01:24:47Started by upstream project "Trigger" build number 5201:24:47originally caused by:
01:24:47 Started by timer
01:24:47Running as SYSTEM
01:24:47Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:24:47The recommended git tool is: NONE
01:24:47No credentials specified
01:24:47 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:24:47Fetching changes from the remote Git repository
01:24:47 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:24:47Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:24:47 > git --version # timeout=10
01:24:47 > git --version # 'git version 2.52.0'
01:24:47 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:24:52 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:24:52Checking out Revision 6f7718bbff980b8fd7d9073fc5ca8fb3d3e60306 (origin/merge_ci)
01:24:52 > git config core.sparsecheckout # timeout=10
01:24:52 > git checkout -f 6f7718bbff980b8fd7d9073fc5ca8fb3d3e60306 # timeout=10
01:24:56Commit message: "Add version.properties to etc/omero.properties"
01:24:56 > git rev-list --no-walk fc96c135c30ab8aa5d634f54c16c05df00ef7058 # timeout=10
01:24:56Cleaning workspace
01:24:56 > git rev-parse --verify HEAD # timeout=10
01:24:56Resetting working tree
01:24:56 > git reset --hard # timeout=10
01:24:56 > git clean -fdx # timeout=10
01:25:26Copied 6 artifacts from "OMERO-python-superbuild-build" build number 3701:25:27[OMERO-build] $ /bin/bash -xe /tmp/jenkins12937378359271442387.sh
01:25:27+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
01:25:27+ cd src
01:25:27+ export OMERO_BRANCH=merge_ci
01:25:27+ OMERO_BRANCH=merge_ci
01:25:27+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:25:27+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:25:53+ source /home/omero/settings.env
01:25:53++ OMERO_DB_HOST=pg
01:25:53++ OMERO_DB_USER=postgres
01:25:53++ OMERO_DB_PASS=
01:25:53++ OMERO_ROOT_PASS=omero
01:25:53++ OMERO_DATA_DIR=/OMERO
01:25:53++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:25:53+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:26:13+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl01:26:14Collecting zeroc-ice==3.6.5
01:26:14 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:26:17 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.3 MB/s eta 0:00:00
01:26:17Installing collected packages: zeroc-ice
01:26:21Successfully installed zeroc-ice-3.6.5
01:26:2101:26:21[notice] A new release of pip available: 22.3.1 -> 26.2.1
01:26:21[notice] To update, run: python3.11 -m pip install --upgrade pip
01:26:21+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:26:22Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:26:22Collecting setuptools<66
01:26:23 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:26:23Collecting omero-py
01:26:23 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
01:26:23Collecting appdirs
01:26:23 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:26:23Collecting future
01:26:23 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:26:24Collecting numpy<3,>=2
01:26:24 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:26:24Collecting Pillow>=10.0.0
01:26:25 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:26:25Collecting PyYAML
01:26:25 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:26:25Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:26:25Collecting requests
01:26:25 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:26:25Collecting portalocker
01:26:25 Using cached portalocker-4.1.0-py3-none-any.whl (65 kB)
01:26:26Collecting charset_normalizer<4,>=2
01:26:26 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
01:26:26Collecting idna<4,>=2.5
01:26:26 Using cached idna-3.18-py3-none-any.whl (65 kB)
01:26:26Collecting urllib3<3,>=1.26
01:26:26 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:26:26Collecting certifi>=2023.5.7
01:26:26 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
01:26:26Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
01:26:27 Attempting uninstall: setuptools
01:26:27 Found existing installation: setuptools 65.5.1
01:26:28 Uninstalling setuptools-65.5.1:
01:26:29 Successfully uninstalled setuptools-65.5.1
01:27:21Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
01:27:2101:27:21[notice] A new release of pip available: 22.3.1 -> 26.2.1
01:27:21[notice] To update, run: python3.11 -m pip install --upgrade pip
01:27:21+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:27:21++ deactivate nondestructive
01:27:21++ '[' -n '' ']'
01:27:21++ '[' -n '' ']'
01:27:21++ hash -r
01:27:21++ '[' -n '' ']'
01:27:21++ unset VIRTUAL_ENV
01:27:21++ unset VIRTUAL_ENV_PROMPT
01:27:21++ '[' '!' nondestructive = nondestructive ']'
01:27:21++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:27:21++ export VIRTUAL_ENV
01:27:21++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:27:21++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:27:21++ export PATH
01:27:21++ '[' -n '' ']'
01:27:21++ '[' -z '' ']'
01:27:21++ _OLD_VIRTUAL_PS1=
01:27:21++ PS1='(omero-virtualenv) '
01:27:21++ export PS1
01:27:21++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:27:21++ export VIRTUAL_ENV_PROMPT
01:27:21++ hash -r
01:27:21+ source docs/hudson/OMERO.sh
01:27:21++ set -e
01:27:21++ set -u
01:27:21++ set -x
01:27:21++ source docs/hudson/functions.sh
01:27:21++ echo Building merge_ci
01:27:21Building merge_ci
01:27:21++ python3 ./build.py build-dev release-all
01:27:21Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:27:2301:27:23check-ivy:
01:27:23Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:27:23Created dir: /home/omero/workspace/OMERO-build/src/target
01:27:23:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:27:23:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:27:2401:27:24build-scons:
01:27:24Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:27:26No sub-builds to iterate on
01:27:27Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:27:2701:27:27buildlist:
01:27:27:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:27:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:27:2701:27:27clean:
01:27:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:27:28Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:27:2901:27:29python-clean:
01:27:29WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:27:29/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-6f7718bbff-ice36-b44') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:27:29 warnings.warn(
01:27:29running clean
01:27:29Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:27:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:27:3001:27:30python-clean:
01:27:30WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:27:30/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-6f7718bbff-ice36-b44') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:27:30 warnings.warn(
01:27:30running clean
01:27:30Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:27:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:27:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:27:31Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:27:3101:27:31python-clean:
01:27:31WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:27:31/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-6f7718bbff-ice36-b44') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:27:31 warnings.warn(
01:27:31running clean
01:27:31Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:27:31Deleting directory /home/omero/workspace/OMERO-build/src/target
01:27:3301:27:33build-scons:
01:27:33Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:27:3401:27:34build:
01:27:34No sub-builds to iterate on
01:27:34Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:27:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:27:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:27:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:27:3601:27:36tools-init:
01:27:36no-op
01:27:3601:27:36retrieve:
01:27:36:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:27:36:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:28:2001:28:20prepare:
01:28:20Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:28:20Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:28:20Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:28:20Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:28:20Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:28:20Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:28:20Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:28:20Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:28:20Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:28:20Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:28:20Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:28:20Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:28:20Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:28:20Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:28:20Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:28:2001:28:20pre-compile:
01:28:20Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:28:22Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:28:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:28:35Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:28:35Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:28:3801:28:38compile:
01:28:38no-op
01:28:3801:28:38package:
01:28:38Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:28:4201:28:42install:
01:28:42:: delivering :: omero#omero_client;working@9dd684e5747f :: 5.6.3-643-6f7718bbff-ice36-b44 :: integration :: Tue Aug 11 01:27:35 UTC 2026
01:28:42 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:28:42:: publishing :: omero#omero_client
01:28:42 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-643-6f7718bbff-ice36-b44/omero_client-5.6.3-643-6f7718bbff-ice36-b44.jar
01:28:42 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-643-6f7718bbff-ice36-b44/omero_client-5.6.3-643-6f7718bbff-ice36-b44.xml
01:28:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:28:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:28:4301:28:43retrieve:
01:28:43:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:28:43:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:28:44Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:28:4401:28:44dist:
01:28:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:28:44Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:28:44Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:28:44Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:28:45Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:28:45Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:28:46Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:28:46Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:28:47Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:28:4801:28:48copy-licenses:
01:28:48Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:28:48Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:28:48Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:28:4801:28:48copy-history:
01:28:48Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:28:4801:28:48copy-etc:
01:28:48Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:28:48Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:28:4901:28:49copy-sql:
01:28:49Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:29:0201:29:02copy-server:
01:29:02 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
01:29:0701:29:07copy-client:
01:29:07Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:29:11 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
01:29:1701:29:17update-version:
01:29:17Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:29:1701:29:17create-workdirs:
01:29:17Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:29:17Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:29:17Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
01:29:1701:29:17copy-luts:
01:29:17Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:29:17Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:29:1701:29:17test-compile:
01:29:17:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:29:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:29:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:29:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:29:18Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:29:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:29:19Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:29:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:29:2001:29:20testng-init:
01:29:20:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:29:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:29:2901:29:29,212 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
01:29:2901:29:29,215 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service.
01:29:2901:29:29,215 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:29:2901:29:29,219 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:29:2901:29:29,222 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:29:2901:29:29,225 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:29:2901:29:29,226 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 7 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:29:2901:29:29,226 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:29:2901:29:29,228 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:29:2901:29:29,230 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:29:2901:29:29,231 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:29:2901:29:29,233 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath.
01:29:2901:29:29,233 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:29:2901:29:29,233 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:29:2901:29:29,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:29:2901:29:29,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:29:2901:29:29,489 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:29:2901:29:29,491 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:29:2901:29:29,491 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender.
01:29:2901:29:29,563 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true
01:29:2901:29:29,564 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:29:2901:29:29,564 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:29:2901:29:29,564 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:29:2901:29:29,564 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:29:2901:29:29,564 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:29:2901:29:29,564 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:29:2901:29:29,566 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration.
01:29:2901:29:29,568 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point
01:29:2901:29:29,568 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 340 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:29:2901:29:29lifecycle.test-compile:
01:29:29Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:29:29Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:29:30warning: [options] bootstrap class path not set in conjunction with -source 8
01:29:30warning: [options] source value 8 is obsolete and will be removed in a future release
01:29:30warning: [options] target value 8 is obsolete and will be removed in a future release
01:29:30warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
01:29:31/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:31import omero.grid.RawAccessRequest;
01:29:31 ^
01:29:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:32import omero.grid.RawAccessRequest;
01:29:32 ^
01:29:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:32import omero.grid.RawAccessRequest;
01:29:32 ^
01:29:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:29:32import omero.model.ImportJob;
01:29:32 ^
01:29:32/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:29:32import omero.model.ImportJobI;
01:29:32 ^
01:29:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:29:33 IObject link = (IObject) linkClass.newInstance();
01:29:33 ^
01:29:33 where T is a type-variable:
01:29:33 T extends Object declared in class Class
01:29:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:29:33 T copy = (T) obj.getClass().newInstance();
01:29:33 ^
01:29:33 where T is a type-variable:
01:29:33 T extends Object declared in class Class
01:29:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:33 RawAccessRequest raw = new RawAccessRequest();
01:29:33 ^
01:29:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:33 RawAccessRequest raw = new RawAccessRequest();
01:29:33 ^
01:29:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:29:33 raw.repoUuid = legacy.root().getHash().getValue();
01:29:33 ^
01:29:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:29:33 raw.command = "rm";
01:29:33 ^
01:29:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:29:33 raw.args = Arrays.asList(path);
01:29:33 ^
01:29:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:29:33 final IObject link = linkClass.newInstance();
01:29:33 ^
01:29:33 where T is a type-variable:
01:29:33 T extends Object declared in class Class
01:29:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:29:33 originalLink.setChild(annotationClass.newInstance());
01:29:33 ^
01:29:33 where T is a type-variable:
01:29:33 T extends Object declared in class Class
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:29:34 RoiResult r = svc.findByImage(id, new RoiOptions());
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:34 final RawAccessRequest request = new RawAccessRequest();
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:34 final RawAccessRequest request = new RawAccessRequest();
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:29:34 request.repoUuid = repo.root().getHash().getValue();
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:29:34 request.command = "exists";
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:29:34 request.args = Collections.singletonList(dirPath);
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:34 final RawAccessRequest request = new RawAccessRequest();
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:29:34 final RawAccessRequest request = new RawAccessRequest();
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:29:34 request.repoUuid = repo.root().getHash().getValue();
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:29:34 request.command = "exists";
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:29:34 request.args = Collections.singletonList(dirName);
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:29:34 final ImportJob importJob = new ImportJobI();
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:29:34 final ImportJob importJob = new ImportJobI();
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:29:34 importJob.setImageName(omero.rtypes.rstring(name));
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:29:34 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:29:34 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:29:34 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:29:34 final String savedName = sent.getImageName().getValue().toString();
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:29:34 final String savedDesc = sent.getImageDescription().getValue().toString();
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:29:34 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:29:34 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:29:34 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:29:34 ^
01:29:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:29:34 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:29:34 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:29:35 RoiResult r = svc.findByImage(image.getId().getValue(),
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:35 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:35 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:35 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:35 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:29:35 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:35 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:29:35 table = svc.getTable(f.getId().getValue());
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:29:35 RoiResult r = svc.findByImage(image.getId().getValue(),
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:29:35 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:29:35 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:29:35 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:29:35 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:35 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:35 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:35 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:35 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
01:29:35 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:35 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:35 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:35 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:35 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:35 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:35 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:35 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:35 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:35 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:35 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:35 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:29:35 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:29:35 svc.getShapeStatsRestricted(
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:29:35 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:29:35 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:29:35 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:29:35 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:29:35 request.typesToIgnore = Collections.singletonList("Annotation");
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:29:35 request.typesToIgnore = Collections.singletonList("Annotation");
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:29:35 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:29:35 p2.setRelatedTo(p1);
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:29:35 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:29:35 pixels1.setRelatedTo(pixels2);
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:29:35 Pixels pixels = pixels1.getRelatedTo();
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:29:35 Assert.assertNull(pixels1.getRelatedTo());
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:29:35 pixels1.setRelatedTo(pixels2);
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:29:35 Pixels pixels = pixels1.getRelatedTo();
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:29:35 Assert.assertNull(pixels1.getRelatedTo());
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:35 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:35 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:35 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:29:35 ^
01:29:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:29:35 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:29:35 ^
01:29:36Note: Some input files use unchecked or unsafe operations.
01:29:36Note: Recompile with -Xlint:unchecked for details.
01:29:3691 warnings
01:29:36Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_347323766.tmp
01:29:36Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:29:36:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:29:36:: delivering :: omero#OmeroJava-test;working@9dd684e5747f :: 5.6.3-643-6f7718bbff-ice36-b44 :: integration :: Tue Aug 11 01:29:19 UTC 2026
01:29:36 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:29:36:: publishing :: omero#OmeroJava-test
01:29:36 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-643-6f7718bbff-ice36-b44.jar
01:29:36 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-643-6f7718bbff-ice36-b44.xml
01:29:3601:29:36build-eclipse:
01:29:36No sub-builds to iterate on
01:29:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:29:3701:29:37retrieve:
01:29:37:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:29:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:29:4201:29:42prepare:
01:29:42Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:29:4601:29:46release-clients:
01:29:46Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-643-6f7718bbff-ice36-b44.zip
01:29:5201:29:52release-zip:
01:29:52Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-643-6f7718bbff-ice36-b44.zip
01:30:0401:30:04BUILD SUCCESSFUL
01:30:04Total time: 2 minutes 43 seconds
01:30:04++ '[' -d .git ']'
01:30:04++ python3 ./build.py release-src
01:30:05Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:30:0601:30:06release-src-git:
01:30:06Releasing openmicroscopy-5.6.3-643-6f7718bbff-ice36-b44
01:30:07 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-643-6f7718bbff-ice36-b44.zip
01:30:07 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-643-6f7718bbff-ice36-b44-base.zip
01:30:0901:30:09BUILD SUCCESSFUL
01:30:09Total time: 4 seconds
01:30:09++ echo BUILD_NUMBER=44
01:30:09++ echo OMERO_BRANCH=merge_ci
01:30:09++ git_info
01:30:09+++ git rev-parse HEAD
01:30:09++ HEAD=6f7718bbff980b8fd7d9073fc5ca8fb3d3e60306
01:30:09++ git log --max-count=1 6f7718bbff980b8fd7d9073fc5ca8fb3d3e60306
01:30:09++ env
01:30:09++ sort
01:30:09Archiving artifacts
01:30:41Finished: SUCCESS
