00:38:58Started by upstream project "Trigger" build number 58300:38:58originally caused by:
00:38:58 Started by timer
00:38:58Running as SYSTEM
00:38:58Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:38:58The recommended git tool is: NONE
00:38:58No credentials specified
00:38:58 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:38:58Fetching changes from the remote Git repository
00:38:58 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:38:58Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:38:58 > git --version # timeout=10
00:38:58 > git --version # 'git version 2.43.5'
00:38:58 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:38:59 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:38:59Checking out Revision 6acd4e3b0d2e6227791b90e7d4fc2bb0cae64586 (origin/merge_ci)
00:38:59 > git config core.sparsecheckout # timeout=10
00:38:59 > git checkout -f 6acd4e3b0d2e6227791b90e7d4fc2bb0cae64586 # timeout=10
00:38:59Commit message: "Add version.properties to etc/omero.properties"
00:38:59 > git rev-list --no-walk 7fbb1ae34b337c59dfcf37f1bf118c68b8addd5d # timeout=10
00:38:59Cleaning workspace
00:38:59 > git rev-parse --verify HEAD # timeout=10
00:38:59Resetting working tree
00:38:59 > git reset --hard # timeout=10
00:38:59 > git clean -fdx # timeout=10
00:38:59Copied 6 artifacts from "OMERO-python-superbuild-build" build number 48400:38:59[OMERO-build] $ /bin/bash -xe /tmp/jenkins13845036484556992186.sh
00:38:59+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
00:38:59+ cd src
00:38:59+ export OMERO_BRANCH=merge_ci
00:38:59+ OMERO_BRANCH=merge_ci
00:38:59+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:38:59+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:38:59+ source /home/omero/settings.env
00:38:59++ OMERO_DB_HOST=pg
00:38:59++ OMERO_DB_USER=postgres
00:38:59++ OMERO_DB_PASS=
00:38:59++ OMERO_ROOT_PASS=omero
00:38:59++ OMERO_DATA_DIR=/OMERO
00:38:59++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:38:59+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:39:03+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:39:03Collecting zeroc-ice==3.6.5
00:39:03 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:39:07 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 5.0 MB/s eta 0:00:00
00:39:07Installing collected packages: zeroc-ice
00:39:08Successfully installed zeroc-ice-3.6.5
00:39:0800:39:08[notice] A new release of pip available: 22.3.1 -> 25.2
00:39:08[notice] To update, run: python3.11 -m pip install --upgrade pip
00:39:08+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:39:08Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:39:09Collecting setuptools<66
00:39:09 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:39:09Collecting omero-py
00:39:09 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB)
00:39:09Collecting urllib3<2
00:39:09 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:39:09Collecting appdirs
00:39:09 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:39:09Collecting future
00:39:09 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:39:09Collecting numpy<3
00:39:09 Using cached numpy-2.3.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:39:10Collecting Pillow>=10.0.0
00:39:10 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
00:39:10Collecting PyYAML
00:39:10 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:39:10Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:39:10Collecting requests
00:39:10 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
00:39:10Collecting portalocker
00:39:10 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:39:10Collecting charset_normalizer<4,>=2
00:39:10 Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB)
00:39:10Collecting idna<4,>=2.5
00:39:11 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:39:11Collecting certifi>=2017.4.17
00:39:11 Using cached certifi-2025.8.3-py3-none-any.whl (161 kB)
00:39:11Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:39:11 Attempting uninstall: setuptools
00:39:11 Found existing installation: setuptools 65.5.1
00:39:11 Uninstalling setuptools-65.5.1:
00:39:11 Successfully uninstalled setuptools-65.5.1
00:39:17Successfully installed Pillow-11.3.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.8.3 charset_normalizer-3.4.3 future-1.0.0 idna-3.10 numpy-2.3.2 omero-py-5.21.0 portalocker-3.2.0 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20
00:39:1700:39:17[notice] A new release of pip available: 22.3.1 -> 25.2
00:39:17[notice] To update, run: python3.11 -m pip install --upgrade pip
00:39:17+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:39:17++ deactivate nondestructive
00:39:17++ '[' -n '' ']'
00:39:17++ '[' -n '' ']'
00:39:17++ hash -r
00:39:17++ '[' -n '' ']'
00:39:17++ unset VIRTUAL_ENV
00:39:17++ unset VIRTUAL_ENV_PROMPT
00:39:17++ '[' '!' nondestructive = nondestructive ']'
00:39:17++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:39:17++ export VIRTUAL_ENV
00:39:17++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:39:17++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:39:17++ export PATH
00:39:17++ '[' -n '' ']'
00:39:17++ '[' -z '' ']'
00:39:17++ _OLD_VIRTUAL_PS1=
00:39:17++ PS1='(omero-virtualenv) '
00:39:17++ export PS1
00:39:17++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:39:17++ export VIRTUAL_ENV_PROMPT
00:39:17++ hash -r
00:39:17+ source docs/hudson/OMERO.sh
00:39:17++ set -e
00:39:17++ set -u
00:39:17++ set -x
00:39:17++ source docs/hudson/functions.sh
00:39:17++ echo Building merge_ci
00:39:17Building merge_ci
00:39:17++ python3 ./build.py build-dev release-all
00:39:17Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:39:1700:39:17check-ivy:
00:39:17Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:39:17Created dir: /home/omero/workspace/OMERO-build/src/target
00:39:18:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:1800:39:18build-scons:
00:39:18Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:39:18No sub-builds to iterate on
00:39:18Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:39:1800:39:18buildlist:
00:39:18:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:1900:39:19clean:
00:39:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:1900:39:19python-clean:
00:39:19WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:19/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-6acd4e3b0d-ice36-b491') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:19 warnings.warn(
00:39:19running clean
00:39:19Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:39:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:1900:39:19python-clean:
00:39:19WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:19/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-6acd4e3b0d-ice36-b491') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:19 warnings.warn(
00:39:19running clean
00:39:19Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:39:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:39:2000:39:20python-clean:
00:39:20WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:39:20/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-6acd4e3b0d-ice36-b491') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:39:20 warnings.warn(
00:39:20running clean
00:39:20Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:39:20Deleting directory /home/omero/workspace/OMERO-build/src/target
00:39:2000:39:20build-scons:
00:39:20Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:39:2000:39:20build:
00:39:20No sub-builds to iterate on
00:39:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:39:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:39:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:39:2000:39:20tools-init:
00:39:20no-op
00:39:2000:39:20retrieve:
00:39:20:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:39:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:39:21WARNING: An illegal reflective access operation has occurred
00:39:21WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:39:21WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:39:21WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:39:21WARNING: All illegal access operations will be denied in a future release
00:40:1200:40:12prepare:
00:40:12Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:40:12Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:40:12Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:40:12Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:12Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:12Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:12Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:40:12Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:12Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:12Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:12Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:12Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:12Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:12Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:12Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:1200:40:12pre-compile:
00:40:12Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:12Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:12Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:12Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:13Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:1300:40:13compile:
00:40:13no-op
00:40:1300:40:13package:
00:40:13Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:40:1300:40:13install:
00:40:13:: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-574-6acd4e3b0d-ice36-b491 :: integration :: Mon Aug 11 00:39:20 UTC 2025
00:40:13 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:40:13:: publishing :: omero#omero_client
00:40:13 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-6acd4e3b0d-ice36-b491/omero_client-5.6.3-574-6acd4e3b0d-ice36-b491.jar
00:40:13 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-6acd4e3b0d-ice36-b491/omero_client-5.6.3-574-6acd4e3b0d-ice36-b491.xml
00:40:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:1400:40:14retrieve:
00:40:14:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:14:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:14Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:40:1400:40:14dist:
00:40:14Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:40:14Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:40:14Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:40:14Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:40:14Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:40:14Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:40:14Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:40:14Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:40:14Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:40:1400:40:14copy-licenses:
00:40:14Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:40:14Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:40:14Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:40:1400:40:14copy-history:
00:40:14Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:40:1400:40:14copy-etc:
00:40:14Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:40:14Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:40:1400:40:14copy-sql:
00:40:14Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:40:1900:40:19copy-server:
00:40:19 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:40:1900:40:19copy-client:
00:40:19Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:40:20 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:40:2000:40:20update-version:
00:40:20Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:40:2000:40:20create-workdirs:
00:40:20Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:40:20Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:40:2000:40:20copy-luts:
00:40:20Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:40:20Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:40:2000:40:20test-compile:
00:40:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:20Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:40:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:2100:40:21testng-init:
00:40:21:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:21:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:2500:40:24,841 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
00:40:2500:40:24,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@451cef5 - No custom configurators were discovered as a service.
00:40:2500:40:24,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@451cef5 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:40:2500:40:24,847 |-INFO in ch.qos.logback.classic.util.ContextInitializer@451cef5 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:40:2500:40:24,847 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:40:2500:40:24,847 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:40:2500:40:24,848 |-INFO in ch.qos.logback.classic.util.ContextInitializer@451cef5 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:40:2500:40:24,848 |-INFO in ch.qos.logback.classic.util.ContextInitializer@451cef5 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:40:2500:40:24,850 |-INFO in ch.qos.logback.classic.util.ContextInitializer@451cef5 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:40:2500:40:24,850 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:40:2500:40:24,850 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:40:2500:40:24,851 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@21ffedc7 - Resource [logback.xml] occurs multiple times on the classpath.
00:40:2500:40:24,851 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@21ffedc7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:40:2500:40:24,851 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@21ffedc7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:40:2500:40:25,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:40:2500:40:25,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:40:2500:40:25,070 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:40:2500:40:25,072 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@337d97e3 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:40:2500:40:25,072 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@337d97e3 - Please move "immediateFlush" property into the enclosing appender.
00:40:2500:40:25,135 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@337d97e3 - Setting the "immediateFlush" property of the enclosing appender to true
00:40:2500:40:25,136 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:40:2500:40:25,136 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:40:2500:40:25,136 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:40:2500:40:25,136 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:40:2500:40:25,136 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:40:2500:40:25,137 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:40:2500:40:25,138 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@502aa66a - End of configuration.
00:40:2500:40:25,140 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5a06fcfc - Registering current configuration as safe fallback point
00:40:2500:40:25,140 |-INFO in ch.qos.logback.classic.util.ContextInitializer@451cef5 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 290 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:40:2500:40:25lifecycle.test-compile:
00:40:25Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:25Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:25warning: [options] bootstrap class path not set in conjunction with -source 8
00:40:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:26import omero.grid.RawAccessRequest;
00:40:26 ^
00:40:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:26import omero.grid.RawAccessRequest;
00:40:26 ^
00:40:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:26import omero.grid.RawAccessRequest;
00:40:26 ^
00:40:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:26import omero.model.ImportJob;
00:40:26 ^
00:40:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:40:26import omero.model.ImportJobI;
00:40:26 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:40:27 IObject link = (IObject) linkClass.newInstance();
00:40:27 ^
00:40:27 where T is a type-variable:
00:40:27 T extends Object declared in class Class
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:40:27 T copy = (T) obj.getClass().newInstance();
00:40:27 ^
00:40:27 where T is a type-variable:
00:40:27 T extends Object declared in class Class
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:27 RawAccessRequest raw = new RawAccessRequest();
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:27 RawAccessRequest raw = new RawAccessRequest();
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:27 raw.repoUuid = legacy.root().getHash().getValue();
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:27 raw.command = "rm";
00:40:27 ^
00:40:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:27 raw.args = Arrays.asList(path);
00:40:27 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:40:28 final IObject link = linkClass.newInstance();
00:40:28 ^
00:40:28 where T is a type-variable:
00:40:28 T extends Object declared in class Class
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:40:28 originalLink.setChild(annotationClass.newInstance());
00:40:28 ^
00:40:28 where T is a type-variable:
00:40:28 T extends Object declared in class Class
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:28 RoiResult r = svc.findByImage(id, new RoiOptions());
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:28 final RawAccessRequest request = new RawAccessRequest();
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:28 final RawAccessRequest request = new RawAccessRequest();
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:28 request.repoUuid = repo.root().getHash().getValue();
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:28 request.command = "exists";
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:28 request.args = Collections.singletonList(dirPath);
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:28 final RawAccessRequest request = new RawAccessRequest();
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:40:28 final RawAccessRequest request = new RawAccessRequest();
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:40:28 request.repoUuid = repo.root().getHash().getValue();
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:40:28 request.command = "exists";
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:40:28 request.args = Collections.singletonList(dirName);
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:28 final ImportJob importJob = new ImportJobI();
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:40:28 final ImportJob importJob = new ImportJobI();
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:40:28 importJob.setImageName(omero.rtypes.rstring(name));
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:40:28 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:28 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:28 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:40:28 final String savedName = sent.getImageName().getValue().toString();
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:40:28 final String savedDesc = sent.getImageDescription().getValue().toString();
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:28 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:40:28 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:40:28 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:40:28 ^
00:40:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:40:28 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:40:28 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:29 RoiResult r = svc.findByImage(image.getId().getValue(),
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:29 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:29 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:40:29 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:40:29 table = svc.getTable(f.getId().getValue());
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:40:29 RoiResult r = svc.findByImage(image.getId().getValue(),
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:40:29 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:40:29 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:40:29 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:40:29 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:29 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:29 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:29 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:29 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:40:29 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:29 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:29 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:29 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:29 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:40:29 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:40:29 svc.getShapeStatsRestricted(
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:40:29 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:29 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:29 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:29 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:29 request.typesToIgnore = Collections.singletonList("Annotation");
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:40:29 request.typesToIgnore = Collections.singletonList("Annotation");
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:29 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:29 p2.setRelatedTo(p1);
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:29 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:29 pixels1.setRelatedTo(pixels2);
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:29 Pixels pixels = pixels1.getRelatedTo();
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:29 Assert.assertNull(pixels1.getRelatedTo());
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:40:29 pixels1.setRelatedTo(pixels2);
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:29 Pixels pixels = pixels1.getRelatedTo();
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:40:29 Assert.assertNull(pixels1.getRelatedTo());
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:29 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:40:29 ^
00:40:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:40:29 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:40:29 ^
00:40:29Note: Some input files use unchecked or unsafe operations.
00:40:29Note: Recompile with -Xlint:unchecked for details.
00:40:2988 warnings
00:40:29Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_620982600.tmp
00:40:29Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:40:30:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:30:: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-574-6acd4e3b0d-ice36-b491 :: integration :: Mon Aug 11 00:40:20 UTC 2025
00:40:30 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:40:30:: publishing :: omero#OmeroJava-test
00:40:30 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-6acd4e3b0d-ice36-b491.jar
00:40:30 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-6acd4e3b0d-ice36-b491.xml
00:40:3000:40:30build-eclipse:
00:40:30No sub-builds to iterate on
00:40:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:3000:40:30retrieve:
00:40:30:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:30:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:3200:40:32prepare:
00:40:32Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:40:3300:40:33release-clients:
00:40:33Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-574-6acd4e3b0d-ice36-b491.zip
00:40:3900:40:39release-zip:
00:40:39Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-574-6acd4e3b0d-ice36-b491.zip
00:40:5000:40:50BUILD SUCCESSFUL
00:40:50Total time: 1 minute 33 seconds
00:40:50++ '[' -d .git ']'
00:40:50++ python3 ./build.py release-src
00:40:50Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:40:5100:40:51release-src-git:
00:40:51Releasing openmicroscopy-5.6.3-574-6acd4e3b0d-ice36-b491
00:40:52 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-6acd4e3b0d-ice36-b491.zip
00:40:52 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-6acd4e3b0d-ice36-b491-base.zip
00:40:5300:40:53BUILD SUCCESSFUL
00:40:53Total time: 3 seconds
00:40:54++ echo BUILD_NUMBER=491
00:40:54++ echo OMERO_BRANCH=merge_ci
00:40:54++ git_info
00:40:54+++ git rev-parse HEAD
00:40:54++ HEAD=6acd4e3b0d2e6227791b90e7d4fc2bb0cae64586
00:40:54++ git log --max-count=1 6acd4e3b0d2e6227791b90e7d4fc2bb0cae64586
00:40:54++ env
00:40:54++ sort
00:40:54Archiving artifacts
00:41:18Finished: SUCCESS
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