 -m pip install --upgrade pip
11:37:42+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
11:37:42++ deactivate nondestructive
11:37:42++ '[' -n '' ']'
11:37:42++ '[' -n '' ']'
11:37:42++ hash -r
11:37:42++ '[' -n '' ']'
11:37:42++ unset VIRTUAL_ENV
11:37:42++ unset VIRTUAL_ENV_PROMPT
11:37:42++ '[' '!' nondestructive = nondestructive ']'
11:37:42++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
11:37:42++ export VIRTUAL_ENV
11:37:42++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:37:42++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:37:42++ export PATH
11:37:42++ '[' -n '' ']'
11:37:42++ '[' -z '' ']'
11:37:42++ _OLD_VIRTUAL_PS1=
11:37:42++ PS1='(omero-virtualenv) '
11:37:42++ export PS1
11:37:42++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
11:37:42++ export VIRTUAL_ENV_PROMPT
11:37:42++ hash -r
11:37:42+ source docs/hudson/OMERO.sh
11:37:42++ set -e
11:37:42++ set -u
11:37:42++ set -x
11:37:42++ source docs/hudson/functions.sh
11:37:42++ echo Building merge_ci
11:37:42Building merge_ci
11:37:42++ python3 ./build.py build-dev release-all
11:37:42Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
11:37:4311:37:43check-ivy:
11:37:43Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
11:37:43Created dir: /home/omero/workspace/OMERO-build/src/target
11:37:43:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:37:43:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:37:4411:37:44build-scons:
11:37:44Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:37:44No sub-builds to iterate on
11:37:44Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:37:4411:37:44buildlist:
11:37:44:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:37:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:37:4411:37:44clean:
11:37:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:37:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:37:4511:37:45python-clean:
11:37:45WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:37:45/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-554-fdc7be2b32-ice36-b376') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:37:45 warnings.warn(
11:37:45running clean
11:37:45Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
11:37:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:37:4511:37:45python-clean:
11:37:45WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:37:45/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-554-fdc7be2b32-ice36-b376') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:37:45 warnings.warn(
11:37:45running clean
11:37:45Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
11:37:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:37:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:37:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:37:4511:37:45python-clean:
11:37:45WARNING: '' not a valid package name; please use only .-separated package names in setup.py
11:37:45/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-554-fdc7be2b32-ice36-b376') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
11:37:45 warnings.warn(
11:37:45running clean
11:37:45Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
11:37:45Deleting directory /home/omero/workspace/OMERO-build/src/target
11:37:4511:37:45build-scons:
11:37:45Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
11:37:4611:37:46build:
11:37:46No sub-builds to iterate on
11:37:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:37:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:37:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:37:46Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:37:4611:37:46tools-init:
11:37:46no-op
11:37:4611:37:46retrieve:
11:37:46:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:37:46:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:37:46WARNING: An illegal reflective access operation has occurred
11:37:46WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
11:37:46WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
11:37:46WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
11:37:46WARNING: All illegal access operations will be denied in a future release
11:38:1611:38:16prepare:
11:38:16Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
11:38:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
11:38:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
11:38:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:38:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:38:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:38:16Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
11:38:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:38:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:38:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:38:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:38:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:38:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:38:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
11:38:16Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
11:38:1611:38:16pre-compile:
11:38:16Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:38:16Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:38:16Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:38:17Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:38:17Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
11:38:1711:38:17compile:
11:38:17no-op
11:38:1711:38:17package:
11:38:17Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
11:38:1711:38:17install:
11:38:17:: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-554-fdc7be2b32-ice36-b376 :: integration :: Tue Apr 08 11:37:46 UTC 2025
11:38:17 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
11:38:17:: publishing :: omero#omero_client
11:38:17 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-554-fdc7be2b32-ice36-b376/omero_client-5.6.3-554-fdc7be2b32-ice36-b376.jar
11:38:17 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-554-fdc7be2b32-ice36-b376/omero_client-5.6.3-554-fdc7be2b32-ice36-b376.xml
11:38:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:38:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:38:1811:38:18retrieve:
11:38:18:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:38:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:38:18Entering /home/omero/workspace/OMERO-build/src/components/tools...
11:38:1811:38:18dist:
11:38:18Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
11:38:18Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
11:38:18Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:38:18Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
11:38:18Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
11:38:18Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
11:38:18Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
11:38:18Entering /home/omero/workspace/OMERO-build/src/components/tests...
11:38:18Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
11:38:1811:38:18copy-licenses:
11:38:18Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:38:18Created dir: /home/omero/workspace/OMERO-build/src/dist/share
11:38:18Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
11:38:1811:38:18copy-history:
11:38:18Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
11:38:1811:38:18copy-etc:
11:38:18Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
11:38:18Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
11:38:1811:38:18copy-sql:
11:38:18Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
11:38:2311:38:23copy-server:
11:38:23 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
11:38:2311:38:23copy-client:
11:38:23Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
11:38:24 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
11:38:2411:38:24update-version:
11:38:24Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
11:38:2411:38:24create-workdirs:
11:38:24Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
11:38:24Created dir: /home/omero/workspace/OMERO-build/src/dist/var
11:38:2411:38:24copy-luts:
11:38:24Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
11:38:24Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
11:38:2411:38:24test-compile:
11:38:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:38:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
11:38:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:38:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
11:38:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:38:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
11:38:25Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
11:38:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:38:2511:38:25testng-init:
11:38:25:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:38:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:38:2811:38:27,953 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
11:38:2811:38:27,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - No custom configurators were discovered as a service.
11:38:2811:38:27,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
11:38:2811:38:27,959 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
11:38:2811:38:27,960 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
11:38:2811:38:27,960 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
11:38:2811:38:27,961 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
11:38:2811:38:27,961 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
11:38:2811:38:27,962 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
11:38:2811:38:27,963 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
11:38:2811:38:27,963 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
11:38:2811:38:27,964 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs multiple times on the classpath.
11:38:2811:38:27,964 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
11:38:2811:38:27,964 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
11:38:2811:38:28,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
11:38:2811:38:28,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
11:38:2811:38:28,178 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
11:38:2811:38:28,180 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
11:38:2811:38:28,180 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - Please move "immediateFlush" property into the enclosing appender.
11:38:2811:38:28,240 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - Setting the "immediateFlush" property of the enclosing appender to true
11:38:2811:38:28,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
11:38:2811:38:28,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
11:38:2811:38:28,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
11:38:2811:38:28,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
11:38:2811:38:28,241 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
11:38:2811:38:28,241 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
11:38:2811:38:28,242 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7d7a0e06 - End of configuration.
11:38:2811:38:28,245 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2c3f9229 - Registering current configuration as safe fallback point
11:38:2811:38:28,245 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
11:38:2811:38:28lifecycle.test-compile:
11:38:28Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:38:28Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
11:38:28warning: [options] bootstrap class path not set in conjunction with -source 8
11:38:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:38:29import omero.grid.RawAccessRequest;
11:38:29 ^
11:38:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:38:29import omero.grid.RawAccessRequest;
11:38:29 ^
11:38:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:38:30import omero.grid.RawAccessRequest;
11:38:30 ^
11:38:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
11:38:30import omero.model.ImportJob;
11:38:30 ^
11:38:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:38:30import omero.model.ImportJobI;
11:38:30 ^
11:38:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
11:38:30 IObject link = (IObject) linkClass.newInstance();
11:38:30 ^
11:38:30 where T is a type-variable:
11:38:30 T extends Object declared in class Class
11:38:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
11:38:30 T copy = (T) obj.getClass().newInstance();
11:38:30 ^
11:38:30 where T is a type-variable:
11:38:30 T extends Object declared in class Class
11:38:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:38:30 RawAccessRequest raw = new RawAccessRequest();
11:38:30 ^
11:38:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:38:30 RawAccessRequest raw = new RawAccessRequest();
11:38:30 ^
11:38:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:38:30 raw.repoUuid = legacy.root().getHash().getValue();
11:38:30 ^
11:38:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
11:38:30 raw.command = "rm";
11:38:30 ^
11:38:30/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
11:38:30 raw.args = Arrays.asList(path);
11:38:30 ^
11:38:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
11:38:31 final IObject link = linkClass.newInstance();
11:38:31 ^
11:38:31 where T is a type-variable:
11:38:31 T extends Object declared in class Class
11:38:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
11:38:31 originalLink.setChild(annotationClass.newInstance());
11:38:31 ^
11:38:31 where T is a type-variable:
11:38:31 T extends Object declared in class Class
11:38:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:38:31 RoiResult r = svc.findByImage(id, new RoiOptions());
11:38:31 ^
11:38:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:38:31 final RawAccessRequest request = new RawAccessRequest();
11:38:31 ^
11:38:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:38:31 final RawAccessRequest request = new RawAccessRequest();
11:38:31 ^
11:38:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:38:31 request.repoUuid = repo.root().getHash().getValue();
11:38:31 ^
11:38:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
11:38:31 request.command = "exists";
11:38:31 ^
11:38:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
11:38:31 request.args = Collections.singletonList(dirPath);
11:38:31 ^
11:38:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:38:31 final RawAccessRequest request = new RawAccessRequest();
11:38:31 ^
11:38:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:38:31 final RawAccessRequest request = new RawAccessRequest();
11:38:31 ^
11:38:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:38:31 request.repoUuid = repo.root().getHash().getValue();
11:38:31 ^
11:38:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
11:38:31 request.command = "exists";
11:38:31 ^
11:38:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
11:38:31 request.args = Collections.singletonList(dirName);
11:38:31 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
11:38:32 final ImportJob importJob = new ImportJobI();
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:38:32 final ImportJob importJob = new ImportJobI();
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
11:38:32 importJob.setImageName(omero.rtypes.rstring(name));
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
11:38:32 importJob.setImageDescription(omero.rtypes.rstring(desc));
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:38:32 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:38:32 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:38:32 final String savedName = sent.getImageName().getValue().toString();
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:38:32 final String savedDesc = sent.getImageDescription().getValue().toString();
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:38:32 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:38:32 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:38:32 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:38:32 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:38:32 RoiResult r = svc.findByImage(image.getId().getValue(),
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:38:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:38:32 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:38:32 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:38:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
11:38:32 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:38:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
11:38:32 table = svc.getTable(f.getId().getValue());
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:38:32 RoiResult r = svc.findByImage(image.getId().getValue(),
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:38:32 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:38:32 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:38:32 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:38:32 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
11:38:32 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
11:38:32 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
11:38:32 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
11:38:32 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
11:38:32 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
11:38:32 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
11:38:32 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
11:38:32 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
11:38:32 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
11:38:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
11:38:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
11:38:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
11:38:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
11:38:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
11:38:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
11:38:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
11:38:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:38:32 svc.getShapeStatsRestricted(
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:38:32 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:38:32 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:38:32 request.typesToIgnore = Collections.singletonList("TagAnnotation");
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:38:32 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:38:32 request.typesToIgnore = Collections.singletonList("Annotation");
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:38:32 request.typesToIgnore = Collections.singletonList("Annotation");
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:38:32 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:38:32 p2.setRelatedTo(p1);
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:38:32 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:38:32 pixels1.setRelatedTo(pixels2);
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:38:32 Pixels pixels = pixels1.getRelatedTo();
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:38:32 Assert.assertNull(pixels1.getRelatedTo());
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:38:32 pixels1.setRelatedTo(pixels2);
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:38:32 Pixels pixels = pixels1.getRelatedTo();
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:38:32 Assert.assertNull(pixels1.getRelatedTo());
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:38:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:38:32 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:38:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:38:32 ^
11:38:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:38:32 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:38:32 ^
11:38:33Note: Some input files use unchecked or unsafe operations.
11:38:33Note: Recompile with -Xlint:unchecked for details.
11:38:3388 warnings
11:38:33Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_811534405.tmp
11:38:33Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
11:38:33:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:38:33:: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-554-fdc7be2b32-ice36-b376 :: integration :: Tue Apr 08 11:38:25 UTC 2025
11:38:33 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
11:38:33:: publishing :: omero#OmeroJava-test
11:38:33 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-554-fdc7be2b32-ice36-b376.jar
11:38:33 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-554-fdc7be2b32-ice36-b376.xml
11:38:3311:38:33build-eclipse:
11:38:33No sub-builds to iterate on
11:38:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
11:38:3311:38:33retrieve:
11:38:33:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:38:33:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
11:38:3511:38:35prepare:
11:38:35Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
11:38:3611:38:36release-clients:
11:38:36Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-554-fdc7be2b32-ice36-b376.zip
11:38:4311:38:43release-zip:
11:38:43Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-554-fdc7be2b32-ice36-b376.zip
11:38:5711:38:57BUILD SUCCESSFUL
11:38:57Total time: 1 minute 14 seconds
11:38:57++ '[' -d .git ']'
11:38:57++ python3 ./build.py release-src
11:38:57Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
11:38:5711:38:57release-src-git:
11:38:57Releasing openmicroscopy-5.6.3-554-fdc7be2b32-ice36-b376
11:38:59 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-554-fdc7be2b32-ice36-b376.zip
11:38:59 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-554-fdc7be2b32-ice36-b376-base.zip
11:39:0011:39:00BUILD SUCCESSFUL
11:39:00Total time: 3 seconds
11:39:00++ echo BUILD_NUMBER=376
11:39:00++ echo OMERO_BRANCH=merge_ci
11:39:00++ git_info
11:39:00+++ git rev-parse HEAD
11:39:00++ HEAD=fdc7be2b32464958ffe826facf36129f9304c5f5
11:39:00++ git log --max-count=1 fdc7be2b32464958ffe826facf36129f9304c5f5
11:39:00++ env
11:39:00++ sort
11:39:00Archiving artifacts
11:39:29Finished: SUCCESS
![[Jenkins]](/jenkins/static/861d2fbf/images/svgs/logo.svg){kind=logo}
