00:37:59Started by upstream project "Trigger" build number 47600:37:59originally caused by:
00:37:59 Started by timer
00:37:59Running as SYSTEM
00:37:59Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:37:59The recommended git tool is: NONE
00:37:59No credentials specified
00:37:59 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:37:59Fetching changes from the remote Git repository
00:37:59 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:37:59Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:37:59 > git --version # timeout=10
00:37:59 > git --version # 'git version 2.43.5'
00:37:59 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:37:59 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:37:59Checking out Revision 267fc4a0e805d71a971171757951fbda1e8e06a9 (origin/merge_ci)
00:37:59 > git config core.sparsecheckout # timeout=10
00:37:59 > git checkout -f 267fc4a0e805d71a971171757951fbda1e8e06a9 # timeout=10
00:37:59Commit message: "Add version.properties to etc/omero.properties"
00:37:59 > git rev-list --no-walk a7de682d88a45ff7a242a960d678be781cb620d2 # timeout=10
00:38:00Cleaning workspace
00:38:00 > git rev-parse --verify HEAD # timeout=10
00:38:00Resetting working tree
00:38:00 > git reset --hard # timeout=10
00:38:00 > git clean -fdx # timeout=10
00:38:00Copied 6 artifacts from "OMERO-python-superbuild-build" build number 40200:38:00[OMERO-build] $ /bin/bash -xe /tmp/jenkins13350277103260407452.sh
00:38:00+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
00:38:00+ cd src
00:38:00+ export OMERO_BRANCH=merge_ci
00:38:00+ OMERO_BRANCH=merge_ci
00:38:00+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:38:00+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:38:00+ source /home/omero/settings.env
00:38:00++ OMERO_DB_HOST=pg
00:38:00++ OMERO_DB_USER=postgres
00:38:00++ OMERO_DB_PASS=
00:38:00++ OMERO_ROOT_PASS=omero
00:38:00++ OMERO_DATA_DIR=/OMERO
00:38:00++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:38:00+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:38:04+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:38:04Collecting zeroc-ice==3.6.5
00:38:05 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:38:06 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.5 MB/s eta 0:00:00
00:38:07Installing collected packages: zeroc-ice
00:38:08Successfully installed zeroc-ice-3.6.5
00:38:0800:38:08[notice] A new release of pip available: 22.3.1 -> 25.1.1
00:38:08[notice] To update, run: python3.11 -m pip install --upgrade pip
00:38:08+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:38:08Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:38:08Collecting setuptools<66
00:38:08 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:38:09Collecting omero-py
00:38:09 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
00:38:09Collecting urllib3<2
00:38:09 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:38:09Collecting appdirs
00:38:09 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:38:09Collecting future
00:38:09 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:38:09Collecting numpy<3
00:38:09 Using cached numpy-2.2.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB)
00:38:10Collecting Pillow>=10.0.0
00:38:10 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
00:38:10Collecting PyYAML
00:38:10 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:38:10Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:38:10Collecting requests
00:38:10 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
00:38:10Collecting portalocker
00:38:10 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
00:38:11Collecting charset-normalizer<4,>=2
00:38:11 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
00:38:11Collecting idna<4,>=2.5
00:38:11 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:38:11Collecting certifi>=2017.4.17
00:38:11 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB)
00:38:11Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py
00:38:11 Attempting uninstall: setuptools
00:38:11 Found existing installation: setuptools 65.5.1
00:38:11 Uninstalling setuptools-65.5.1:
00:38:11 Successfully uninstalled setuptools-65.5.1
00:38:17Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset-normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.2.5 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20
00:38:1700:38:17[notice] A new release of pip available: 22.3.1 -> 25.1.1
00:38:17[notice] To update, run: python3.11 -m pip install --upgrade pip
00:38:17+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:38:17++ deactivate nondestructive
00:38:17++ '[' -n '' ']'
00:38:17++ '[' -n '' ']'
00:38:17++ hash -r
00:38:17++ '[' -n '' ']'
00:38:17++ unset VIRTUAL_ENV
00:38:17++ unset VIRTUAL_ENV_PROMPT
00:38:17++ '[' '!' nondestructive = nondestructive ']'
00:38:17++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:38:17++ export VIRTUAL_ENV
00:38:17++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:38:17++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:38:17++ export PATH
00:38:17++ '[' -n '' ']'
00:38:17++ '[' -z '' ']'
00:38:17++ _OLD_VIRTUAL_PS1=
00:38:17++ PS1='(omero-virtualenv) '
00:38:17++ export PS1
00:38:17++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:38:17++ export VIRTUAL_ENV_PROMPT
00:38:17++ hash -r
00:38:17+ source docs/hudson/OMERO.sh
00:38:17++ set -e
00:38:17++ set -u
00:38:17++ set -x
00:38:17++ source docs/hudson/functions.sh
00:38:17++ echo Building merge_ci
00:38:17Building merge_ci
00:38:17++ python3 ./build.py build-dev release-all
00:38:17Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:38:1700:38:17check-ivy:
00:38:17Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:38:17Created dir: /home/omero/workspace/OMERO-build/src/target
00:38:18:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:1800:38:18build-scons:
00:38:18Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:38:18No sub-builds to iterate on
00:38:18Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:38:1800:38:18buildlist:
00:38:18:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:1900:38:19clean:
00:38:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:1900:38:19python-clean:
00:38:19WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:38:19/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-267fc4a0e8-ice36-b410') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:38:19 warnings.warn(
00:38:19running clean
00:38:19Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:38:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:38:1900:38:19python-clean:
00:38:19WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:38:19/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-267fc4a0e8-ice36-b410') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:38:19 warnings.warn(
00:38:19running clean
00:38:19Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:38:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:38:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:2000:38:20python-clean:
00:38:20WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:38:20/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-267fc4a0e8-ice36-b410') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:38:20 warnings.warn(
00:38:20running clean
00:38:20Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:38:20Deleting directory /home/omero/workspace/OMERO-build/src/target
00:38:2000:38:20build-scons:
00:38:20Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:38:2000:38:20build:
00:38:20No sub-builds to iterate on
00:38:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:38:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:38:2000:38:20tools-init:
00:38:20no-op
00:38:2000:38:20retrieve:
00:38:20:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:21WARNING: An illegal reflective access operation has occurred
00:38:21WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:38:21WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:38:21WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:38:21WARNING: All illegal access operations will be denied in a future release
00:38:3600:38:36prepare:
00:38:36Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:38:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:38:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:38:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:38:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:38:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:38:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:38:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:38:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:38:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:38:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:38:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:38:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:38:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:38:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:38:3600:38:36pre-compile:
00:38:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:38:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:38:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:38:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:38:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:38:3700:38:37compile:
00:38:37no-op
00:38:3700:38:37package:
00:38:37Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:38:3700:38:37install:
00:38:37:: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-267fc4a0e8-ice36-b410 :: integration :: Tue May 13 00:38:20 UTC 2025
00:38:37 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:38:37:: publishing :: omero#omero_client
00:38:37 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-267fc4a0e8-ice36-b410/omero_client-5.6.3-552-267fc4a0e8-ice36-b410.jar
00:38:37 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-267fc4a0e8-ice36-b410/omero_client-5.6.3-552-267fc4a0e8-ice36-b410.xml
00:38:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:3800:38:38retrieve:
00:38:38:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:38Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:38:3800:38:38dist:
00:38:38Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:38:38Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:38:38Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:38:38Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:38:40Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:38:40Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:38:40Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:38:40Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:38:40Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:38:4000:38:40copy-licenses:
00:38:40Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:38:40Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:38:40Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:38:4000:38:40copy-history:
00:38:40Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:38:4000:38:40copy-etc:
00:38:40Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:38:40Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:38:4000:38:40copy-sql:
00:38:40Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:38:4600:38:46copy-server:
00:38:46 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:38:4600:38:46copy-client:
00:38:46Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:38:47 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:38:4700:38:47update-version:
00:38:47Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:38:4700:38:47create-workdirs:
00:38:47Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:38:47Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:38:4700:38:47copy-luts:
00:38:47Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:38:47Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:38:4700:38:47test-compile:
00:38:47:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:38:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:38:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:47Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:38:48Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:38:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:38:4800:38:48testng-init:
00:38:48:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:48:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:5100:38:50,990 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
00:38:5100:38:50,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e2f1454 - No custom configurators were discovered as a service.
00:38:5100:38:50,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e2f1454 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:38:5100:38:50,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e2f1454 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:38:5100:38:50,996 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:38:5100:38:50,997 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:38:5100:38:50,997 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e2f1454 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:38:5100:38:50,997 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e2f1454 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:38:5100:38:50,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e2f1454 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:38:5100:38:50,999 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:38:5100:38:51,000 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:38:5100:38:51,001 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@35b1e5e5 - Resource [logback.xml] occurs multiple times on the classpath.
00:38:5100:38:51,001 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@35b1e5e5 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:38:5100:38:51,001 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@35b1e5e5 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:38:5100:38:51,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:38:5100:38:51,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:38:5100:38:51,221 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:38:5100:38:51,223 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7caf0725 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:38:5100:38:51,223 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7caf0725 - Please move "immediateFlush" property into the enclosing appender.
00:38:5100:38:51,285 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7caf0725 - Setting the "immediateFlush" property of the enclosing appender to true
00:38:5100:38:51,286 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:38:5100:38:51,286 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:38:5100:38:51,286 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:38:5100:38:51,286 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:38:5100:38:51,286 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:38:5100:38:51,286 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:38:5100:38:51,287 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@644acaff - End of configuration.
00:38:5100:38:51,289 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6241ef96 - Registering current configuration as safe fallback point
00:38:5100:38:51,289 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7e2f1454 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 290 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:38:5100:38:51lifecycle.test-compile:
00:38:51Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:38:51Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:38:51warning: [options] bootstrap class path not set in conjunction with -source 8
00:38:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:38:52import omero.grid.RawAccessRequest;
00:38:52 ^
00:38:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:38:53import omero.grid.RawAccessRequest;
00:38:53 ^
00:38:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:38:53import omero.grid.RawAccessRequest;
00:38:53 ^
00:38:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:38:53import omero.model.ImportJob;
00:38:53 ^
00:38:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:38:53import omero.model.ImportJobI;
00:38:53 ^
00:38:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:38:53 IObject link = (IObject) linkClass.newInstance();
00:38:53 ^
00:38:53 where T is a type-variable:
00:38:53 T extends Object declared in class Class
00:38:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:38:54 T copy = (T) obj.getClass().newInstance();
00:38:54 ^
00:38:54 where T is a type-variable:
00:38:54 T extends Object declared in class Class
00:38:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:38:54 RawAccessRequest raw = new RawAccessRequest();
00:38:54 ^
00:38:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:38:54 RawAccessRequest raw = new RawAccessRequest();
00:38:54 ^
00:38:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:38:54 raw.repoUuid = legacy.root().getHash().getValue();
00:38:54 ^
00:38:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:38:54 raw.command = "rm";
00:38:54 ^
00:38:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:38:54 raw.args = Arrays.asList(path);
00:38:54 ^
00:38:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:38:54 final IObject link = linkClass.newInstance();
00:38:54 ^
00:38:54 where T is a type-variable:
00:38:54 T extends Object declared in class Class
00:38:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:38:54 originalLink.setChild(annotationClass.newInstance());
00:38:54 ^
00:38:54 where T is a type-variable:
00:38:54 T extends Object declared in class Class
00:38:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:38:54 RoiResult r = svc.findByImage(id, new RoiOptions());
00:38:54 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:38:55 final RawAccessRequest request = new RawAccessRequest();
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:38:55 final RawAccessRequest request = new RawAccessRequest();
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:38:55 request.repoUuid = repo.root().getHash().getValue();
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:38:55 request.command = "exists";
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:38:55 request.args = Collections.singletonList(dirPath);
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:38:55 final RawAccessRequest request = new RawAccessRequest();
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:38:55 final RawAccessRequest request = new RawAccessRequest();
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:38:55 request.repoUuid = repo.root().getHash().getValue();
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:38:55 request.command = "exists";
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:38:55 request.args = Collections.singletonList(dirName);
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:38:55 final ImportJob importJob = new ImportJobI();
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:38:55 final ImportJob importJob = new ImportJobI();
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:38:55 importJob.setImageName(omero.rtypes.rstring(name));
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:38:55 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:38:55 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:38:55 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:38:55 final String savedName = sent.getImageName().getValue().toString();
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:38:55 final String savedDesc = sent.getImageDescription().getValue().toString();
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:38:55 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:38:55 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:38:55 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:38:55 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:38:55 RoiResult r = svc.findByImage(image.getId().getValue(),
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:38:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:38:55 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:38:55 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:38:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:38:55 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:38:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:38:55 table = svc.getTable(f.getId().getValue());
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:38:55 RoiResult r = svc.findByImage(image.getId().getValue(),
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:38:55 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:38:55 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:38:55 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:38:55 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:38:55 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:38:55 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:38:55 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:38:55 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:38:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:38:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:38:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:38:55 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:38:55 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:38:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:38:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:38:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:38:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:38:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:38:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:38:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:38:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:38:55 svc.getShapeStatsRestricted(
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:38:55 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:38:55 ^
00:38:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:38:55 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:38:55 ^
00:38:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:38:56 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:38:56 ^
00:38:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:38:56 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:38:56 ^
00:38:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:38:56 request.typesToIgnore = Collections.singletonList("Annotation");
00:38:56 ^
00:38:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:38:56 request.typesToIgnore = Collections.singletonList("Annotation");
00:38:56 ^
00:38:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:38:56 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:38:56 ^
00:38:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:38:56 p2.setRelatedTo(p1);
00:38:56 ^
00:38:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:38:56 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:38:56 ^
00:38:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:38:56 pixels1.setRelatedTo(pixels2);
00:38:56 ^
00:38:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:38:56 Pixels pixels = pixels1.getRelatedTo();
00:38:56 ^
00:38:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:38:56 Assert.assertNull(pixels1.getRelatedTo());
00:38:56 ^
00:38:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:38:56 pixels1.setRelatedTo(pixels2);
00:38:56 ^
00:38:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:38:56 Pixels pixels = pixels1.getRelatedTo();
00:38:56 ^
00:38:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:38:56 Assert.assertNull(pixels1.getRelatedTo());
00:38:56 ^
00:38:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:38:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:38:56 ^
00:38:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:38:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:38:56 ^
00:38:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:38:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:38:56 ^
00:38:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:38:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:38:56 ^
00:38:56Note: Some input files use unchecked or unsafe operations.
00:38:56Note: Recompile with -Xlint:unchecked for details.
00:38:5688 warnings
00:38:56Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_113547864.tmp
00:38:56Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:38:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:56:: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-267fc4a0e8-ice36-b410 :: integration :: Tue May 13 00:38:48 UTC 2025
00:38:56 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:38:56:: publishing :: omero#OmeroJava-test
00:38:56 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-267fc4a0e8-ice36-b410.jar
00:38:56 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-267fc4a0e8-ice36-b410.xml
00:38:5600:38:56build-eclipse:
00:38:56No sub-builds to iterate on
00:38:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:38:5600:38:56retrieve:
00:38:56:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:38:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:38:5900:38:59prepare:
00:38:59Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:39:0000:39:00release-clients:
00:39:00Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-267fc4a0e8-ice36-b410.zip
00:39:0600:39:06release-zip:
00:39:06Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-267fc4a0e8-ice36-b410.zip
00:39:2000:39:20BUILD SUCCESSFUL
00:39:20Total time: 1 minute 3 seconds
00:39:20++ '[' -d .git ']'
00:39:20++ python3 ./build.py release-src
00:39:20Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:39:2100:39:21release-src-git:
00:39:21Releasing openmicroscopy-5.6.3-552-267fc4a0e8-ice36-b410
00:39:22 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-267fc4a0e8-ice36-b410.zip
00:39:22 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-267fc4a0e8-ice36-b410-base.zip
00:39:2400:39:24BUILD SUCCESSFUL
00:39:24Total time: 3 seconds
00:39:24++ echo BUILD_NUMBER=410
00:39:24++ echo OMERO_BRANCH=merge_ci
00:39:24++ git_info
00:39:24+++ git rev-parse HEAD
00:39:24++ HEAD=267fc4a0e805d71a971171757951fbda1e8e06a9
00:39:24++ git log --max-count=1 267fc4a0e805d71a971171757951fbda1e8e06a9
00:39:24++ env
00:39:24++ sort
00:39:24Archiving artifacts
00:39:53Finished: SUCCESS
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