05:27:44Started by upstream project "Trigger" build number 47805:27:44originally caused by:
05:27:44 Started by user devspace05:27:44 Restarted from build #477, stage OMERO Jars
05:27:44Running as SYSTEM
05:27:44Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
05:27:44The recommended git tool is: NONE
05:27:44No credentials specified
05:27:44 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
05:27:44Fetching changes from the remote Git repository
05:27:44 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
05:27:44Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git05:27:44 > git --version # timeout=10
05:27:44 > git --version # 'git version 2.43.5'
05:27:44 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
05:27:44 > git rev-parse origin/merge_ci^{commit} # timeout=10
05:27:44Checking out Revision f3e1cdda05bccdcbd368631b72ab417f1248b84c (origin/merge_ci)
05:27:44 > git config core.sparsecheckout # timeout=10
05:27:44 > git checkout -f f3e1cdda05bccdcbd368631b72ab417f1248b84c # timeout=10
05:27:44Commit message: "Add version.properties to etc/omero.properties"
05:27:44 > git rev-list --no-walk 3c3352813e6e0fc80d9315e59845484cbc59cb62 # timeout=10
05:27:44Cleaning workspace
05:27:44 > git rev-parse --verify HEAD # timeout=10
05:27:44Resetting working tree
05:27:44 > git reset --hard # timeout=10
05:27:44 > git clean -fdx # timeout=10
05:27:45Copied 6 artifacts from "OMERO-python-superbuild-build" build number 40405:27:45[OMERO-build] $ /bin/bash -xe /tmp/jenkins12724277574494400243.sh
05:27:45+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
05:27:45+ cd src
05:27:45+ export OMERO_BRANCH=merge_ci
05:27:45+ OMERO_BRANCH=merge_ci
05:27:45+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
05:27:45+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
05:27:45+ source /home/omero/settings.env
05:27:45++ OMERO_DB_HOST=pg
05:27:45++ OMERO_DB_USER=postgres
05:27:45++ OMERO_DB_PASS=
05:27:45++ OMERO_ROOT_PASS=omero
05:27:45++ OMERO_DATA_DIR=/OMERO
05:27:45++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
05:27:45+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
05:27:48+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl05:27:49Collecting zeroc-ice==3.6.5
05:27:49 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
05:27:52 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.6 MB/s eta 0:00:00
05:27:52Installing collected packages: zeroc-ice
05:27:53Successfully installed zeroc-ice-3.6.5
05:27:5305:27:53[notice] A new release of pip available: 22.3.1 -> 25.1.1
05:27:53[notice] To update, run: python3.11 -m pip install --upgrade pip
05:27:53+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
05:27:53Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
05:27:53Collecting setuptools<66
05:27:53 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
05:27:53Collecting omero-py
05:27:53 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
05:27:53Collecting urllib3<2
05:27:53 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
05:27:54Collecting appdirs
05:27:54 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
05:27:54Collecting future
05:27:54 Using cached future-1.0.0-py3-none-any.whl (491 kB)
05:27:54Collecting numpy<3
05:27:54 Using cached numpy-2.2.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB)
05:27:55Collecting Pillow>=10.0.0
05:27:55 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
05:27:55Collecting PyYAML
05:27:55 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
05:27:55Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
05:27:55Collecting requests
05:27:55 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
05:27:55Collecting portalocker
05:27:55 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
05:27:55Collecting charset-normalizer<4,>=2
05:27:55 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
05:27:55Collecting idna<4,>=2.5
05:27:55 Using cached idna-3.10-py3-none-any.whl (70 kB)
05:27:55Collecting certifi>=2017.4.17
05:27:55 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB)
05:27:55Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py
05:27:55 Attempting uninstall: setuptools
05:27:55 Found existing installation: setuptools 65.5.1
05:27:55 Uninstalling setuptools-65.5.1:
05:27:56 Successfully uninstalled setuptools-65.5.1
05:28:01Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset-normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.2.5 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20
05:28:0105:28:01[notice] A new release of pip available: 22.3.1 -> 25.1.1
05:28:01[notice] To update, run: python3.11 -m pip install --upgrade pip
05:28:01+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
05:28:01++ deactivate nondestructive
05:28:01++ '[' -n '' ']'
05:28:01++ '[' -n '' ']'
05:28:01++ hash -r
05:28:01++ '[' -n '' ']'
05:28:01++ unset VIRTUAL_ENV
05:28:01++ unset VIRTUAL_ENV_PROMPT
05:28:01++ '[' '!' nondestructive = nondestructive ']'
05:28:01++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
05:28:01++ export VIRTUAL_ENV
05:28:01++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
05:28:01++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
05:28:01++ export PATH
05:28:01++ '[' -n '' ']'
05:28:01++ '[' -z '' ']'
05:28:01++ _OLD_VIRTUAL_PS1=
05:28:01++ PS1='(omero-virtualenv) '
05:28:01++ export PS1
05:28:01++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
05:28:01++ export VIRTUAL_ENV_PROMPT
05:28:01++ hash -r
05:28:01+ source docs/hudson/OMERO.sh
05:28:01++ set -e
05:28:01++ set -u
05:28:01++ set -x
05:28:01++ source docs/hudson/functions.sh
05:28:01++ echo Building merge_ci
05:28:01Building merge_ci
05:28:01++ python3 ./build.py build-dev release-all
05:28:01Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
05:28:0205:28:02check-ivy:
05:28:02Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
05:28:02Created dir: /home/omero/workspace/OMERO-build/src/target
05:28:02:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
05:28:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
05:28:0205:28:02build-scons:
05:28:02Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
05:28:02No sub-builds to iterate on
05:28:03Entering /home/omero/workspace/OMERO-build/src/components/tools...
05:28:0305:28:03buildlist:
05:28:03:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
05:28:03:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
05:28:0305:28:03clean:
05:28:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
05:28:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
05:28:0305:28:03python-clean:
05:28:03WARNING: '' not a valid package name; please use only .-separated package names in setup.py
05:28:03/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-f3e1cdda05-ice36-b412') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
05:28:03 warnings.warn(
05:28:03running clean
05:28:03Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
05:28:03Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
05:28:0405:28:04python-clean:
05:28:04WARNING: '' not a valid package name; please use only .-separated package names in setup.py
05:28:04/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-f3e1cdda05-ice36-b412') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
05:28:04 warnings.warn(
05:28:04running clean
05:28:04Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
05:28:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
05:28:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
05:28:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
05:28:0405:28:04python-clean:
05:28:04WARNING: '' not a valid package name; please use only .-separated package names in setup.py
05:28:04/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-f3e1cdda05-ice36-b412') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
05:28:04 warnings.warn(
05:28:04running clean
05:28:04Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
05:28:04Deleting directory /home/omero/workspace/OMERO-build/src/target
05:28:0405:28:04build-scons:
05:28:04Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
05:28:0405:28:04build:
05:28:04No sub-builds to iterate on
05:28:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
05:28:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
05:28:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
05:28:04Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
05:28:0405:28:04tools-init:
05:28:04no-op
05:28:0505:28:05retrieve:
05:28:05:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
05:28:05:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
05:28:05WARNING: An illegal reflective access operation has occurred
05:28:05WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
05:28:05WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
05:28:05WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
05:28:05WARNING: All illegal access operations will be denied in a future release
05:28:3705:28:37prepare:
05:28:37Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
05:28:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
05:28:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
05:28:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
05:28:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
05:28:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
05:28:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
05:28:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
05:28:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
05:28:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
05:28:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
05:28:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
05:28:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
05:28:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
05:28:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
05:28:3705:28:37pre-compile:
05:28:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
05:28:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
05:28:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
05:28:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
05:28:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
05:28:3805:28:38compile:
05:28:38no-op
05:28:3805:28:38package:
05:28:38Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
05:28:3805:28:38install:
05:28:38:: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-f3e1cdda05-ice36-b412 :: integration :: Wed May 14 05:28:04 UTC 2025
05:28:38 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
05:28:38:: publishing :: omero#omero_client
05:28:38 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-f3e1cdda05-ice36-b412/omero_client-5.6.3-552-f3e1cdda05-ice36-b412.jar
05:28:38 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-f3e1cdda05-ice36-b412/omero_client-5.6.3-552-f3e1cdda05-ice36-b412.xml
05:28:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
05:28:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
05:28:3905:28:39retrieve:
05:28:39:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
05:28:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
05:28:39Entering /home/omero/workspace/OMERO-build/src/components/tools...
05:28:3905:28:39dist:
05:28:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
05:28:39Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
05:28:39Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
05:28:39Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
05:28:39Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
05:28:39Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
05:28:39Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
05:28:39Entering /home/omero/workspace/OMERO-build/src/components/tests...
05:28:39Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
05:28:3905:28:39copy-licenses:
05:28:39Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
05:28:39Created dir: /home/omero/workspace/OMERO-build/src/dist/share
05:28:39Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
05:28:3905:28:39copy-history:
05:28:39Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
05:28:3905:28:39copy-etc:
05:28:39Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
05:28:39Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
05:28:3905:28:39copy-sql:
05:28:39Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
05:28:4605:28:46copy-server:
05:28:46 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
05:28:4605:28:46copy-client:
05:28:46Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
05:28:48 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
05:28:4805:28:48update-version:
05:28:48Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
05:28:4805:28:48create-workdirs:
05:28:48Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
05:28:48Created dir: /home/omero/workspace/OMERO-build/src/dist/var
05:28:4805:28:48copy-luts:
05:28:48Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
05:28:48Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
05:28:4805:28:48test-compile:
05:28:48:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
05:28:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
05:28:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
05:28:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
05:28:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
05:28:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
05:28:48Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
05:28:48Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
05:28:4905:28:49testng-init:
05:28:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
05:28:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
05:28:5105:28:51,524 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
05:28:5105:28:51,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@210d1b45 - No custom configurators were discovered as a service.
05:28:5105:28:51,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@210d1b45 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
05:28:5105:28:51,530 |-INFO in ch.qos.logback.classic.util.ContextInitializer@210d1b45 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
05:28:5105:28:51,530 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
05:28:5105:28:51,531 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
05:28:5105:28:51,531 |-INFO in ch.qos.logback.classic.util.ContextInitializer@210d1b45 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
05:28:5105:28:51,531 |-INFO in ch.qos.logback.classic.util.ContextInitializer@210d1b45 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
05:28:5105:28:51,533 |-INFO in ch.qos.logback.classic.util.ContextInitializer@210d1b45 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
05:28:5105:28:51,533 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
05:28:5105:28:51,533 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
05:28:5105:28:51,534 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@29862f60 - Resource [logback.xml] occurs multiple times on the classpath.
05:28:5105:28:51,534 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@29862f60 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
05:28:5105:28:51,534 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@29862f60 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
05:28:5105:28:51,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
05:28:5105:28:51,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
05:28:5105:28:51,759 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
05:28:5105:28:51,761 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7e2f1454 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
05:28:5105:28:51,761 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7e2f1454 - Please move "immediateFlush" property into the enclosing appender.
05:28:5105:28:51,824 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7e2f1454 - Setting the "immediateFlush" property of the enclosing appender to true
05:28:5105:28:51,825 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
05:28:5105:28:51,825 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
05:28:5105:28:51,825 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
05:28:5105:28:51,825 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
05:28:5105:28:51,825 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
05:28:5105:28:51,825 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
05:28:5105:28:51,826 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@35b1e5e5 - End of configuration.
05:28:5105:28:51,828 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7caf0725 - Registering current configuration as safe fallback point
05:28:5105:28:51,828 |-INFO in ch.qos.logback.classic.util.ContextInitializer@210d1b45 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 295 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
05:28:5105:28:51lifecycle.test-compile:
05:28:51Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
05:28:51Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
05:28:52warning: [options] bootstrap class path not set in conjunction with -source 8
05:28:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:28:53import omero.grid.RawAccessRequest;
05:28:53 ^
05:28:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:28:53import omero.grid.RawAccessRequest;
05:28:53 ^
05:28:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:28:53import omero.grid.RawAccessRequest;
05:28:53 ^
05:28:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
05:28:53import omero.model.ImportJob;
05:28:53 ^
05:28:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
05:28:53import omero.model.ImportJobI;
05:28:53 ^
05:28:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
05:28:54 IObject link = (IObject) linkClass.newInstance();
05:28:54 ^
05:28:54 where T is a type-variable:
05:28:54 T extends Object declared in class Class
05:28:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
05:28:54 T copy = (T) obj.getClass().newInstance();
05:28:54 ^
05:28:54 where T is a type-variable:
05:28:54 T extends Object declared in class Class
05:28:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:28:54 RawAccessRequest raw = new RawAccessRequest();
05:28:54 ^
05:28:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:28:54 RawAccessRequest raw = new RawAccessRequest();
05:28:54 ^
05:28:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
05:28:54 raw.repoUuid = legacy.root().getHash().getValue();
05:28:54 ^
05:28:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
05:28:54 raw.command = "rm";
05:28:54 ^
05:28:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
05:28:54 raw.args = Arrays.asList(path);
05:28:54 ^
05:28:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
05:28:54 final IObject link = linkClass.newInstance();
05:28:54 ^
05:28:54 where T is a type-variable:
05:28:54 T extends Object declared in class Class
05:28:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
05:28:54 originalLink.setChild(annotationClass.newInstance());
05:28:54 ^
05:28:54 where T is a type-variable:
05:28:54 T extends Object declared in class Class
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
05:28:55 RoiResult r = svc.findByImage(id, new RoiOptions());
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:28:55 final RawAccessRequest request = new RawAccessRequest();
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:28:55 final RawAccessRequest request = new RawAccessRequest();
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
05:28:55 request.repoUuid = repo.root().getHash().getValue();
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
05:28:55 request.command = "exists";
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
05:28:55 request.args = Collections.singletonList(dirPath);
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:28:55 final RawAccessRequest request = new RawAccessRequest();
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
05:28:55 final RawAccessRequest request = new RawAccessRequest();
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
05:28:55 request.repoUuid = repo.root().getHash().getValue();
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
05:28:55 request.command = "exists";
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
05:28:55 request.args = Collections.singletonList(dirName);
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
05:28:55 final ImportJob importJob = new ImportJobI();
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
05:28:55 final ImportJob importJob = new ImportJobI();
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
05:28:55 importJob.setImageName(omero.rtypes.rstring(name));
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
05:28:55 importJob.setImageDescription(omero.rtypes.rstring(desc));
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
05:28:55 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
05:28:55 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
05:28:55 final String savedName = sent.getImageName().getValue().toString();
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
05:28:55 final String savedDesc = sent.getImageDescription().getValue().toString();
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
05:28:55 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
05:28:55 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
05:28:55 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
05:28:55 ^
05:28:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
05:28:55 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
05:28:55 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
05:28:56 RoiResult r = svc.findByImage(image.getId().getValue(),
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:28:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:28:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:28:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:28:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
05:28:56 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:28:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
05:28:56 table = svc.getTable(f.getId().getValue());
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
05:28:56 RoiResult r = svc.findByImage(image.getId().getValue(),
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
05:28:56 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
05:28:56 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
05:28:56 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
05:28:56 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
05:28:56 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
05:28:56 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
05:28:56 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
05:28:56 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
05:28:56 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
05:28:56 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
05:28:56 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
05:28:56 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
05:28:56 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
05:28:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
05:28:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
05:28:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
05:28:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
05:28:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
05:28:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
05:28:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
05:28:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
05:28:56 svc.getShapeStatsRestricted(
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
05:28:56 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
05:28:56 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
05:28:56 request.typesToIgnore = Collections.singletonList("TagAnnotation");
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
05:28:56 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
05:28:56 request.typesToIgnore = Collections.singletonList("Annotation");
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
05:28:56 request.typesToIgnore = Collections.singletonList("Annotation");
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
05:28:56 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
05:28:56 p2.setRelatedTo(p1);
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
05:28:56 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
05:28:56 pixels1.setRelatedTo(pixels2);
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
05:28:56 Pixels pixels = pixels1.getRelatedTo();
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
05:28:56 Assert.assertNull(pixels1.getRelatedTo());
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
05:28:56 pixels1.setRelatedTo(pixels2);
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
05:28:56 Pixels pixels = pixels1.getRelatedTo();
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
05:28:56 Assert.assertNull(pixels1.getRelatedTo());
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:28:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:28:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:28:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
05:28:56 ^
05:28:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
05:28:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
05:28:56 ^
05:28:56Note: Some input files use unchecked or unsafe operations.
05:28:56Note: Recompile with -Xlint:unchecked for details.
05:28:5688 warnings
05:28:56Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1614807767.tmp
05:28:56Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
05:28:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
05:28:56:: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-f3e1cdda05-ice36-b412 :: integration :: Wed May 14 05:28:48 UTC 2025
05:28:56 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
05:28:56:: publishing :: omero#OmeroJava-test
05:28:56 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-f3e1cdda05-ice36-b412.jar
05:28:56 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-f3e1cdda05-ice36-b412.xml
05:28:5605:28:56build-eclipse:
05:28:56No sub-builds to iterate on
05:28:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
05:28:5705:28:57retrieve:
05:28:57:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
05:28:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
05:28:5905:28:59prepare:
05:28:59Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
05:29:0005:29:00release-clients:
05:29:00Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-f3e1cdda05-ice36-b412.zip
05:29:0705:29:07release-zip:
05:29:07Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-f3e1cdda05-ice36-b412.zip
05:29:2005:29:20BUILD SUCCESSFUL
05:29:20Total time: 1 minute 18 seconds
05:29:20++ '[' -d .git ']'
05:29:20++ python3 ./build.py release-src
05:29:20Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
05:29:2105:29:21release-src-git:
05:29:21Releasing openmicroscopy-5.6.3-552-f3e1cdda05-ice36-b412
05:29:22 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-f3e1cdda05-ice36-b412.zip
05:29:22 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-f3e1cdda05-ice36-b412-base.zip
05:29:2405:29:24BUILD SUCCESSFUL
05:29:24Total time: 3 seconds
05:29:24++ echo BUILD_NUMBER=412
05:29:24++ echo OMERO_BRANCH=merge_ci
05:29:24++ git_info
05:29:24+++ git rev-parse HEAD
05:29:24++ HEAD=f3e1cdda05bccdcbd368631b72ab417f1248b84c
05:29:24++ git log --max-count=1 f3e1cdda05bccdcbd368631b72ab417f1248b84c
05:29:24++ sort
05:29:24++ env
05:29:24Archiving artifacts
05:29:52Finished: SUCCESS
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