00:56:57Started by upstream project "Trigger" build number 45000:56:57originally caused by:
00:56:57 Started by timer
00:56:57Running as SYSTEM
00:56:57Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:56:57The recommended git tool is: NONE
00:56:57No credentials specified
00:56:57 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:56:57Fetching changes from the remote Git repository
00:56:57 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:56:57Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:56:57 > git --version # timeout=10
00:56:57 > git --version # 'git version 2.43.5'
00:56:57 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:56:58 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:56:58Checking out Revision 8dfffddce76c1d5ceebf836573f04b3edc1d16b7 (origin/merge_ci)
00:56:58 > git config core.sparsecheckout # timeout=10
00:56:58 > git checkout -f 8dfffddce76c1d5ceebf836573f04b3edc1d16b7 # timeout=10
00:56:58Commit message: "Add version.properties to etc/omero.properties"
00:56:58 > git rev-list --no-walk 769b841d6b020355080e686b35a7a40415072646 # timeout=10
00:56:58Cleaning workspace
00:56:58 > git rev-parse --verify HEAD # timeout=10
00:56:58Resetting working tree
00:56:58 > git reset --hard # timeout=10
00:56:58 > git clean -fdx # timeout=10
00:56:58Copied 6 artifacts from "OMERO-python-superbuild-build" build number 38300:56:58[OMERO-build] $ /bin/bash -xe /tmp/jenkins2219016488018608642.sh
00:56:58+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
00:56:58+ cd src
00:56:58+ export OMERO_BRANCH=merge_ci
00:56:58+ OMERO_BRANCH=merge_ci
00:56:58+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:56:58+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:56:58+ source /home/omero/settings.env
00:56:58++ OMERO_DB_HOST=pg
00:56:58++ OMERO_DB_USER=postgres
00:56:58++ OMERO_DB_PASS=
00:56:58++ OMERO_ROOT_PASS=omero
00:56:58++ OMERO_DATA_DIR=/OMERO
00:56:58++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:56:58+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:57:02+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:57:02Collecting zeroc-ice==3.6.5
00:57:03 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:57:05 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.1 MB/s eta 0:00:00
00:57:05Installing collected packages: zeroc-ice
00:57:06Successfully installed zeroc-ice-3.6.5
00:57:0600:57:06[notice] A new release of pip available: 22.3.1 -> 25.0.1
00:57:06[notice] To update, run: python3.11 -m pip install --upgrade pip
00:57:06+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:57:06Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:57:06Collecting setuptools<66
00:57:06 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:57:06Collecting omero-py
00:57:06 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
00:57:07Collecting urllib3<2
00:57:07 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:57:07Collecting appdirs
00:57:07 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:57:07Collecting future
00:57:07 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:57:07Collecting numpy<3
00:57:07 Using cached numpy-2.2.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB)
00:57:08Collecting Pillow>=10.0.0
00:57:08 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
00:57:08Collecting PyYAML
00:57:08 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:57:08Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:57:08Collecting requests
00:57:08 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
00:57:08Collecting portalocker
00:57:08 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
00:57:08Collecting charset-normalizer<4,>=2
00:57:08 Using cached charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB)
00:57:08Collecting idna<4,>=2.5
00:57:08 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:57:08Collecting certifi>=2017.4.17
00:57:08 Using cached certifi-2025.1.31-py3-none-any.whl (166 kB)
00:57:08Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py
00:57:08 Attempting uninstall: setuptools
00:57:08 Found existing installation: setuptools 65.5.1
00:57:08 Uninstalling setuptools-65.5.1:
00:57:09 Successfully uninstalled setuptools-65.5.1
00:57:14Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.1.31 charset-normalizer-3.4.1 future-1.0.0 idna-3.10 numpy-2.2.5 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20
00:57:1400:57:14[notice] A new release of pip available: 22.3.1 -> 25.0.1
00:57:14[notice] To update, run: python3.11 -m pip install --upgrade pip
00:57:14+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:57:14++ deactivate nondestructive
00:57:14++ '[' -n '' ']'
00:57:14++ '[' -n '' ']'
00:57:14++ hash -r
00:57:14++ '[' -n '' ']'
00:57:14++ unset VIRTUAL_ENV
00:57:14++ unset VIRTUAL_ENV_PROMPT
00:57:14++ '[' '!' nondestructive = nondestructive ']'
00:57:14++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:57:14++ export VIRTUAL_ENV
00:57:14++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:57:14++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:57:14++ export PATH
00:57:14++ '[' -n '' ']'
00:57:14++ '[' -z '' ']'
00:57:14++ _OLD_VIRTUAL_PS1=
00:57:14++ PS1='(omero-virtualenv) '
00:57:14++ export PS1
00:57:14++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:57:14++ export VIRTUAL_ENV_PROMPT
00:57:14++ hash -r
00:57:14+ source docs/hudson/OMERO.sh
00:57:14++ set -e
00:57:14++ set -u
00:57:14++ set -x
00:57:14++ source docs/hudson/functions.sh
00:57:14++ echo Building merge_ci
00:57:14Building merge_ci
00:57:14++ python3 ./build.py build-dev release-all
00:57:14Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:57:1500:57:15check-ivy:
00:57:15Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:57:15Created dir: /home/omero/workspace/OMERO-build/src/target
00:57:15:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:57:15:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:57:1500:57:15build-scons:
00:57:15Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:57:15No sub-builds to iterate on
00:57:15Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:57:1600:57:16buildlist:
00:57:16:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:57:16:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:57:1600:57:16clean:
00:57:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:57:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:57:1600:57:16python-clean:
00:57:16WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:57:16/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-8dfffddce7-ice36-b391') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:57:16 warnings.warn(
00:57:16running clean
00:57:16Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:57:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:57:1700:57:17python-clean:
00:57:17WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:57:17/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-8dfffddce7-ice36-b391') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:57:17 warnings.warn(
00:57:17running clean
00:57:17Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:57:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:57:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:57:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:57:1700:57:17python-clean:
00:57:17WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:57:17/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-8dfffddce7-ice36-b391') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:57:17 warnings.warn(
00:57:17running clean
00:57:17Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:57:17Deleting directory /home/omero/workspace/OMERO-build/src/target
00:57:1700:57:17build-scons:
00:57:17Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:57:1700:57:17build:
00:57:17No sub-builds to iterate on
00:57:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:57:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:57:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:57:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:57:1700:57:17tools-init:
00:57:17no-op
00:57:1800:57:18retrieve:
00:57:18:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:57:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:57:18WARNING: An illegal reflective access operation has occurred
00:57:18WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:57:18WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:57:18WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:57:18WARNING: All illegal access operations will be denied in a future release
00:57:2900:57:29prepare:
00:57:29Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:57:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:57:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:57:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:57:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:57:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:57:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:57:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:57:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:57:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:57:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:57:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:57:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:57:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:57:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:57:2900:57:29pre-compile:
00:57:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:57:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:57:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:57:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:57:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:57:2900:57:29compile:
00:57:29no-op
00:57:2900:57:29package:
00:57:29Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:57:3000:57:30install:
00:57:30:: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-8dfffddce7-ice36-b391 :: integration :: Thu Apr 24 00:57:17 UTC 2025
00:57:30 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:57:30:: publishing :: omero#omero_client
00:57:30 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-8dfffddce7-ice36-b391/omero_client-5.6.3-552-8dfffddce7-ice36-b391.jar
00:57:30 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-8dfffddce7-ice36-b391/omero_client-5.6.3-552-8dfffddce7-ice36-b391.xml
00:57:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:57:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:57:3000:57:30retrieve:
00:57:30:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:57:30:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:57:31Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:57:3100:57:31dist:
00:57:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:57:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:57:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:57:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:57:31Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:57:31Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:57:31Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:57:31Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:57:31Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:57:3100:57:31copy-licenses:
00:57:31Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:57:31Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:57:31Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:57:3100:57:31copy-history:
00:57:31Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:57:3100:57:31copy-etc:
00:57:31Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:57:31Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:57:3100:57:31copy-sql:
00:57:31Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:57:3600:57:36copy-server:
00:57:36 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:57:3600:57:36copy-client:
00:57:36Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:57:37 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:57:3700:57:37update-version:
00:57:37Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:57:3700:57:37create-workdirs:
00:57:37Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:57:37Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:57:3700:57:37copy-luts:
00:57:37Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:57:37Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:57:3700:57:37test-compile:
00:57:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:57:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:57:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:57:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:57:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:57:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:57:37Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:57:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:57:3800:57:38testng-init:
00:57:38:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:57:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:57:4300:57:43,628 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
00:57:4300:57:43,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7d7a0e06 - No custom configurators were discovered as a service.
00:57:4300:57:43,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7d7a0e06 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:57:4300:57:43,635 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7d7a0e06 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:57:4300:57:43,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:57:4300:57:43,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:57:4300:57:43,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7d7a0e06 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:57:4300:57:43,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7d7a0e06 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:57:4300:57:43,638 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7d7a0e06 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:57:4300:57:43,638 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:57:4300:57:43,638 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:57:4300:57:43,639 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2c3f9229 - Resource [logback.xml] occurs multiple times on the classpath.
00:57:4300:57:43,639 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2c3f9229 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:57:4300:57:43,639 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@2c3f9229 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:57:4300:57:43,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:57:4300:57:43,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:57:4300:57:43,858 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:57:4300:57:43,860 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@abe3a3 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:57:4300:57:43,860 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@abe3a3 - Please move "immediateFlush" property into the enclosing appender.
00:57:4300:57:43,921 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@abe3a3 - Setting the "immediateFlush" property of the enclosing appender to true
00:57:4300:57:43,922 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:57:4300:57:43,922 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:57:4300:57:43,922 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:57:4300:57:43,922 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:57:4300:57:43,922 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:57:4300:57:43,922 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:57:4300:57:43,924 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@396ab19d - End of configuration.
00:57:4300:57:43,926 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@14cd9288 - Registering current configuration as safe fallback point
00:57:4300:57:43,926 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7d7a0e06 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 288 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:57:4300:57:43lifecycle.test-compile:
00:57:43Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:57:43Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:57:44warning: [options] bootstrap class path not set in conjunction with -source 8
00:57:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:45import omero.grid.RawAccessRequest;
00:57:45 ^
00:57:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:45import omero.grid.RawAccessRequest;
00:57:45 ^
00:57:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:45import omero.grid.RawAccessRequest;
00:57:45 ^
00:57:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:57:45import omero.model.ImportJob;
00:57:45 ^
00:57:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:57:45import omero.model.ImportJobI;
00:57:45 ^
00:57:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:57:46 IObject link = (IObject) linkClass.newInstance();
00:57:46 ^
00:57:46 where T is a type-variable:
00:57:46 T extends Object declared in class Class
00:57:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:57:46 T copy = (T) obj.getClass().newInstance();
00:57:46 ^
00:57:46 where T is a type-variable:
00:57:46 T extends Object declared in class Class
00:57:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:46 RawAccessRequest raw = new RawAccessRequest();
00:57:46 ^
00:57:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:46 RawAccessRequest raw = new RawAccessRequest();
00:57:46 ^
00:57:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:57:46 raw.repoUuid = legacy.root().getHash().getValue();
00:57:46 ^
00:57:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:57:46 raw.command = "rm";
00:57:46 ^
00:57:46/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:57:46 raw.args = Arrays.asList(path);
00:57:46 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:57:47 final IObject link = linkClass.newInstance();
00:57:47 ^
00:57:47 where T is a type-variable:
00:57:47 T extends Object declared in class Class
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:57:47 originalLink.setChild(annotationClass.newInstance());
00:57:47 ^
00:57:47 where T is a type-variable:
00:57:47 T extends Object declared in class Class
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:57:47 RoiResult r = svc.findByImage(id, new RoiOptions());
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:47 final RawAccessRequest request = new RawAccessRequest();
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:47 final RawAccessRequest request = new RawAccessRequest();
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:57:47 request.repoUuid = repo.root().getHash().getValue();
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:57:47 request.command = "exists";
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:57:47 request.args = Collections.singletonList(dirPath);
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:47 final RawAccessRequest request = new RawAccessRequest();
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:57:47 final RawAccessRequest request = new RawAccessRequest();
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:57:47 request.repoUuid = repo.root().getHash().getValue();
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:57:47 request.command = "exists";
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:57:47 request.args = Collections.singletonList(dirName);
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:57:47 final ImportJob importJob = new ImportJobI();
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:57:47 final ImportJob importJob = new ImportJobI();
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:57:47 importJob.setImageName(omero.rtypes.rstring(name));
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:57:47 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:57:47 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:57:47 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:57:47 final String savedName = sent.getImageName().getValue().toString();
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:57:47 final String savedDesc = sent.getImageDescription().getValue().toString();
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:57:47 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:57:47 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:57:47 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:57:47 ^
00:57:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:57:47 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:57:47 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:57:48 RoiResult r = svc.findByImage(image.getId().getValue(),
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:57:48 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:57:48 table = svc.getTable(f.getId().getValue());
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:57:48 RoiResult r = svc.findByImage(image.getId().getValue(),
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:57:48 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:57:48 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:57:48 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:57:48 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:48 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:48 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:48 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:48 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:57:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:48 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:48 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:57:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:57:48 svc.getShapeStatsRestricted(
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:57:48 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:57:48 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:57:48 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:57:48 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:57:48 request.typesToIgnore = Collections.singletonList("Annotation");
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:57:48 request.typesToIgnore = Collections.singletonList("Annotation");
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:57:48 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:57:48 p2.setRelatedTo(p1);
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:57:48 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:57:48 pixels1.setRelatedTo(pixels2);
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:57:48 Pixels pixels = pixels1.getRelatedTo();
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:57:48 Assert.assertNull(pixels1.getRelatedTo());
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:57:48 pixels1.setRelatedTo(pixels2);
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:57:48 Pixels pixels = pixels1.getRelatedTo();
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:57:48 Assert.assertNull(pixels1.getRelatedTo());
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:57:48 ^
00:57:48/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:57:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:57:48 ^
00:57:48Note: Some input files use unchecked or unsafe operations.
00:57:48Note: Recompile with -Xlint:unchecked for details.
00:57:4888 warnings
00:57:48Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1502014621.tmp
00:57:48Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:57:48:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:57:49:: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-8dfffddce7-ice36-b391 :: integration :: Thu Apr 24 00:57:37 UTC 2025
00:57:49 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:57:49:: publishing :: omero#OmeroJava-test
00:57:49 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-8dfffddce7-ice36-b391.jar
00:57:49 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-8dfffddce7-ice36-b391.xml
00:57:4900:57:49build-eclipse:
00:57:49No sub-builds to iterate on
00:57:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:57:4900:57:49retrieve:
00:57:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:57:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:57:5100:57:51prepare:
00:57:51Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:57:5200:57:52release-clients:
00:57:52Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-8dfffddce7-ice36-b391.zip
00:57:5900:57:59release-zip:
00:57:59Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-8dfffddce7-ice36-b391.zip
00:58:1300:58:13BUILD SUCCESSFUL
00:58:13Total time: 58 seconds
00:58:13++ '[' -d .git ']'
00:58:13++ python3 ./build.py release-src
00:58:13Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:58:1300:58:13release-src-git:
00:58:13Releasing openmicroscopy-5.6.3-552-8dfffddce7-ice36-b391
00:58:15 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-8dfffddce7-ice36-b391.zip
00:58:15 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-8dfffddce7-ice36-b391-base.zip
00:58:1600:58:16BUILD SUCCESSFUL
00:58:16Total time: 3 seconds
00:58:16++ echo BUILD_NUMBER=391
00:58:16++ echo OMERO_BRANCH=merge_ci
00:58:16++ git_info
00:58:16+++ git rev-parse HEAD
00:58:16++ HEAD=8dfffddce76c1d5ceebf836573f04b3edc1d16b7
00:58:16++ git log --max-count=1 8dfffddce76c1d5ceebf836573f04b3edc1d16b7
00:58:16++ sort
00:58:16++ env
00:58:16Archiving artifacts
00:58:45Finished: SUCCESS
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