00:40:36Started by upstream project "Trigger" build number 58600:40:36originally caused by:
00:40:36 Started by timer
00:40:36Running as SYSTEM
00:40:36Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:40:36The recommended git tool is: NONE
00:40:36No credentials specified
00:40:36 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:40:36Fetching changes from the remote Git repository
00:40:36 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:40:36Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:40:36 > git --version # timeout=10
00:40:36 > git --version # 'git version 2.43.5'
00:40:36 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:40:36 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:40:36Checking out Revision 579f65b75e2a33a87075098e76ef1bd4ec7df199 (origin/merge_ci)
00:40:36 > git config core.sparsecheckout # timeout=10
00:40:36 > git checkout -f 579f65b75e2a33a87075098e76ef1bd4ec7df199 # timeout=10
00:40:36Commit message: "Add version.properties to etc/omero.properties"
00:40:36 > git rev-list --no-walk 1aaa45bda97274be67a7294d407cf919c5623de9 # timeout=10
00:40:36Cleaning workspace
00:40:36 > git rev-parse --verify HEAD # timeout=10
00:40:36Resetting working tree
00:40:36 > git reset --hard # timeout=10
00:40:36 > git clean -fdx # timeout=10
00:40:37Copied 6 artifacts from "OMERO-python-superbuild-build" build number 48700:40:37[OMERO-build] $ /bin/bash -xe /tmp/jenkins2297231691582770222.sh
00:40:37+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
00:40:37+ cd src
00:40:37+ export OMERO_BRANCH=merge_ci
00:40:37+ OMERO_BRANCH=merge_ci
00:40:37+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:40:37+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:40:37+ source /home/omero/settings.env
00:40:37++ OMERO_DB_HOST=pg
00:40:37++ OMERO_DB_USER=postgres
00:40:37++ OMERO_DB_PASS=
00:40:37++ OMERO_ROOT_PASS=omero
00:40:37++ OMERO_DATA_DIR=/OMERO
00:40:37++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:40:37+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:40:41+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:40:41Collecting zeroc-ice==3.6.5
00:40:41 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:40:43 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.7 MB/s eta 0:00:00
00:40:43Installing collected packages: zeroc-ice
00:40:44Successfully installed zeroc-ice-3.6.5
00:40:4400:40:44[notice] A new release of pip available: 22.3.1 -> 25.2
00:40:44[notice] To update, run: python3.11 -m pip install --upgrade pip
00:40:44+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:40:44Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:40:45Collecting setuptools<66
00:40:45 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:40:45Collecting omero-py
00:40:45 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB)
00:40:45Collecting urllib3<2
00:40:45 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:40:45Collecting appdirs
00:40:45 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:40:45Collecting future
00:40:45 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:40:46Collecting numpy<3
00:40:46 Using cached numpy-2.3.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:40:46Collecting Pillow>=10.0.0
00:40:46 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
00:40:46Collecting PyYAML
00:40:46 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:40:46Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:40:46Collecting requests
00:40:46 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
00:40:46Collecting portalocker
00:40:46 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:40:47Collecting charset_normalizer<4,>=2
00:40:47 Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB)
00:40:47Collecting idna<4,>=2.5
00:40:47 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:40:47Collecting certifi>=2017.4.17
00:40:47 Using cached certifi-2025.8.3-py3-none-any.whl (161 kB)
00:40:47Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:40:47 Attempting uninstall: setuptools
00:40:47 Found existing installation: setuptools 65.5.1
00:40:47 Uninstalling setuptools-65.5.1:
00:40:47 Successfully uninstalled setuptools-65.5.1
00:40:52Successfully installed Pillow-11.3.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.8.3 charset_normalizer-3.4.3 future-1.0.0 idna-3.10 numpy-2.3.2 omero-py-5.21.0 portalocker-3.2.0 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20
00:40:5200:40:52[notice] A new release of pip available: 22.3.1 -> 25.2
00:40:52[notice] To update, run: python3.11 -m pip install --upgrade pip
00:40:53+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:40:53++ deactivate nondestructive
00:40:53++ '[' -n '' ']'
00:40:53++ '[' -n '' ']'
00:40:53++ hash -r
00:40:53++ '[' -n '' ']'
00:40:53++ unset VIRTUAL_ENV
00:40:53++ unset VIRTUAL_ENV_PROMPT
00:40:53++ '[' '!' nondestructive = nondestructive ']'
00:40:53++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:40:53++ export VIRTUAL_ENV
00:40:53++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:40:53++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:40:53++ export PATH
00:40:53++ '[' -n '' ']'
00:40:53++ '[' -z '' ']'
00:40:53++ _OLD_VIRTUAL_PS1=
00:40:53++ PS1='(omero-virtualenv) '
00:40:53++ export PS1
00:40:53++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:40:53++ export VIRTUAL_ENV_PROMPT
00:40:53++ hash -r
00:40:53+ source docs/hudson/OMERO.sh
00:40:53++ set -e
00:40:53++ set -u
00:40:53++ set -x
00:40:53++ source docs/hudson/functions.sh
00:40:53++ echo Building merge_ci
00:40:53Building merge_ci
00:40:53++ python3 ./build.py build-dev release-all
00:40:53Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:40:5300:40:53check-ivy:
00:40:53Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:40:53Created dir: /home/omero/workspace/OMERO-build/src/target
00:40:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:5400:40:54build-scons:
00:40:54Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:40:54No sub-builds to iterate on
00:40:54Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:40:5400:40:54buildlist:
00:40:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:5400:40:54clean:
00:40:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:5500:40:55python-clean:
00:40:55WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:55/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-579f65b75e-ice36-b494') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:55 warnings.warn(
00:40:55running clean
00:40:55Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:40:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:5500:40:55python-clean:
00:40:55WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:55/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-579f65b75e-ice36-b494') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:55 warnings.warn(
00:40:55running clean
00:40:55Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:40:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:55Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:5600:40:56python-clean:
00:40:56WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:56/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-579f65b75e-ice36-b494') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:56 warnings.warn(
00:40:56running clean
00:40:56Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:40:56Deleting directory /home/omero/workspace/OMERO-build/src/target
00:40:5600:40:56build-scons:
00:40:56Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:40:5600:40:56build:
00:40:56No sub-builds to iterate on
00:40:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:56Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:5600:40:56tools-init:
00:40:56no-op
00:40:5600:40:56retrieve:
00:40:56:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:40:56:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:57WARNING: An illegal reflective access operation has occurred
00:40:57WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:40:57WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:40:57WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:40:57WARNING: All illegal access operations will be denied in a future release
00:41:0900:41:09prepare:
00:41:09Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:41:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:41:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:41:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:09Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:41:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:41:09Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:41:0900:41:09pre-compile:
00:41:09Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:10Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:41:1000:41:10compile:
00:41:10no-op
00:41:1000:41:10package:
00:41:10Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:41:1100:41:11install:
00:41:11:: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-574-579f65b75e-ice36-b494 :: integration :: Thu Aug 14 00:40:56 UTC 2025
00:41:11 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:41:11:: publishing :: omero#omero_client
00:41:11 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-579f65b75e-ice36-b494/omero_client-5.6.3-574-579f65b75e-ice36-b494.jar
00:41:11 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-579f65b75e-ice36-b494/omero_client-5.6.3-574-579f65b75e-ice36-b494.xml
00:41:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:11Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:1100:41:11retrieve:
00:41:11:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:41:11:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:11Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:41:1100:41:11dist:
00:41:11Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:41:11Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:41:11Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:41:11Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:41:11Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:41:11Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:41:11Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:41:11Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:41:11Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:41:1200:41:12copy-licenses:
00:41:12Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:41:12Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:41:12Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:41:1200:41:12copy-history:
00:41:12Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:41:1200:41:12copy-etc:
00:41:12Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:41:12Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:41:1200:41:12copy-sql:
00:41:12Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:41:1800:41:18copy-server:
00:41:18 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:41:1800:41:18copy-client:
00:41:18Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:41:21 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:41:2100:41:21update-version:
00:41:21Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:41:2100:41:21create-workdirs:
00:41:21Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:41:21Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:41:2100:41:21copy-luts:
00:41:21Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:41:21Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:41:2100:41:21test-compile:
00:41:21:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:41:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:41:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:41:21Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:41:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:41:2100:41:21testng-init:
00:41:21:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:41:21:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:2400:41:24,204 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
00:41:2400:41:24,207 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3eebbbf5 - No custom configurators were discovered as a service.
00:41:2400:41:24,207 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3eebbbf5 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:41:2400:41:24,210 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3eebbbf5 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:41:2400:41:24,211 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:41:2400:41:24,211 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:41:2400:41:24,212 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3eebbbf5 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:41:2400:41:24,212 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3eebbbf5 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:41:2400:41:24,213 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3eebbbf5 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:41:2400:41:24,214 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:41:2400:41:24,214 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:41:2400:41:24,215 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@451cef5 - Resource [logback.xml] occurs multiple times on the classpath.
00:41:2400:41:24,215 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@451cef5 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:41:2400:41:24,215 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@451cef5 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:41:2400:41:24,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:41:2400:41:24,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:41:2400:41:24,429 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:41:2400:41:24,431 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@21ffedc7 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:41:2400:41:24,431 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@21ffedc7 - Please move "immediateFlush" property into the enclosing appender.
00:41:2400:41:24,491 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@21ffedc7 - Setting the "immediateFlush" property of the enclosing appender to true
00:41:2400:41:24,492 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:41:2400:41:24,492 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:41:2400:41:24,492 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:41:2400:41:24,492 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:41:2400:41:24,492 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:41:2400:41:24,492 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:41:2400:41:24,493 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@337d97e3 - End of configuration.
00:41:2400:41:24,495 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@502aa66a - Registering current configuration as safe fallback point
00:41:2400:41:24,495 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3eebbbf5 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 282 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:41:2400:41:24lifecycle.test-compile:
00:41:24Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:24Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:24warning: [options] bootstrap class path not set in conjunction with -source 8
00:41:25/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:25import omero.grid.RawAccessRequest;
00:41:25 ^
00:41:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:26import omero.grid.RawAccessRequest;
00:41:26 ^
00:41:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:26import omero.grid.RawAccessRequest;
00:41:26 ^
00:41:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:26import omero.model.ImportJob;
00:41:26 ^
00:41:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:41:26import omero.model.ImportJobI;
00:41:26 ^
00:41:26/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:41:26 IObject link = (IObject) linkClass.newInstance();
00:41:26 ^
00:41:26 where T is a type-variable:
00:41:26 T extends Object declared in class Class
00:41:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:41:27 T copy = (T) obj.getClass().newInstance();
00:41:27 ^
00:41:27 where T is a type-variable:
00:41:27 T extends Object declared in class Class
00:41:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:27 RawAccessRequest raw = new RawAccessRequest();
00:41:27 ^
00:41:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:27 RawAccessRequest raw = new RawAccessRequest();
00:41:27 ^
00:41:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:27 raw.repoUuid = legacy.root().getHash().getValue();
00:41:27 ^
00:41:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:27 raw.command = "rm";
00:41:27 ^
00:41:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:27 raw.args = Arrays.asList(path);
00:41:27 ^
00:41:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:41:27 final IObject link = linkClass.newInstance();
00:41:27 ^
00:41:27 where T is a type-variable:
00:41:27 T extends Object declared in class Class
00:41:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:41:27 originalLink.setChild(annotationClass.newInstance());
00:41:27 ^
00:41:27 where T is a type-variable:
00:41:27 T extends Object declared in class Class
00:41:27/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:41:27 RoiResult r = svc.findByImage(id, new RoiOptions());
00:41:27 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:28 final RawAccessRequest request = new RawAccessRequest();
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:28 final RawAccessRequest request = new RawAccessRequest();
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:28 request.repoUuid = repo.root().getHash().getValue();
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:28 request.command = "exists";
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:28 request.args = Collections.singletonList(dirPath);
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:28 final RawAccessRequest request = new RawAccessRequest();
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:28 final RawAccessRequest request = new RawAccessRequest();
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:28 request.repoUuid = repo.root().getHash().getValue();
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:28 request.command = "exists";
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:28 request.args = Collections.singletonList(dirName);
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:28 final ImportJob importJob = new ImportJobI();
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:41:28 final ImportJob importJob = new ImportJobI();
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:41:28 importJob.setImageName(omero.rtypes.rstring(name));
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:41:28 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:28 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:28 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:41:28 final String savedName = sent.getImageName().getValue().toString();
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:41:28 final String savedDesc = sent.getImageDescription().getValue().toString();
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:28 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:28 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:41:28 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:41:28 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:41:28 RoiResult r = svc.findByImage(image.getId().getValue(),
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:28 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:28 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:28 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:28 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:41:28 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:28 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:41:28 table = svc.getTable(f.getId().getValue());
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:41:28 RoiResult r = svc.findByImage(image.getId().getValue(),
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:41:28 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:41:28 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:41:28 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:41:28 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:28 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:28 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:28 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:28 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:41:28 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:28 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:28 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:28 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:28 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:28 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:41:28 svc.getShapeStatsRestricted(
00:41:28 ^
00:41:28/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:41:28 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:41:28 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:29 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:41:29 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:29 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:41:29 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:29 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:41:29 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:29 request.typesToIgnore = Collections.singletonList("Annotation");
00:41:29 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:29 request.typesToIgnore = Collections.singletonList("Annotation");
00:41:29 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:29 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:41:29 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:29 p2.setRelatedTo(p1);
00:41:29 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:29 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:41:29 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:29 pixels1.setRelatedTo(pixels2);
00:41:29 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:29 Pixels pixels = pixels1.getRelatedTo();
00:41:29 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:29 Assert.assertNull(pixels1.getRelatedTo());
00:41:29 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:29 pixels1.setRelatedTo(pixels2);
00:41:29 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:29 Pixels pixels = pixels1.getRelatedTo();
00:41:29 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:29 Assert.assertNull(pixels1.getRelatedTo());
00:41:29 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:29 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:29 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:29 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:29 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:29 ^
00:41:29/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:29 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:29 ^
00:41:29Note: Some input files use unchecked or unsafe operations.
00:41:29Note: Recompile with -Xlint:unchecked for details.
00:41:2988 warnings
00:41:29Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_534932712.tmp
00:41:29Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:41:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:29:: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-574-579f65b75e-ice36-b494 :: integration :: Thu Aug 14 00:41:21 UTC 2025
00:41:29 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:41:29:: publishing :: omero#OmeroJava-test
00:41:29 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-579f65b75e-ice36-b494.jar
00:41:29 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-579f65b75e-ice36-b494.xml
00:41:2900:41:29build-eclipse:
00:41:29No sub-builds to iterate on
00:41:29Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:41:2900:41:29retrieve:
00:41:29:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:41:29:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:3100:41:31prepare:
00:41:31Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:41:3300:41:33release-clients:
00:41:33Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-574-579f65b75e-ice36-b494.zip
00:41:3800:41:38release-zip:
00:41:38Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-574-579f65b75e-ice36-b494.zip
00:41:4900:41:49BUILD SUCCESSFUL
00:41:49Total time: 56 seconds
00:41:49++ '[' -d .git ']'
00:41:49++ python3 ./build.py release-src
00:41:49Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:41:5000:41:50release-src-git:
00:41:50Releasing openmicroscopy-5.6.3-574-579f65b75e-ice36-b494
00:41:51 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-579f65b75e-ice36-b494.zip
00:41:51 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-579f65b75e-ice36-b494-base.zip
00:41:5300:41:53BUILD SUCCESSFUL
00:41:53Total time: 3 seconds
00:41:53++ echo BUILD_NUMBER=494
00:41:53++ echo OMERO_BRANCH=merge_ci
00:41:53++ git_info
00:41:53+++ git rev-parse HEAD
00:41:53++ HEAD=579f65b75e2a33a87075098e76ef1bd4ec7df199
00:41:53++ git log --max-count=1 579f65b75e2a33a87075098e76ef1bd4ec7df199
00:41:53++ env
00:41:53++ sort
00:41:53Archiving artifacts
00:42:17Finished: SUCCESS
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