01:03:02Started by upstream project "Trigger" build number 44601:03:02originally caused by:
01:03:02 Started by timer
01:03:02Running as SYSTEM
01:03:02Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:03:02The recommended git tool is: NONE
01:03:02No credentials specified
01:03:02 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:03:02Fetching changes from the remote Git repository
01:03:02 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:03:02Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:03:02 > git --version # timeout=10
01:03:02 > git --version # 'git version 2.43.5'
01:03:02 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:03:03 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:03:03Checking out Revision 9639368fdd5e9d5eb9507ddc5cde3278af73506c (origin/merge_ci)
01:03:03 > git config core.sparsecheckout # timeout=10
01:03:03 > git checkout -f 9639368fdd5e9d5eb9507ddc5cde3278af73506c # timeout=10
01:03:03Commit message: "Add version.properties to etc/omero.properties"
01:03:03 > git rev-list --no-walk 1d3965eb9380908e5722e695c10549fa15d9a983 # timeout=10
01:03:03Cleaning workspace
01:03:03 > git rev-parse --verify HEAD # timeout=10
01:03:03Resetting working tree
01:03:03 > git reset --hard # timeout=10
01:03:03 > git clean -fdx # timeout=10
01:03:03Copied 6 artifacts from "OMERO-python-superbuild-build" build number 37901:03:03[OMERO-build] $ /bin/bash -xe /tmp/jenkins4141581051934510284.sh
01:03:03+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
01:03:03+ cd src
01:03:03+ export OMERO_BRANCH=merge_ci
01:03:03+ OMERO_BRANCH=merge_ci
01:03:03+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:03:03+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:03:03+ source /home/omero/settings.env
01:03:03++ OMERO_DB_HOST=pg
01:03:03++ OMERO_DB_USER=postgres
01:03:03++ OMERO_DB_PASS=
01:03:03++ OMERO_ROOT_PASS=omero
01:03:03++ OMERO_DATA_DIR=/OMERO
01:03:03++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:03:03+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:03:07+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl01:03:07Collecting zeroc-ice==3.6.5
01:03:08 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:03:10 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 7.1 MB/s eta 0:00:00
01:03:11Installing collected packages: zeroc-ice
01:03:11Successfully installed zeroc-ice-3.6.5
01:03:1201:03:12[notice] A new release of pip available: 22.3.1 -> 25.0.1
01:03:12[notice] To update, run: python3.11 -m pip install --upgrade pip
01:03:12+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:03:12Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:03:12Collecting setuptools<66
01:03:12 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:03:12Collecting omero-py
01:03:12 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
01:03:13Collecting urllib3<2
01:03:13 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
01:03:13Collecting appdirs
01:03:13 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:03:13Collecting future
01:03:13 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:03:13Collecting numpy<3
01:03:13 Downloading numpy-2.2.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB)
01:03:14 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.4/16.4 MB 22.1 MB/s eta 0:00:00
01:03:14Collecting Pillow>=10.0.0
01:03:14 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
01:03:15Collecting PyYAML
01:03:15 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
01:03:15Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:03:15Collecting requests
01:03:15 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
01:03:15Collecting portalocker
01:03:15 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
01:03:15Collecting charset-normalizer<4,>=2
01:03:15 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB)
01:03:15Collecting idna<4,>=2.5
01:03:15 Using cached idna-3.10-py3-none-any.whl (70 kB)
01:03:15Collecting certifi>=2017.4.17
01:03:15 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB)
01:03:15Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py
01:03:15 Attempting uninstall: setuptools
01:03:15 Found existing installation: setuptools 65.5.1
01:03:15 Uninstalling setuptools-65.5.1:
01:03:15 Successfully uninstalled setuptools-65.5.1
01:03:21Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.1.31 charset-normalizer-3.4.1 future-1.0.0 idna-3.10 numpy-2.2.5 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20
01:03:2101:03:21[notice] A new release of pip available: 22.3.1 -> 25.0.1
01:03:21[notice] To update, run: python3.11 -m pip install --upgrade pip
01:03:21+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:03:21++ deactivate nondestructive
01:03:21++ '[' -n '' ']'
01:03:21++ '[' -n '' ']'
01:03:21++ hash -r
01:03:21++ '[' -n '' ']'
01:03:21++ unset VIRTUAL_ENV
01:03:21++ unset VIRTUAL_ENV_PROMPT
01:03:21++ '[' '!' nondestructive = nondestructive ']'
01:03:21++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:03:21++ export VIRTUAL_ENV
01:03:21++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:03:21++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:03:21++ export PATH
01:03:21++ '[' -n '' ']'
01:03:21++ '[' -z '' ']'
01:03:21++ _OLD_VIRTUAL_PS1=
01:03:21++ PS1='(omero-virtualenv) '
01:03:21++ export PS1
01:03:21++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:03:21++ export VIRTUAL_ENV_PROMPT
01:03:21++ hash -r
01:03:21+ source docs/hudson/OMERO.sh
01:03:21++ set -e
01:03:21++ set -u
01:03:21++ set -x
01:03:21++ source docs/hudson/functions.sh
01:03:21++ echo Building merge_ci
01:03:21Building merge_ci
01:03:21++ python3 ./build.py build-dev release-all
01:03:21Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:03:2201:03:22check-ivy:
01:03:22Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:03:22Created dir: /home/omero/workspace/OMERO-build/src/target
01:03:22:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:03:22:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:03:2201:03:22build-scons:
01:03:22Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:03:22No sub-builds to iterate on
01:03:23Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:03:2301:03:23buildlist:
01:03:23:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:03:23:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:03:2301:03:23clean:
01:03:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:03:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:03:2301:03:23python-clean:
01:03:23WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:03:23/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-9639368fdd-ice36-b387') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:03:23 warnings.warn(
01:03:23running clean
01:03:23Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:03:23Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:03:2401:03:24python-clean:
01:03:24WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:03:24/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-9639368fdd-ice36-b387') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:03:24 warnings.warn(
01:03:24running clean
01:03:24Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:03:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:03:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:03:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:03:2401:03:24python-clean:
01:03:24WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:03:24/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-9639368fdd-ice36-b387') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:03:24 warnings.warn(
01:03:24running clean
01:03:24Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:03:24Deleting directory /home/omero/workspace/OMERO-build/src/target
01:03:2401:03:24build-scons:
01:03:24Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:03:2401:03:24build:
01:03:24No sub-builds to iterate on
01:03:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:03:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:03:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:03:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:03:2401:03:24tools-init:
01:03:24no-op
01:03:2501:03:25retrieve:
01:03:25:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:03:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:03:25WARNING: An illegal reflective access operation has occurred
01:03:25WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
01:03:25WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
01:03:25WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
01:03:25WARNING: All illegal access operations will be denied in a future release
01:03:4001:03:40prepare:
01:03:40Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:03:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:03:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:03:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:03:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:03:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:03:40Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:03:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:03:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:03:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:03:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:03:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:03:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:03:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:03:40Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:03:4001:03:40pre-compile:
01:03:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:03:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:03:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:03:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:03:40Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:03:4001:03:40compile:
01:03:40no-op
01:03:4001:03:40package:
01:03:40Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:03:4101:03:41install:
01:03:41:: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-9639368fdd-ice36-b387 :: integration :: Sun Apr 20 01:03:24 UTC 2025
01:03:41 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:03:41:: publishing :: omero#omero_client
01:03:41 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-9639368fdd-ice36-b387/omero_client-5.6.3-552-9639368fdd-ice36-b387.jar
01:03:41 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-9639368fdd-ice36-b387/omero_client-5.6.3-552-9639368fdd-ice36-b387.xml
01:03:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:03:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:03:4101:03:41retrieve:
01:03:41:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:03:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:03:41Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:03:4101:03:41dist:
01:03:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:03:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:03:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:03:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:03:41Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:03:41Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:03:41Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:03:41Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:03:42Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:03:4201:03:42copy-licenses:
01:03:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:03:42Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:03:42Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:03:4201:03:42copy-history:
01:03:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:03:4201:03:42copy-etc:
01:03:42Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:03:42Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:03:4201:03:42copy-sql:
01:03:42Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:03:4701:03:47copy-server:
01:03:47 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
01:03:4701:03:47copy-client:
01:03:47Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:03:49 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
01:03:4901:03:49update-version:
01:03:49Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:03:4901:03:49create-workdirs:
01:03:49Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:03:49Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:03:4901:03:49copy-luts:
01:03:49Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:03:49Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:03:4901:03:49test-compile:
01:03:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:03:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:03:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:03:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:03:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:03:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:03:49Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:03:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:03:5001:03:50testng-init:
01:03:50:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:03:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:03:5201:03:52,524 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
01:03:5201:03:52,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - No custom configurators were discovered as a service.
01:03:5201:03:52,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:03:5201:03:52,530 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:03:5201:03:52,531 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:03:5201:03:52,531 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:03:5201:03:52,532 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:03:5201:03:52,532 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:03:5201:03:52,534 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:03:5201:03:52,534 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:03:5201:03:52,534 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:03:5201:03:52,535 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs multiple times on the classpath.
01:03:5201:03:52,535 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:03:5201:03:52,535 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9ad451 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:03:5201:03:52,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:03:5201:03:52,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:03:5201:03:52,755 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:03:5201:03:52,756 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:03:5201:03:52,756 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - Please move "immediateFlush" property into the enclosing appender.
01:03:5201:03:52,819 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@78682201 - Setting the "immediateFlush" property of the enclosing appender to true
01:03:5201:03:52,820 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:03:5201:03:52,820 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:03:5201:03:52,820 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:03:5201:03:52,820 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:03:5201:03:52,820 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:03:5201:03:52,820 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:03:5201:03:52,821 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7d7a0e06 - End of configuration.
01:03:5201:03:52,823 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2c3f9229 - Registering current configuration as safe fallback point
01:03:5201:03:52,823 |-INFO in ch.qos.logback.classic.util.ContextInitializer@10683f87 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 289 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:03:5201:03:52lifecycle.test-compile:
01:03:52Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:03:52Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:03:53warning: [options] bootstrap class path not set in conjunction with -source 8
01:03:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:03:54import omero.grid.RawAccessRequest;
01:03:54 ^
01:03:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:03:54import omero.grid.RawAccessRequest;
01:03:54 ^
01:03:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:03:54import omero.grid.RawAccessRequest;
01:03:54 ^
01:03:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:03:54import omero.model.ImportJob;
01:03:54 ^
01:03:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:03:54import omero.model.ImportJobI;
01:03:54 ^
01:03:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:03:55 IObject link = (IObject) linkClass.newInstance();
01:03:55 ^
01:03:55 where T is a type-variable:
01:03:55 T extends Object declared in class Class
01:03:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:03:55 T copy = (T) obj.getClass().newInstance();
01:03:55 ^
01:03:55 where T is a type-variable:
01:03:55 T extends Object declared in class Class
01:03:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:03:55 RawAccessRequest raw = new RawAccessRequest();
01:03:55 ^
01:03:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:03:55 RawAccessRequest raw = new RawAccessRequest();
01:03:55 ^
01:03:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:03:55 raw.repoUuid = legacy.root().getHash().getValue();
01:03:55 ^
01:03:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:03:55 raw.command = "rm";
01:03:55 ^
01:03:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:03:55 raw.args = Arrays.asList(path);
01:03:55 ^
01:03:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:03:55 final IObject link = linkClass.newInstance();
01:03:55 ^
01:03:55 where T is a type-variable:
01:03:55 T extends Object declared in class Class
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:03:56 originalLink.setChild(annotationClass.newInstance());
01:03:56 ^
01:03:56 where T is a type-variable:
01:03:56 T extends Object declared in class Class
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:03:56 RoiResult r = svc.findByImage(id, new RoiOptions());
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:03:56 final RawAccessRequest request = new RawAccessRequest();
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:03:56 final RawAccessRequest request = new RawAccessRequest();
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:03:56 request.repoUuid = repo.root().getHash().getValue();
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:03:56 request.command = "exists";
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:03:56 request.args = Collections.singletonList(dirPath);
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:03:56 final RawAccessRequest request = new RawAccessRequest();
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:03:56 final RawAccessRequest request = new RawAccessRequest();
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:03:56 request.repoUuid = repo.root().getHash().getValue();
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:03:56 request.command = "exists";
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:03:56 request.args = Collections.singletonList(dirName);
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:03:56 final ImportJob importJob = new ImportJobI();
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:03:56 final ImportJob importJob = new ImportJobI();
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:03:56 importJob.setImageName(omero.rtypes.rstring(name));
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:03:56 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:03:56 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:03:56 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:03:56 final String savedName = sent.getImageName().getValue().toString();
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:03:56 final String savedDesc = sent.getImageDescription().getValue().toString();
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:03:56 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:03:56 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:03:56 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:03:56 ^
01:03:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:03:56 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:03:56 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:03:57 RoiResult r = svc.findByImage(image.getId().getValue(),
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:03:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:03:57 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:03:57 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:03:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:03:57 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:03:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:03:57 table = svc.getTable(f.getId().getValue());
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:03:57 RoiResult r = svc.findByImage(image.getId().getValue(),
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:03:57 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:03:57 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:03:57 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:03:57 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:03:57 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:03:57 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:03:57 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:03:57 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
01:03:57 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:03:57 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:03:57 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:03:57 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:03:57 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:03:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:03:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:03:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:03:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:03:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:03:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:03:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:03:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:03:57 svc.getShapeStatsRestricted(
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:03:57 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:03:57 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:03:57 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:03:57 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:03:57 request.typesToIgnore = Collections.singletonList("Annotation");
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:03:57 request.typesToIgnore = Collections.singletonList("Annotation");
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:03:57 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:03:57 p2.setRelatedTo(p1);
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:03:57 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:03:57 pixels1.setRelatedTo(pixels2);
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:03:57 Pixels pixels = pixels1.getRelatedTo();
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:03:57 Assert.assertNull(pixels1.getRelatedTo());
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:03:57 pixels1.setRelatedTo(pixels2);
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:03:57 Pixels pixels = pixels1.getRelatedTo();
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:03:57 Assert.assertNull(pixels1.getRelatedTo());
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:03:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:03:57 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:03:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:03:57 ^
01:03:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:03:57 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:03:57 ^
01:03:57Note: Some input files use unchecked or unsafe operations.
01:03:57Note: Recompile with -Xlint:unchecked for details.
01:03:5788 warnings
01:03:57Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1547255816.tmp
01:03:57Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:03:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:03:57:: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-9639368fdd-ice36-b387 :: integration :: Sun Apr 20 01:03:49 UTC 2025
01:03:57 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:03:57:: publishing :: omero#OmeroJava-test
01:03:57 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-9639368fdd-ice36-b387.jar
01:03:57 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-9639368fdd-ice36-b387.xml
01:03:5701:03:57build-eclipse:
01:03:57No sub-builds to iterate on
01:03:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:03:5801:03:58retrieve:
01:03:58:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:03:58:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:04:0001:04:00prepare:
01:04:00Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:04:0101:04:01release-clients:
01:04:01Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-9639368fdd-ice36-b387.zip
01:04:0801:04:08release-zip:
01:04:08Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-9639368fdd-ice36-b387.zip
01:04:2101:04:21BUILD SUCCESSFUL
01:04:21Total time: 1 minute 0 seconds
01:04:21++ '[' -d .git ']'
01:04:21++ python3 ./build.py release-src
01:04:21Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:04:2201:04:22release-src-git:
01:04:22Releasing openmicroscopy-5.6.3-552-9639368fdd-ice36-b387
01:04:23 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-9639368fdd-ice36-b387.zip
01:04:23 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-9639368fdd-ice36-b387-base.zip
01:04:2501:04:25BUILD SUCCESSFUL
01:04:25Total time: 3 seconds
01:04:25++ echo BUILD_NUMBER=387
01:04:25++ echo OMERO_BRANCH=merge_ci
01:04:25++ git_info
01:04:25+++ git rev-parse HEAD
01:04:25++ HEAD=9639368fdd5e9d5eb9507ddc5cde3278af73506c
01:04:25++ git log --max-count=1 9639368fdd5e9d5eb9507ddc5cde3278af73506c
01:04:25++ env
01:04:25++ sort
01:04:25Archiving artifacts
01:04:54Finished: SUCCESS
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