00:42:57Started by upstream project "Trigger" build number 58000:42:57originally caused by:
00:42:57 Started by timer
00:42:57Running as SYSTEM
00:42:57Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:42:57The recommended git tool is: NONE
00:42:57No credentials specified
00:42:57 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:42:57Fetching changes from the remote Git repository
00:42:57 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:42:57Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:42:57 > git --version # timeout=10
00:42:57 > git --version # 'git version 2.43.5'
00:42:57 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:42:57 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:42:57Checking out Revision cc990c40ae6520059a5818e1084a35e6496b0af4 (origin/merge_ci)
00:42:57 > git config core.sparsecheckout # timeout=10
00:42:57 > git checkout -f cc990c40ae6520059a5818e1084a35e6496b0af4 # timeout=10
00:42:57Commit message: "Add version.properties to etc/omero.properties"
00:42:57 > git rev-list --no-walk 57c0bbd105ff12692223e21c43eeab0ef2e51e93 # timeout=10
00:42:57Cleaning workspace
00:42:57 > git rev-parse --verify HEAD # timeout=10
00:42:57Resetting working tree
00:42:57 > git reset --hard # timeout=10
00:42:57 > git clean -fdx # timeout=10
00:42:57Copied 6 artifacts from "OMERO-python-superbuild-build" build number 48200:42:58[OMERO-build] $ /bin/bash -xe /tmp/jenkins9488418696629203875.sh
00:42:58+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
00:42:58+ cd src
00:42:58+ export OMERO_BRANCH=merge_ci
00:42:58+ OMERO_BRANCH=merge_ci
00:42:58+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:42:58+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:42:58+ source /home/omero/settings.env
00:42:58++ OMERO_DB_HOST=pg
00:42:58++ OMERO_DB_USER=postgres
00:42:58++ OMERO_DB_PASS=
00:42:58++ OMERO_ROOT_PASS=omero
00:42:58++ OMERO_DATA_DIR=/OMERO
00:42:58++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:42:58+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:43:01+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:43:02Collecting zeroc-ice==3.6.5
00:43:02 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:43:04 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 16.9 MB/s eta 0:00:00
00:43:04Installing collected packages: zeroc-ice
00:43:05Successfully installed zeroc-ice-3.6.5
00:43:0500:43:05[notice] A new release of pip available: 22.3.1 -> 25.2
00:43:05[notice] To update, run: python3.11 -m pip install --upgrade pip
00:43:05+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:43:05Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:43:05Collecting setuptools<66
00:43:05 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:43:05Collecting omero-py
00:43:06 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB)
00:43:06Collecting urllib3<2
00:43:06 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:43:06Collecting appdirs
00:43:06 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:43:06Collecting future
00:43:06 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:43:06Collecting numpy<3
00:43:06 Using cached numpy-2.3.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:43:07Collecting Pillow>=10.0.0
00:43:07 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
00:43:07Collecting PyYAML
00:43:07 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:43:07Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:43:07Collecting requests
00:43:07 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
00:43:07Collecting portalocker
00:43:07 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:43:07Collecting charset_normalizer<4,>=2
00:43:07 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
00:43:07Collecting idna<4,>=2.5
00:43:07 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:43:07Collecting certifi>=2017.4.17
00:43:07 Using cached certifi-2025.8.3-py3-none-any.whl (161 kB)
00:43:07Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:43:07 Attempting uninstall: setuptools
00:43:07 Found existing installation: setuptools 65.5.1
00:43:08 Uninstalling setuptools-65.5.1:
00:43:08 Successfully uninstalled setuptools-65.5.1
00:43:13Successfully installed Pillow-11.3.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.8.3 charset_normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.3.2 omero-py-5.21.0 portalocker-3.2.0 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20
00:43:1300:43:13[notice] A new release of pip available: 22.3.1 -> 25.2
00:43:13[notice] To update, run: python3.11 -m pip install --upgrade pip
00:43:13+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:43:13++ deactivate nondestructive
00:43:13++ '[' -n '' ']'
00:43:13++ '[' -n '' ']'
00:43:13++ hash -r
00:43:13++ '[' -n '' ']'
00:43:13++ unset VIRTUAL_ENV
00:43:13++ unset VIRTUAL_ENV_PROMPT
00:43:13++ '[' '!' nondestructive = nondestructive ']'
00:43:13++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:43:13++ export VIRTUAL_ENV
00:43:13++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:43:13++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:43:13++ export PATH
00:43:13++ '[' -n '' ']'
00:43:13++ '[' -z '' ']'
00:43:13++ _OLD_VIRTUAL_PS1=
00:43:13++ PS1='(omero-virtualenv) '
00:43:13++ export PS1
00:43:13++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:43:13++ export VIRTUAL_ENV_PROMPT
00:43:13++ hash -r
00:43:13+ source docs/hudson/OMERO.sh
00:43:13++ set -e
00:43:13++ set -u
00:43:13++ set -x
00:43:13++ source docs/hudson/functions.sh
00:43:13++ echo Building merge_ci
00:43:13Building merge_ci
00:43:13++ python3 ./build.py build-dev release-all
00:43:13Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:43:1400:43:14check-ivy:
00:43:14Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:43:14Created dir: /home/omero/workspace/OMERO-build/src/target
00:43:14:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:43:14:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:43:1500:43:15build-scons:
00:43:15Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:43:15No sub-builds to iterate on
00:43:15Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:43:1500:43:15buildlist:
00:43:15:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:43:15:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:43:1500:43:15clean:
00:43:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:43:15Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:43:1500:43:15python-clean:
00:43:15WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:43:15/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-cc990c40ae-ice36-b489') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:43:15 warnings.warn(
00:43:15running clean
00:43:15Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:43:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:43:1600:43:16python-clean:
00:43:16WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:43:16/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-cc990c40ae-ice36-b489') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:43:16 warnings.warn(
00:43:16running clean
00:43:16Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:43:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:43:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:43:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:43:1600:43:16python-clean:
00:43:16WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:43:16/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-cc990c40ae-ice36-b489') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:43:16 warnings.warn(
00:43:16running clean
00:43:16Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:43:16Deleting directory /home/omero/workspace/OMERO-build/src/target
00:43:1600:43:16build-scons:
00:43:16Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:43:1600:43:16build:
00:43:16No sub-builds to iterate on
00:43:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:43:16Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:43:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:43:17Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:43:1700:43:17tools-init:
00:43:17no-op
00:43:1700:43:17retrieve:
00:43:17:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:43:17:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:43:18WARNING: An illegal reflective access operation has occurred
00:43:18WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:43:18WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:43:18WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:43:18WARNING: All illegal access operations will be denied in a future release
00:43:3600:43:36prepare:
00:43:36Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:43:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:43:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:43:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:43:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:43:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:43:36Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:43:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:43:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:43:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:43:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:43:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:43:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:43:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:43:36Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:43:3600:43:36pre-compile:
00:43:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:43:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:43:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:43:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:43:36Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:43:3600:43:36compile:
00:43:36no-op
00:43:3600:43:36package:
00:43:36Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:43:3700:43:37install:
00:43:37:: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-574-cc990c40ae-ice36-b489 :: integration :: Fri Aug 08 00:43:17 UTC 2025
00:43:37 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:43:37:: publishing :: omero#omero_client
00:43:37 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-cc990c40ae-ice36-b489/omero_client-5.6.3-574-cc990c40ae-ice36-b489.jar
00:43:37 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-cc990c40ae-ice36-b489/omero_client-5.6.3-574-cc990c40ae-ice36-b489.xml
00:43:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:43:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:43:3700:43:37retrieve:
00:43:37:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:43:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:43:37Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:43:3700:43:37dist:
00:43:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:43:37Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:43:37Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:43:37Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:43:38Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:43:38Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:43:38Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:43:38Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:43:38Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:43:3800:43:38copy-licenses:
00:43:38Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:43:38Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:43:38Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:43:3800:43:38copy-history:
00:43:38Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:43:3800:43:38copy-etc:
00:43:38Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:43:38Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:43:3800:43:38copy-sql:
00:43:38Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:43:4300:43:43copy-server:
00:43:43 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:43:4300:43:43copy-client:
00:43:43Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:43:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:43:4400:43:44update-version:
00:43:44Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:43:4400:43:44create-workdirs:
00:43:44Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:43:44Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:43:4400:43:44copy-luts:
00:43:44Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:43:44Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:43:4400:43:44test-compile:
00:43:44:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:43:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:43:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:43:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:43:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:43:44Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:43:45Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:43:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:43:4500:43:45testng-init:
00:43:45:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:43:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:43:4800:43:47,793 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
00:43:4800:43:47,796 |-INFO in ch.qos.logback.classic.util.ContextInitializer@21ffedc7 - No custom configurators were discovered as a service.
00:43:4800:43:47,796 |-INFO in ch.qos.logback.classic.util.ContextInitializer@21ffedc7 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:43:4800:43:47,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@21ffedc7 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:43:4800:43:47,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:43:4800:43:47,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:43:4800:43:47,801 |-INFO in ch.qos.logback.classic.util.ContextInitializer@21ffedc7 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:43:4800:43:47,801 |-INFO in ch.qos.logback.classic.util.ContextInitializer@21ffedc7 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:43:4800:43:47,802 |-INFO in ch.qos.logback.classic.util.ContextInitializer@21ffedc7 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:43:4800:43:47,803 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:43:4800:43:47,803 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:43:4800:43:47,804 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@337d97e3 - Resource [logback.xml] occurs multiple times on the classpath.
00:43:4800:43:47,804 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@337d97e3 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:43:4800:43:47,804 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@337d97e3 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:43:4800:43:48,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:43:4800:43:48,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:43:4800:43:48,024 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:43:4800:43:48,026 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@502aa66a - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:43:4800:43:48,026 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@502aa66a - Please move "immediateFlush" property into the enclosing appender.
00:43:4800:43:48,088 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@502aa66a - Setting the "immediateFlush" property of the enclosing appender to true
00:43:4800:43:48,089 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:43:4800:43:48,089 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:43:4800:43:48,089 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:43:4800:43:48,089 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:43:4800:43:48,089 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:43:4800:43:48,090 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:43:4800:43:48,091 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5a06fcfc - End of configuration.
00:43:4800:43:48,093 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4c9a3ae - Registering current configuration as safe fallback point
00:43:4800:43:48,093 |-INFO in ch.qos.logback.classic.util.ContextInitializer@21ffedc7 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 291 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:43:4800:43:48lifecycle.test-compile:
00:43:48Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:43:48Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:43:48warning: [options] bootstrap class path not set in conjunction with -source 8
00:43:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:49import omero.grid.RawAccessRequest;
00:43:49 ^
00:43:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:49import omero.grid.RawAccessRequest;
00:43:49 ^
00:43:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:49import omero.grid.RawAccessRequest;
00:43:49 ^
00:43:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:43:49import omero.model.ImportJob;
00:43:49 ^
00:43:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:43:49import omero.model.ImportJobI;
00:43:49 ^
00:43:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:43:50 IObject link = (IObject) linkClass.newInstance();
00:43:50 ^
00:43:50 where T is a type-variable:
00:43:50 T extends Object declared in class Class
00:43:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:43:50 T copy = (T) obj.getClass().newInstance();
00:43:50 ^
00:43:50 where T is a type-variable:
00:43:50 T extends Object declared in class Class
00:43:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:50 RawAccessRequest raw = new RawAccessRequest();
00:43:50 ^
00:43:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:50 RawAccessRequest raw = new RawAccessRequest();
00:43:50 ^
00:43:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:43:50 raw.repoUuid = legacy.root().getHash().getValue();
00:43:50 ^
00:43:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:43:50 raw.command = "rm";
00:43:50 ^
00:43:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:43:50 raw.args = Arrays.asList(path);
00:43:50 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:43:51 final IObject link = linkClass.newInstance();
00:43:51 ^
00:43:51 where T is a type-variable:
00:43:51 T extends Object declared in class Class
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:43:51 originalLink.setChild(annotationClass.newInstance());
00:43:51 ^
00:43:51 where T is a type-variable:
00:43:51 T extends Object declared in class Class
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:43:51 RoiResult r = svc.findByImage(id, new RoiOptions());
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:51 final RawAccessRequest request = new RawAccessRequest();
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:51 final RawAccessRequest request = new RawAccessRequest();
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:43:51 request.repoUuid = repo.root().getHash().getValue();
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:43:51 request.command = "exists";
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:43:51 request.args = Collections.singletonList(dirPath);
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:51 final RawAccessRequest request = new RawAccessRequest();
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:43:51 final RawAccessRequest request = new RawAccessRequest();
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:43:51 request.repoUuid = repo.root().getHash().getValue();
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:43:51 request.command = "exists";
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:43:51 request.args = Collections.singletonList(dirName);
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:43:51 final ImportJob importJob = new ImportJobI();
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:43:51 final ImportJob importJob = new ImportJobI();
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:43:51 importJob.setImageName(omero.rtypes.rstring(name));
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:43:51 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:43:51 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:43:51 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:43:51 final String savedName = sent.getImageName().getValue().toString();
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:43:51 final String savedDesc = sent.getImageDescription().getValue().toString();
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:43:51 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:43:51 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:43:51 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:43:51 ^
00:43:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:43:51 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:43:51 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:43:52 RoiResult r = svc.findByImage(image.getId().getValue(),
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:43:52 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:43:52 table = svc.getTable(f.getId().getValue());
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:43:52 RoiResult r = svc.findByImage(image.getId().getValue(),
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:43:52 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:43:52 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:43:52 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:43:52 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:43:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:43:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:43:52 svc.getShapeStatsRestricted(
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:43:52 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:43:52 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:43:52 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:43:52 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:43:52 request.typesToIgnore = Collections.singletonList("Annotation");
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:43:52 request.typesToIgnore = Collections.singletonList("Annotation");
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:43:52 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:43:52 p2.setRelatedTo(p1);
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:43:52 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:43:52 pixels1.setRelatedTo(pixels2);
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:43:52 Pixels pixels = pixels1.getRelatedTo();
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:43:52 Assert.assertNull(pixels1.getRelatedTo());
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:43:52 pixels1.setRelatedTo(pixels2);
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:43:52 Pixels pixels = pixels1.getRelatedTo();
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:43:52 Assert.assertNull(pixels1.getRelatedTo());
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:43:52 ^
00:43:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:43:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:43:52 ^
00:43:52Note: Some input files use unchecked or unsafe operations.
00:43:52Note: Recompile with -Xlint:unchecked for details.
00:43:5288 warnings
00:43:53Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2068077916.tmp
00:43:53Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:43:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:43:53:: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-574-cc990c40ae-ice36-b489 :: integration :: Fri Aug 08 00:43:45 UTC 2025
00:43:53 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:43:53:: publishing :: omero#OmeroJava-test
00:43:53 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-cc990c40ae-ice36-b489.jar
00:43:53 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-cc990c40ae-ice36-b489.xml
00:43:5300:43:53build-eclipse:
00:43:53No sub-builds to iterate on
00:43:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:43:5300:43:53retrieve:
00:43:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:43:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:43:5500:43:55prepare:
00:43:55Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:43:5600:43:56release-clients:
00:43:56Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-574-cc990c40ae-ice36-b489.zip
00:44:0200:44:02release-zip:
00:44:02Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-574-cc990c40ae-ice36-b489.zip
00:44:1300:44:13BUILD SUCCESSFUL
00:44:13Total time: 59 seconds
00:44:13++ '[' -d .git ']'
00:44:13++ python3 ./build.py release-src
00:44:13Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:44:1400:44:14release-src-git:
00:44:14Releasing openmicroscopy-5.6.3-574-cc990c40ae-ice36-b489
00:44:15 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-cc990c40ae-ice36-b489.zip
00:44:15 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-cc990c40ae-ice36-b489-base.zip
00:44:1700:44:17BUILD SUCCESSFUL
00:44:17Total time: 3 seconds
00:44:17++ echo BUILD_NUMBER=489
00:44:17++ echo OMERO_BRANCH=merge_ci
00:44:17++ git_info
00:44:17+++ git rev-parse HEAD
00:44:17++ HEAD=cc990c40ae6520059a5818e1084a35e6496b0af4
00:44:17++ git log --max-count=1 cc990c40ae6520059a5818e1084a35e6496b0af4
00:44:17++ env
00:44:17++ sort
00:44:17Archiving artifacts
00:44:41Finished: SUCCESS
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