00:33:02Started by upstream project "Trigger" build number 56700:33:02originally caused by:
00:33:02 Started by timer
00:33:02Running as SYSTEM
00:33:02Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:33:02The recommended git tool is: NONE
00:33:02No credentials specified
00:33:02 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:33:02Fetching changes from the remote Git repository
00:33:02 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:33:02Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:33:02 > git --version # timeout=10
00:33:02 > git --version # 'git version 2.43.5'
00:33:02 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:33:03 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:33:03Checking out Revision 105e17f5b4a3aaf034fad5bb33d6ccf266694b57 (origin/merge_ci)
00:33:03 > git config core.sparsecheckout # timeout=10
00:33:03 > git checkout -f 105e17f5b4a3aaf034fad5bb33d6ccf266694b57 # timeout=10
00:33:03Commit message: "Add version.properties to etc/omero.properties"
00:33:03 > git rev-list --no-walk 72e6b0b5267aed956495559e8f38a816dd940eb0 # timeout=10
00:33:03Cleaning workspace
00:33:03 > git rev-parse --verify HEAD # timeout=10
00:33:03Resetting working tree
00:33:03 > git reset --hard # timeout=10
00:33:03 > git clean -fdx # timeout=10
00:33:03Copied 6 artifacts from "OMERO-python-superbuild-build" build number 47300:33:03[OMERO-build] $ /bin/bash -xe /tmp/jenkins9002275447272435490.sh
00:33:03+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
00:33:03+ cd src
00:33:03+ export OMERO_BRANCH=merge_ci
00:33:03+ OMERO_BRANCH=merge_ci
00:33:03+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:33:03+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:33:04+ source /home/omero/settings.env
00:33:04++ OMERO_DB_HOST=pg
00:33:04++ OMERO_DB_USER=postgres
00:33:04++ OMERO_DB_PASS=
00:33:04++ OMERO_ROOT_PASS=omero
00:33:04++ OMERO_DATA_DIR=/OMERO
00:33:04++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:33:04+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:33:07+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:33:08Collecting zeroc-ice==3.6.5
00:33:08 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:33:13 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 2.5 MB/s eta 0:00:00
00:33:13Installing collected packages: zeroc-ice
00:33:14Successfully installed zeroc-ice-3.6.5
00:33:1400:33:14[notice] A new release of pip available: 22.3.1 -> 25.1.1
00:33:14[notice] To update, run: python3.11 -m pip install --upgrade pip
00:33:14+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:33:15Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:33:15Collecting setuptools<66
00:33:15 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:33:15Collecting omero-py
00:33:15 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB)
00:33:16Collecting urllib3<2
00:33:16 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:33:16Collecting appdirs
00:33:16 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:33:16Collecting future
00:33:16 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:33:16Collecting numpy<3
00:33:16 Using cached numpy-2.3.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:33:17Collecting Pillow>=10.0.0
00:33:17 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
00:33:17Collecting PyYAML
00:33:17 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:33:17Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:33:17Collecting requests
00:33:17 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
00:33:17Collecting portalocker
00:33:17 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:33:17Collecting charset_normalizer<4,>=2
00:33:17 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
00:33:17Collecting idna<4,>=2.5
00:33:17 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:33:17Collecting certifi>=2017.4.17
00:33:17 Using cached certifi-2025.7.14-py3-none-any.whl (162 kB)
00:33:17Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:33:17 Attempting uninstall: setuptools
00:33:17 Found existing installation: setuptools 65.5.1
00:33:18 Uninstalling setuptools-65.5.1:
00:33:18 Successfully uninstalled setuptools-65.5.1
00:33:23Successfully installed Pillow-11.3.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.7.14 charset_normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.3.2 omero-py-5.21.0 portalocker-3.2.0 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20
00:33:2300:33:23[notice] A new release of pip available: 22.3.1 -> 25.1.1
00:33:23[notice] To update, run: python3.11 -m pip install --upgrade pip
00:33:23+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:33:23++ deactivate nondestructive
00:33:23++ '[' -n '' ']'
00:33:23++ '[' -n '' ']'
00:33:23++ hash -r
00:33:23++ '[' -n '' ']'
00:33:23++ unset VIRTUAL_ENV
00:33:23++ unset VIRTUAL_ENV_PROMPT
00:33:23++ '[' '!' nondestructive = nondestructive ']'
00:33:23++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:33:23++ export VIRTUAL_ENV
00:33:23++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:33:23++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:33:23++ export PATH
00:33:23++ '[' -n '' ']'
00:33:23++ '[' -z '' ']'
00:33:23++ _OLD_VIRTUAL_PS1=
00:33:23++ PS1='(omero-virtualenv) '
00:33:23++ export PS1
00:33:23++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:33:23++ export VIRTUAL_ENV_PROMPT
00:33:23++ hash -r
00:33:23+ source docs/hudson/OMERO.sh
00:33:23++ set -e
00:33:23++ set -u
00:33:23++ set -x
00:33:23++ source docs/hudson/functions.sh
00:33:23++ echo Building merge_ci
00:33:23Building merge_ci
00:33:23++ python3 ./build.py build-dev release-all
00:33:23Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:33:2400:33:24check-ivy:
00:33:24Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:33:24Created dir: /home/omero/workspace/OMERO-build/src/target
00:33:24:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:33:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:33:2400:33:24build-scons:
00:33:24Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:33:25No sub-builds to iterate on
00:33:25Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:33:2500:33:25buildlist:
00:33:25:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:33:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:33:2500:33:25clean:
00:33:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:33:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:33:2500:33:25python-clean:
00:33:25WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:33:25/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-105e17f5b4-ice36-b480') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:33:25 warnings.warn(
00:33:25running clean
00:33:25Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:33:25Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:33:2600:33:26python-clean:
00:33:26WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:33:26/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-105e17f5b4-ice36-b480') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:33:26 warnings.warn(
00:33:26running clean
00:33:26Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:33:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:33:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:33:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:33:2600:33:26python-clean:
00:33:26WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:33:26/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-105e17f5b4-ice36-b480') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:33:26 warnings.warn(
00:33:26running clean
00:33:26Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:33:26Deleting directory /home/omero/workspace/OMERO-build/src/target
00:33:2600:33:26build-scons:
00:33:26Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:33:2600:33:26build:
00:33:26No sub-builds to iterate on
00:33:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:33:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:33:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:33:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:33:2700:33:27tools-init:
00:33:27no-op
00:33:2700:33:27retrieve:
00:33:27:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:33:27:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:33:27WARNING: An illegal reflective access operation has occurred
00:33:27WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:33:27WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:33:27WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:33:27WARNING: All illegal access operations will be denied in a future release
00:33:4100:33:41prepare:
00:33:41Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:33:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:33:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:33:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:33:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:33:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:33:41Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:33:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:33:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:33:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:33:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:33:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:33:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:33:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:33:41Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:33:4100:33:41pre-compile:
00:33:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:33:41Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:33:42Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:33:42Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:33:42Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:33:4200:33:42compile:
00:33:42no-op
00:33:4200:33:42package:
00:33:42Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:33:4300:33:43install:
00:33:43:: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-574-105e17f5b4-ice36-b480 :: integration :: Sun Jul 27 00:33:26 UTC 2025
00:33:43 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:33:43:: publishing :: omero#omero_client
00:33:43 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-105e17f5b4-ice36-b480/omero_client-5.6.3-574-105e17f5b4-ice36-b480.jar
00:33:43 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-105e17f5b4-ice36-b480/omero_client-5.6.3-574-105e17f5b4-ice36-b480.xml
00:33:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:33:43Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:33:4300:33:43retrieve:
00:33:43:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:33:43:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:33:43Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:33:4300:33:43dist:
00:33:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:33:43Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:33:43Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:33:43Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:33:43Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:33:43Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:33:43Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:33:43Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:33:43Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:33:4400:33:44copy-licenses:
00:33:44Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:33:44Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:33:44Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:33:4400:33:44copy-history:
00:33:44Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:33:4400:33:44copy-etc:
00:33:44Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:33:44Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:33:4400:33:44copy-sql:
00:33:44Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:33:4700:33:47copy-server:
00:33:47 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:33:4700:33:47copy-client:
00:33:47Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:33:49 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:33:4900:33:49update-version:
00:33:49Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:33:4900:33:49create-workdirs:
00:33:49Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:33:49Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:33:4900:33:49copy-luts:
00:33:49Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:33:49Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:33:4900:33:49test-compile:
00:33:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:33:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:33:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:33:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:33:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:33:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:33:49Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:33:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:33:4900:33:49testng-init:
00:33:49:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:33:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:33:5200:33:52,325 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
00:33:5200:33:52,327 |-INFO in ch.qos.logback.classic.util.ContextInitializer@773e4573 - No custom configurators were discovered as a service.
00:33:5200:33:52,327 |-INFO in ch.qos.logback.classic.util.ContextInitializer@773e4573 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:33:5200:33:52,331 |-INFO in ch.qos.logback.classic.util.ContextInitializer@773e4573 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:33:5200:33:52,331 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:33:5200:33:52,331 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:33:5200:33:52,332 |-INFO in ch.qos.logback.classic.util.ContextInitializer@773e4573 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:33:5200:33:52,332 |-INFO in ch.qos.logback.classic.util.ContextInitializer@773e4573 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:33:5200:33:52,334 |-INFO in ch.qos.logback.classic.util.ContextInitializer@773e4573 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:33:5200:33:52,334 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:33:5200:33:52,334 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:33:5200:33:52,335 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6f3059ad - Resource [logback.xml] occurs multiple times on the classpath.
00:33:5200:33:52,335 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6f3059ad - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:33:5200:33:52,335 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@6f3059ad - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:33:5200:33:52,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:33:5200:33:52,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:33:5200:33:52,550 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:33:5200:33:52,551 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7c5024c1 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:33:5200:33:52,551 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7c5024c1 - Please move "immediateFlush" property into the enclosing appender.
00:33:5200:33:52,611 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7c5024c1 - Setting the "immediateFlush" property of the enclosing appender to true
00:33:5200:33:52,611 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:33:5200:33:52,611 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:33:5200:33:52,611 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:33:5200:33:52,611 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:33:5200:33:52,612 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:33:5200:33:52,612 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:33:5200:33:52,613 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@595be089 - End of configuration.
00:33:5200:33:52,615 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5c4b230c - Registering current configuration as safe fallback point
00:33:5200:33:52,615 |-INFO in ch.qos.logback.classic.util.ContextInitializer@773e4573 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 281 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:33:5200:33:52lifecycle.test-compile:
00:33:52Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:33:52Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:33:52warning: [options] bootstrap class path not set in conjunction with -source 8
00:33:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:33:54import omero.grid.RawAccessRequest;
00:33:54 ^
00:33:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:33:54import omero.grid.RawAccessRequest;
00:33:54 ^
00:33:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:33:54import omero.grid.RawAccessRequest;
00:33:54 ^
00:33:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:33:54import omero.model.ImportJob;
00:33:54 ^
00:33:54/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:33:54import omero.model.ImportJobI;
00:33:54 ^
00:33:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:33:55 IObject link = (IObject) linkClass.newInstance();
00:33:55 ^
00:33:55 where T is a type-variable:
00:33:55 T extends Object declared in class Class
00:33:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:33:55 T copy = (T) obj.getClass().newInstance();
00:33:55 ^
00:33:55 where T is a type-variable:
00:33:55 T extends Object declared in class Class
00:33:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:33:55 RawAccessRequest raw = new RawAccessRequest();
00:33:55 ^
00:33:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:33:55 RawAccessRequest raw = new RawAccessRequest();
00:33:55 ^
00:33:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:33:55 raw.repoUuid = legacy.root().getHash().getValue();
00:33:55 ^
00:33:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:33:55 raw.command = "rm";
00:33:55 ^
00:33:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:33:55 raw.args = Arrays.asList(path);
00:33:55 ^
00:33:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:33:55 final IObject link = linkClass.newInstance();
00:33:55 ^
00:33:55 where T is a type-variable:
00:33:55 T extends Object declared in class Class
00:33:55/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:33:55 originalLink.setChild(annotationClass.newInstance());
00:33:55 ^
00:33:55 where T is a type-variable:
00:33:55 T extends Object declared in class Class
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:33:56 RoiResult r = svc.findByImage(id, new RoiOptions());
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:33:56 final RawAccessRequest request = new RawAccessRequest();
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:33:56 final RawAccessRequest request = new RawAccessRequest();
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:33:56 request.repoUuid = repo.root().getHash().getValue();
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:33:56 request.command = "exists";
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:33:56 request.args = Collections.singletonList(dirPath);
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:33:56 final RawAccessRequest request = new RawAccessRequest();
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:33:56 final RawAccessRequest request = new RawAccessRequest();
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:33:56 request.repoUuid = repo.root().getHash().getValue();
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:33:56 request.command = "exists";
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:33:56 request.args = Collections.singletonList(dirName);
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:33:56 final ImportJob importJob = new ImportJobI();
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:33:56 final ImportJob importJob = new ImportJobI();
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:33:56 importJob.setImageName(omero.rtypes.rstring(name));
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:33:56 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:33:56 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:33:56 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:33:56 final String savedName = sent.getImageName().getValue().toString();
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:33:56 final String savedDesc = sent.getImageDescription().getValue().toString();
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:33:56 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:33:56 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:33:56 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:33:56 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:33:56 RoiResult r = svc.findByImage(image.getId().getValue(),
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:33:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:33:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:33:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:33:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:33:56 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:33:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:33:56 table = svc.getTable(f.getId().getValue());
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:33:56 RoiResult r = svc.findByImage(image.getId().getValue(),
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:33:56 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:33:56 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:33:56 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:33:56 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:33:56 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:33:56 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:33:56 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:33:56 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:33:56 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:33:56 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:33:56 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:33:56 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:33:56 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:33:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:33:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:33:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:33:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:33:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:33:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:33:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:33:56 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:33:56 svc.getShapeStatsRestricted(
00:33:56 ^
00:33:56/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:33:56 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:33:56 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:33:57 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:33:57 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:33:57 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:33:57 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:33:57 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:33:57 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:33:57 request.typesToIgnore = Collections.singletonList("Annotation");
00:33:57 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:33:57 request.typesToIgnore = Collections.singletonList("Annotation");
00:33:57 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:33:57 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:33:57 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:33:57 p2.setRelatedTo(p1);
00:33:57 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:33:57 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:33:57 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:33:57 pixels1.setRelatedTo(pixels2);
00:33:57 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:33:57 Pixels pixels = pixels1.getRelatedTo();
00:33:57 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:33:57 Assert.assertNull(pixels1.getRelatedTo());
00:33:57 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:33:57 pixels1.setRelatedTo(pixels2);
00:33:57 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:33:57 Pixels pixels = pixels1.getRelatedTo();
00:33:57 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:33:57 Assert.assertNull(pixels1.getRelatedTo());
00:33:57 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:33:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:33:57 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:33:57 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:33:57 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:33:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:33:57 ^
00:33:57/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:33:57 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:33:57 ^
00:33:57Note: Some input files use unchecked or unsafe operations.
00:33:57Note: Recompile with -Xlint:unchecked for details.
00:33:5788 warnings
00:33:57Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_973393066.tmp
00:33:57Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:33:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:33:57:: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-574-105e17f5b4-ice36-b480 :: integration :: Sun Jul 27 00:33:49 UTC 2025
00:33:57 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:33:57:: publishing :: omero#OmeroJava-test
00:33:57 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-105e17f5b4-ice36-b480.jar
00:33:57 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-105e17f5b4-ice36-b480.xml
00:33:5700:33:57build-eclipse:
00:33:57No sub-builds to iterate on
00:33:57Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:33:5700:33:57retrieve:
00:33:57:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:33:57:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:34:0000:34:00prepare:
00:34:00Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:34:0100:34:01release-clients:
00:34:01Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-574-105e17f5b4-ice36-b480.zip
00:34:0600:34:06release-zip:
00:34:06Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-574-105e17f5b4-ice36-b480.zip
00:34:1700:34:17BUILD SUCCESSFUL
00:34:17Total time: 53 seconds
00:34:17++ '[' -d .git ']'
00:34:17++ python3 ./build.py release-src
00:34:17Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:34:1800:34:18release-src-git:
00:34:18Releasing openmicroscopy-5.6.3-574-105e17f5b4-ice36-b480
00:34:19 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-105e17f5b4-ice36-b480.zip
00:34:19 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-105e17f5b4-ice36-b480-base.zip
00:34:2100:34:21BUILD SUCCESSFUL
00:34:21Total time: 3 seconds
00:34:21++ echo BUILD_NUMBER=480
00:34:21++ echo OMERO_BRANCH=merge_ci
00:34:21++ git_info
00:34:21+++ git rev-parse HEAD
00:34:21++ HEAD=105e17f5b4a3aaf034fad5bb33d6ccf266694b57
00:34:21++ git log --max-count=1 105e17f5b4a3aaf034fad5bb33d6ccf266694b57
00:34:21++ env
00:34:21++ sort
00:34:21Archiving artifacts
00:34:44Finished: SUCCESS
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