01:22:31Started by upstream project "Trigger" build number 5701:22:31originally caused by:
01:22:31 Started by timer
01:22:31Running as SYSTEM
01:22:31Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:22:31The recommended git tool is: NONE
01:22:31No credentials specified
01:22:31 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:22:31Fetching changes from the remote Git repository
01:22:31 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:22:31Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:22:31 > git --version # timeout=10
01:22:31 > git --version # 'git version 2.52.0'
01:22:31 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:22:36 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:22:36Checking out Revision ec2076abaea9240d9cb00f32bafa1a0fdbff175f (origin/merge_ci)
01:22:36 > git config core.sparsecheckout # timeout=10
01:22:36 > git checkout -f ec2076abaea9240d9cb00f32bafa1a0fdbff175f # timeout=10
01:22:40Commit message: "Add version.properties to etc/omero.properties"
01:22:40 > git rev-list --no-walk fe2469f5c9ffc68d4b616d055a4376b6719e2dfe # timeout=10
01:22:40Cleaning workspace
01:22:40 > git rev-parse --verify HEAD # timeout=10
01:22:40Resetting working tree
01:22:40 > git reset --hard # timeout=10
01:22:40 > git clean -fdx # timeout=10
01:23:08Copied 6 artifacts from "OMERO-python-superbuild-build" build number 4201:23:08[OMERO-build] $ /bin/bash -xe /tmp/jenkins14263772259032109295.sh
01:23:08+ mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz .
01:23:08+ cd src
01:23:08+ export OMERO_BRANCH=merge_ci
01:23:08+ OMERO_BRANCH=merge_ci
01:23:08+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:23:08+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:23:33+ source /home/omero/settings.env
01:23:33++ OMERO_DB_HOST=pg
01:23:33++ OMERO_DB_USER=postgres
01:23:33++ OMERO_DB_PASS=
01:23:33++ OMERO_ROOT_PASS=omero
01:23:33++ OMERO_DATA_DIR=/OMERO
01:23:33++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:23:33+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:23:54+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl01:23:55Collecting zeroc-ice==3.6.5
01:23:56 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:23:59 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.8 MB/s eta 0:00:00
01:23:59Installing collected packages: zeroc-ice
01:24:02Successfully installed zeroc-ice-3.6.5
01:24:0201:24:02[notice] A new release of pip available: 22.3.1 -> 26.2.1
01:24:02[notice] To update, run: python3.11 -m pip install --upgrade pip
01:24:02+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:24:03Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:24:04Collecting setuptools<66
01:24:04 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:24:04Collecting omero-py
01:24:04 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
01:24:04Collecting appdirs
01:24:04 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:24:04Collecting future
01:24:04 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:24:05Collecting numpy<3,>=2
01:24:05 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:24:06Collecting Pillow>=10.0.0
01:24:06 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:24:06Collecting PyYAML
01:24:06 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:24:06Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:24:06Collecting requests
01:24:06 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:24:06Collecting portalocker
01:24:06 Using cached portalocker-4.1.0-py3-none-any.whl (65 kB)
01:24:07Collecting charset_normalizer<4,>=2
01:24:07 Downloading charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB)
01:24:07 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 262.3/262.3 kB 3.3 MB/s eta 0:00:00
01:24:07Collecting idna<4,>=2.5
01:24:07 Using cached idna-3.18-py3-none-any.whl (65 kB)
01:24:07Collecting urllib3<3,>=1.26
01:24:07 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:24:07Collecting certifi>=2023.5.7
01:24:08 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
01:24:08Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
01:24:09 Attempting uninstall: setuptools
01:24:09 Found existing installation: setuptools 65.5.1
01:24:09 Uninstalling setuptools-65.5.1:
01:24:10 Successfully uninstalled setuptools-65.5.1
01:25:01Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.5.1 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0
01:25:0101:25:01[notice] A new release of pip available: 22.3.1 -> 26.2.1
01:25:01[notice] To update, run: python3.11 -m pip install --upgrade pip
01:25:01+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:25:01++ deactivate nondestructive
01:25:01++ '[' -n '' ']'
01:25:01++ '[' -n '' ']'
01:25:01++ hash -r
01:25:01++ '[' -n '' ']'
01:25:01++ unset VIRTUAL_ENV
01:25:01++ unset VIRTUAL_ENV_PROMPT
01:25:01++ '[' '!' nondestructive = nondestructive ']'
01:25:01++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:25:01++ export VIRTUAL_ENV
01:25:01++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:25:01++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:25:01++ export PATH
01:25:01++ '[' -n '' ']'
01:25:01++ '[' -z '' ']'
01:25:01++ _OLD_VIRTUAL_PS1=
01:25:01++ PS1='(omero-virtualenv) '
01:25:01++ export PS1
01:25:01++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:25:01++ export VIRTUAL_ENV_PROMPT
01:25:01++ hash -r
01:25:01+ source docs/hudson/OMERO.sh
01:25:01++ set -e
01:25:01++ set -u
01:25:01++ set -x
01:25:01++ source docs/hudson/functions.sh
01:25:01++ echo Building merge_ci
01:25:01Building merge_ci
01:25:01++ python3 ./build.py build-dev release-all
01:25:01Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:25:0201:25:02check-ivy:
01:25:02Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:25:02Created dir: /home/omero/workspace/OMERO-build/src/target
01:25:02:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:25:02:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:25:0401:25:04build-scons:
01:25:04Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:25:05No sub-builds to iterate on
01:25:06Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:25:0601:25:06buildlist:
01:25:06:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:25:06:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:25:0601:25:06clean:
01:25:06Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:25:07Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:25:0701:25:07python-clean:
01:25:07WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:25:07/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-ec2076abae-ice36-b49') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:25:07 warnings.warn(
01:25:07running clean
01:25:07Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:25:08Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:25:0801:25:08python-clean:
01:25:08WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:25:08/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-ec2076abae-ice36-b49') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:25:08 warnings.warn(
01:25:08running clean
01:25:08Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:25:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:25:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:25:09Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:25:1001:25:10python-clean:
01:25:10WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:25:10/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-643-ec2076abae-ice36-b49') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:25:10 warnings.warn(
01:25:10running clean
01:25:10Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:25:10Deleting directory /home/omero/workspace/OMERO-build/src/target
01:25:1101:25:11build-scons:
01:25:11Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:25:1301:25:13build:
01:25:13No sub-builds to iterate on
01:25:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:25:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:25:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:25:14Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:25:1401:25:14tools-init:
01:25:14no-op
01:25:1401:25:14retrieve:
01:25:14:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:25:14:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:26:0801:26:08prepare:
01:26:08Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:26:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:26:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:26:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:26:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:26:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:26:08Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:26:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:26:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:26:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:26:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:26:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:26:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:26:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:26:08Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:26:0801:26:08pre-compile:
01:26:08Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:26:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:26:20Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:26:25Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:26:25Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:26:2701:26:27compile:
01:26:27no-op
01:26:2801:26:28package:
01:26:28Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:26:3201:26:32install:
01:26:32:: delivering :: omero#omero_client;working@9dd684e5747f :: 5.6.3-643-ec2076abae-ice36-b49 :: integration :: Sun Aug 16 01:25:13 UTC 2026
01:26:32 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:26:32:: publishing :: omero#omero_client
01:26:32 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-643-ec2076abae-ice36-b49/omero_client-5.6.3-643-ec2076abae-ice36-b49.jar
01:26:32 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-643-ec2076abae-ice36-b49/omero_client-5.6.3-643-ec2076abae-ice36-b49.xml
01:26:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:26:33Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:26:3301:26:33retrieve:
01:26:33:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:26:33:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:26:34Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:26:3401:26:34dist:
01:26:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:26:34Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:26:34Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:26:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:26:35Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:26:35Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:26:35Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:26:36Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:26:36Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:26:3701:26:37copy-licenses:
01:26:37Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:26:37Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:26:37Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:26:3801:26:38copy-history:
01:26:38Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:26:3801:26:38copy-etc:
01:26:38Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:26:38Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:26:3901:26:39copy-sql:
01:26:39Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:26:5501:26:55copy-server:
01:26:55 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
01:27:0501:27:05copy-client:
01:27:05Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:27:09 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
01:27:1801:27:18update-version:
01:27:18Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:27:1801:27:18create-workdirs:
01:27:18Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:27:18Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:27:18Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp
01:27:1801:27:18copy-luts:
01:27:18Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:27:18Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:27:1901:27:19test-compile:
01:27:19:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:27:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:27:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:27:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:27:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:27:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:27:21Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:27:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:27:2101:27:21testng-init:
01:27:21:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:27:21:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:27:3101:27:30,810 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
01:27:3101:27:30,813 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - No custom configurators were discovered as a service.
01:27:3101:27:30,813 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:27:3101:27:30,817 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:27:3101:27:30,821 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:27:3101:27:30,824 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:27:3101:27:30,825 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 8 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:27:3101:27:30,825 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:27:3101:27:30,827 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:27:3101:27:30,831 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:27:3101:27:30,832 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:27:3101:27:30,834 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs multiple times on the classpath.
01:27:3101:27:30,834 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:27:3101:27:30,834 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@22457838 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:27:3101:27:31,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:27:3101:27:31,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:27:3101:27:31,095 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:27:3101:27:31,097 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:27:3101:27:31,097 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - Please move "immediateFlush" property into the enclosing appender.
01:27:3101:27:31,171 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7a9794bd - Setting the "immediateFlush" property of the enclosing appender to true
01:27:3101:27:31,172 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:27:3101:27:31,172 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:27:3101:27:31,172 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:27:3101:27:31,172 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:27:3101:27:31,172 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:27:3101:27:31,172 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:27:3101:27:31,174 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@297727ab - End of configuration.
01:27:3101:27:31,176 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@47585784 - Registering current configuration as safe fallback point
01:27:3101:27:31,176 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6aa09c35 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 349 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:27:3101:27:31lifecycle.test-compile:
01:27:31Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:27:31Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:27:31warning: [options] bootstrap class path not set in conjunction with -source 8
01:27:31warning: [options] source value 8 is obsolete and will be removed in a future release
01:27:31warning: [options] target value 8 is obsolete and will be removed in a future release
01:27:31warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
01:27:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:27:33import omero.grid.RawAccessRequest;
01:27:33 ^
01:27:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:27:33import omero.grid.RawAccessRequest;
01:27:33 ^
01:27:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:27:33import omero.grid.RawAccessRequest;
01:27:33 ^
01:27:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:27:33import omero.model.ImportJob;
01:27:33 ^
01:27:33/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:27:33import omero.model.ImportJobI;
01:27:33 ^
01:27:34/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:27:34 IObject link = (IObject) linkClass.newInstance();
01:27:34 ^
01:27:34 where T is a type-variable:
01:27:34 T extends Object declared in class Class
01:27:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:27:35 T copy = (T) obj.getClass().newInstance();
01:27:35 ^
01:27:35 where T is a type-variable:
01:27:35 T extends Object declared in class Class
01:27:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:27:35 RawAccessRequest raw = new RawAccessRequest();
01:27:35 ^
01:27:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:27:35 RawAccessRequest raw = new RawAccessRequest();
01:27:35 ^
01:27:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:27:35 raw.repoUuid = legacy.root().getHash().getValue();
01:27:35 ^
01:27:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:27:35 raw.command = "rm";
01:27:35 ^
01:27:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:27:35 raw.args = Arrays.asList(path);
01:27:35 ^
01:27:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:27:35 final IObject link = linkClass.newInstance();
01:27:35 ^
01:27:35 where T is a type-variable:
01:27:35 T extends Object declared in class Class
01:27:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:27:35 originalLink.setChild(annotationClass.newInstance());
01:27:35 ^
01:27:35 where T is a type-variable:
01:27:35 T extends Object declared in class Class
01:27:35/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:27:35 RoiResult r = svc.findByImage(id, new RoiOptions());
01:27:35 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:27:36 final RawAccessRequest request = new RawAccessRequest();
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:27:36 final RawAccessRequest request = new RawAccessRequest();
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:27:36 request.repoUuid = repo.root().getHash().getValue();
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:27:36 request.command = "exists";
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:27:36 request.args = Collections.singletonList(dirPath);
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:27:36 final RawAccessRequest request = new RawAccessRequest();
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:27:36 final RawAccessRequest request = new RawAccessRequest();
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:27:36 request.repoUuid = repo.root().getHash().getValue();
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:27:36 request.command = "exists";
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:27:36 request.args = Collections.singletonList(dirName);
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:27:36 final ImportJob importJob = new ImportJobI();
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:27:36 final ImportJob importJob = new ImportJobI();
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:27:36 importJob.setImageName(omero.rtypes.rstring(name));
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:27:36 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:27:36 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:27:36 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:27:36 final String savedName = sent.getImageName().getValue().toString();
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:27:36 final String savedDesc = sent.getImageDescription().getValue().toString();
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:27:36 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:27:36 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:27:36 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:27:36 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:27:36 RoiResult r = svc.findByImage(image.getId().getValue(),
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:27:36 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:27:36 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:27:36 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:27:36 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:27:36 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:27:36 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:27:36 table = svc.getTable(f.getId().getValue());
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:27:36 RoiResult r = svc.findByImage(image.getId().getValue(),
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:27:36 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:27:36 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:27:36 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:27:36 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:27:36 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:27:36 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:27:36 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:27:36 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
01:27:36 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:27:36 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:27:36 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:27:36 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:27:36 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:27:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:27:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:27:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:27:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:27:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:27:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:27:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
01:27:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:27:36 svc.getShapeStatsRestricted(
01:27:36 ^
01:27:36/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:27:36 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:27:36 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:27:37 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:27:37 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:27:37 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:27:37 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:27:37 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:27:37 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:27:37 request.typesToIgnore = Collections.singletonList("Annotation");
01:27:37 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:27:37 request.typesToIgnore = Collections.singletonList("Annotation");
01:27:37 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:27:37 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:27:37 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:27:37 p2.setRelatedTo(p1);
01:27:37 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:27:37 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:27:37 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:27:37 pixels1.setRelatedTo(pixels2);
01:27:37 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:27:37 Pixels pixels = pixels1.getRelatedTo();
01:27:37 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:27:37 Assert.assertNull(pixels1.getRelatedTo());
01:27:37 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:27:37 pixels1.setRelatedTo(pixels2);
01:27:37 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:27:37 Pixels pixels = pixels1.getRelatedTo();
01:27:37 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:27:37 Assert.assertNull(pixels1.getRelatedTo());
01:27:37 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:27:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:27:37 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:27:37 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:27:37 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:27:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:27:37 ^
01:27:37/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:27:37 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:27:37 ^
01:27:38Note: Some input files use unchecked or unsafe operations.
01:27:38Note: Recompile with -Xlint:unchecked for details.
01:27:3891 warnings
01:27:38Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1994309299.tmp
01:27:38Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:27:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:27:38:: delivering :: omero#OmeroJava-test;working@9dd684e5747f :: 5.6.3-643-ec2076abae-ice36-b49 :: integration :: Sun Aug 16 01:27:21 UTC 2026
01:27:38 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:27:38:: publishing :: omero#OmeroJava-test
01:27:38 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-643-ec2076abae-ice36-b49.jar
01:27:38 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-643-ec2076abae-ice36-b49.xml
01:27:3801:27:38build-eclipse:
01:27:38No sub-builds to iterate on
01:27:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:27:3901:27:39retrieve:
01:27:39:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:27:39:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:27:4501:27:45prepare:
01:27:45Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:27:4901:27:49release-clients:
01:27:49Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-643-ec2076abae-ice36-b49.zip
01:27:5501:27:55release-zip:
01:27:55Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-643-ec2076abae-ice36-b49.zip
01:28:0701:28:07BUILD SUCCESSFUL
01:28:07Total time: 3 minutes 5 seconds
01:28:07++ '[' -d .git ']'
01:28:07++ python3 ./build.py release-src
01:28:07Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:28:0801:28:08release-src-git:
01:28:08Releasing openmicroscopy-5.6.3-643-ec2076abae-ice36-b49
01:28:10 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-643-ec2076abae-ice36-b49.zip
01:28:10 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-643-ec2076abae-ice36-b49-base.zip
01:28:1101:28:11BUILD SUCCESSFUL
01:28:11Total time: 4 seconds
01:28:11++ echo BUILD_NUMBER=49
01:28:11++ echo OMERO_BRANCH=merge_ci
01:28:11++ git_info
01:28:11+++ git rev-parse HEAD
01:28:11++ HEAD=ec2076abaea9240d9cb00f32bafa1a0fdbff175f
01:28:11++ git log --max-count=1 ec2076abaea9240d9cb00f32bafa1a0fdbff175f
01:28:11++ env
01:28:11++ sort
01:28:11Archiving artifacts
01:28:28Finished: SUCCESS
