00:34:00Started by upstream project "Trigger" build number 58800:34:00originally caused by:
00:34:00 Started by timer
00:34:00Running as SYSTEM
00:34:00Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:34:00The recommended git tool is: NONE
00:34:00No credentials specified
00:34:00 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:34:00Fetching changes from the remote Git repository
00:34:00 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:34:00Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:34:00 > git --version # timeout=10
00:34:00 > git --version # 'git version 2.43.5'
00:34:00 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:34:00 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:34:00Checking out Revision 085846c6ed6cc9e67ae861781eab5f3879b23329 (origin/merge_ci)
00:34:00 > git config core.sparsecheckout # timeout=10
00:34:01 > git checkout -f 085846c6ed6cc9e67ae861781eab5f3879b23329 # timeout=10
00:34:01Commit message: "Add version.properties to etc/omero.properties"
00:34:01 > git rev-list --no-walk 9d3f9c8ef1c3e979bd7232c81c79930f6a46bc29 # timeout=10
00:34:01Cleaning workspace
00:34:01 > git rev-parse --verify HEAD # timeout=10
00:34:01Resetting working tree
00:34:01 > git reset --hard # timeout=10
00:34:01 > git clean -fdx # timeout=10
00:34:01Copied 6 artifacts from "OMERO-python-superbuild-build" build number 48900:34:01[OMERO-build] $ /bin/bash -xe /tmp/jenkins6834686996728033906.sh
00:34:01+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
00:34:01+ cd src
00:34:01+ export OMERO_BRANCH=merge_ci
00:34:01+ OMERO_BRANCH=merge_ci
00:34:01+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:34:01+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:34:01+ source /home/omero/settings.env
00:34:01++ OMERO_DB_HOST=pg
00:34:01++ OMERO_DB_USER=postgres
00:34:01++ OMERO_DB_PASS=
00:34:01++ OMERO_ROOT_PASS=omero
00:34:01++ OMERO_DATA_DIR=/OMERO
00:34:01++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:34:01+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:34:05+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:34:05Collecting zeroc-ice==3.6.5
00:34:05 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:34:08 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.6 MB/s eta 0:00:00
00:34:08Installing collected packages: zeroc-ice
00:34:09Successfully installed zeroc-ice-3.6.5
00:34:0900:34:09[notice] A new release of pip available: 22.3.1 -> 25.2
00:34:09[notice] To update, run: python3.11 -m pip install --upgrade pip
00:34:09+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:34:09Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:34:10Collecting setuptools<66
00:34:10 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:34:10Collecting omero-py
00:34:10 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB)
00:34:10Collecting urllib3<2
00:34:10 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:34:10Collecting appdirs
00:34:10 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:34:10Collecting future
00:34:10 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:34:10Collecting numpy<3
00:34:10 Using cached numpy-2.3.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:34:11Collecting Pillow>=10.0.0
00:34:11 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
00:34:11Collecting PyYAML
00:34:11 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:34:11Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:34:11Collecting requests
00:34:11 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
00:34:11Collecting portalocker
00:34:11 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:34:11Collecting charset_normalizer<4,>=2
00:34:11 Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB)
00:34:11Collecting idna<4,>=2.5
00:34:11 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:34:11Collecting certifi>=2017.4.17
00:34:11 Using cached certifi-2025.8.3-py3-none-any.whl (161 kB)
00:34:12Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:34:12 Attempting uninstall: setuptools
00:34:12 Found existing installation: setuptools 65.5.1
00:34:12 Uninstalling setuptools-65.5.1:
00:34:12 Successfully uninstalled setuptools-65.5.1
00:34:17Successfully installed Pillow-11.3.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.8.3 charset_normalizer-3.4.3 future-1.0.0 idna-3.10 numpy-2.3.2 omero-py-5.21.0 portalocker-3.2.0 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20
00:34:1700:34:17[notice] A new release of pip available: 22.3.1 -> 25.2
00:34:17[notice] To update, run: python3.11 -m pip install --upgrade pip
00:34:18+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:34:18++ deactivate nondestructive
00:34:18++ '[' -n '' ']'
00:34:18++ '[' -n '' ']'
00:34:18++ hash -r
00:34:18++ '[' -n '' ']'
00:34:18++ unset VIRTUAL_ENV
00:34:18++ unset VIRTUAL_ENV_PROMPT
00:34:18++ '[' '!' nondestructive = nondestructive ']'
00:34:18++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:34:18++ export VIRTUAL_ENV
00:34:18++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:34:18++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:34:18++ export PATH
00:34:18++ '[' -n '' ']'
00:34:18++ '[' -z '' ']'
00:34:18++ _OLD_VIRTUAL_PS1=
00:34:18++ PS1='(omero-virtualenv) '
00:34:18++ export PS1
00:34:18++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:34:18++ export VIRTUAL_ENV_PROMPT
00:34:18++ hash -r
00:34:18+ source docs/hudson/OMERO.sh
00:34:18++ set -e
00:34:18++ set -u
00:34:18++ set -x
00:34:18++ source docs/hudson/functions.sh
00:34:18++ echo Building merge_ci
00:34:18Building merge_ci
00:34:18++ python3 ./build.py build-dev release-all
00:34:18Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:34:1800:34:18check-ivy:
00:34:18Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:34:18Created dir: /home/omero/workspace/OMERO-build/src/target
00:34:18:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:34:18:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:34:1900:34:19build-scons:
00:34:19Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:34:19No sub-builds to iterate on
00:34:19Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:34:1900:34:19buildlist:
00:34:19:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:34:19:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:34:1900:34:19clean:
00:34:19Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:34:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:34:2000:34:20python-clean:
00:34:20WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:34:20/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-085846c6ed-ice36-b496') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:34:20 warnings.warn(
00:34:20running clean
00:34:20Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:34:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:34:2000:34:20python-clean:
00:34:20WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:34:20/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-085846c6ed-ice36-b496') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:34:20 warnings.warn(
00:34:20running clean
00:34:20Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:34:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:34:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:34:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:34:2100:34:21python-clean:
00:34:21WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:34:21/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-085846c6ed-ice36-b496') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:34:21 warnings.warn(
00:34:21running clean
00:34:21Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:34:21Deleting directory /home/omero/workspace/OMERO-build/src/target
00:34:2100:34:21build-scons:
00:34:21Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:34:2100:34:21build:
00:34:21No sub-builds to iterate on
00:34:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:34:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:34:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:34:21Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:34:2100:34:21tools-init:
00:34:21no-op
00:34:2100:34:21retrieve:
00:34:21:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:34:21:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:34:22WARNING: An illegal reflective access operation has occurred
00:34:22WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:34:22WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:34:22WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:34:22WARNING: All illegal access operations will be denied in a future release
00:34:3300:34:33prepare:
00:34:33Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:34:33Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:34:33Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:34:33Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:34:33Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:34:33Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:34:33Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:34:33Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:34:33Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:34:33Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:34:33Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:34:33Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:34:33Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:34:33Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:34:33Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:34:3300:34:33pre-compile:
00:34:33Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:34:33Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:34:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:34:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:34:34Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:34:3400:34:34compile:
00:34:34no-op
00:34:3400:34:34package:
00:34:34Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:34:3400:34:34install:
00:34:34:: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-574-085846c6ed-ice36-b496 :: integration :: Sat Aug 16 00:34:21 UTC 2025
00:34:34 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:34:34:: publishing :: omero#omero_client
00:34:34 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-085846c6ed-ice36-b496/omero_client-5.6.3-574-085846c6ed-ice36-b496.jar
00:34:34 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-085846c6ed-ice36-b496/omero_client-5.6.3-574-085846c6ed-ice36-b496.xml
00:34:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:34:35Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:34:3500:34:35retrieve:
00:34:35:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:34:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:34:35Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:34:3500:34:35dist:
00:34:35Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:34:35Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:34:35Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:34:35Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:34:35Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:34:35Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:34:35Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:34:35Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:34:35Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:34:3500:34:35copy-licenses:
00:34:35Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:34:35Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:34:36Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:34:3600:34:36copy-history:
00:34:36Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:34:3600:34:36copy-etc:
00:34:36Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:34:36Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:34:3600:34:36copy-sql:
00:34:36Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:34:4000:34:40copy-server:
00:34:40 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:34:4000:34:40copy-client:
00:34:40Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:34:41 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:34:4100:34:41update-version:
00:34:41Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:34:4100:34:41create-workdirs:
00:34:41Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:34:41Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:34:4100:34:41copy-luts:
00:34:41Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:34:41Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:34:4100:34:41test-compile:
00:34:41:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:34:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:34:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:34:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:34:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:34:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:34:41Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:34:41Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:34:4200:34:42testng-init:
00:34:42:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:34:42:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:34:4800:34:48,224 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
00:34:4800:34:48,227 |-INFO in ch.qos.logback.classic.util.ContextInitializer@337d97e3 - No custom configurators were discovered as a service.
00:34:4800:34:48,227 |-INFO in ch.qos.logback.classic.util.ContextInitializer@337d97e3 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:34:4800:34:48,230 |-INFO in ch.qos.logback.classic.util.ContextInitializer@337d97e3 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:34:4800:34:48,231 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:34:4800:34:48,231 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:34:4800:34:48,232 |-INFO in ch.qos.logback.classic.util.ContextInitializer@337d97e3 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:34:4800:34:48,232 |-INFO in ch.qos.logback.classic.util.ContextInitializer@337d97e3 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:34:4800:34:48,233 |-INFO in ch.qos.logback.classic.util.ContextInitializer@337d97e3 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:34:4800:34:48,234 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:34:4800:34:48,234 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:34:4800:34:48,235 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@502aa66a - Resource [logback.xml] occurs multiple times on the classpath.
00:34:4800:34:48,235 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@502aa66a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:34:4800:34:48,235 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@502aa66a - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:34:4800:34:48,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:34:4800:34:48,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:34:4800:34:48,455 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:34:4800:34:48,457 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5a06fcfc - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:34:4800:34:48,457 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5a06fcfc - Please move "immediateFlush" property into the enclosing appender.
00:34:4800:34:48,517 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5a06fcfc - Setting the "immediateFlush" property of the enclosing appender to true
00:34:4800:34:48,518 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:34:4800:34:48,518 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:34:4800:34:48,518 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:34:4800:34:48,518 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:34:4800:34:48,518 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:34:4800:34:48,519 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:34:4800:34:48,520 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4c9a3ae - End of configuration.
00:34:4800:34:48,522 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5b54fe5b - Registering current configuration as safe fallback point
00:34:4800:34:48,522 |-INFO in ch.qos.logback.classic.util.ContextInitializer@337d97e3 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 289 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:34:4800:34:48lifecycle.test-compile:
00:34:48Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:34:48Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:34:48warning: [options] bootstrap class path not set in conjunction with -source 8
00:34:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:34:50import omero.grid.RawAccessRequest;
00:34:50 ^
00:34:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:34:50import omero.grid.RawAccessRequest;
00:34:50 ^
00:34:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:34:50import omero.grid.RawAccessRequest;
00:34:50 ^
00:34:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:34:50import omero.model.ImportJob;
00:34:50 ^
00:34:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:34:50import omero.model.ImportJobI;
00:34:50 ^
00:34:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:34:50 IObject link = (IObject) linkClass.newInstance();
00:34:50 ^
00:34:50 where T is a type-variable:
00:34:50 T extends Object declared in class Class
00:34:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:34:51 T copy = (T) obj.getClass().newInstance();
00:34:51 ^
00:34:51 where T is a type-variable:
00:34:51 T extends Object declared in class Class
00:34:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:34:51 RawAccessRequest raw = new RawAccessRequest();
00:34:51 ^
00:34:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:34:51 RawAccessRequest raw = new RawAccessRequest();
00:34:51 ^
00:34:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:34:51 raw.repoUuid = legacy.root().getHash().getValue();
00:34:51 ^
00:34:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:34:51 raw.command = "rm";
00:34:51 ^
00:34:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:34:51 raw.args = Arrays.asList(path);
00:34:51 ^
00:34:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:34:51 final IObject link = linkClass.newInstance();
00:34:51 ^
00:34:51 where T is a type-variable:
00:34:51 T extends Object declared in class Class
00:34:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:34:51 originalLink.setChild(annotationClass.newInstance());
00:34:51 ^
00:34:51 where T is a type-variable:
00:34:51 T extends Object declared in class Class
00:34:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:34:51 RoiResult r = svc.findByImage(id, new RoiOptions());
00:34:51 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:34:52 final RawAccessRequest request = new RawAccessRequest();
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:34:52 final RawAccessRequest request = new RawAccessRequest();
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:34:52 request.repoUuid = repo.root().getHash().getValue();
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:34:52 request.command = "exists";
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:34:52 request.args = Collections.singletonList(dirPath);
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:34:52 final RawAccessRequest request = new RawAccessRequest();
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:34:52 final RawAccessRequest request = new RawAccessRequest();
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:34:52 request.repoUuid = repo.root().getHash().getValue();
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:34:52 request.command = "exists";
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:34:52 request.args = Collections.singletonList(dirName);
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:34:52 final ImportJob importJob = new ImportJobI();
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:34:52 final ImportJob importJob = new ImportJobI();
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:34:52 importJob.setImageName(omero.rtypes.rstring(name));
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:34:52 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:34:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:34:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:34:52 final String savedName = sent.getImageName().getValue().toString();
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:34:52 final String savedDesc = sent.getImageDescription().getValue().toString();
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:34:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:34:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:34:52 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:34:52 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:34:52 RoiResult r = svc.findByImage(image.getId().getValue(),
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:34:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:34:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:34:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:34:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:34:52 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:34:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:34:52 table = svc.getTable(f.getId().getValue());
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:34:52 RoiResult r = svc.findByImage(image.getId().getValue(),
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:34:52 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:34:52 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:34:52 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:34:52 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:34:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:34:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:34:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:34:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:34:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:34:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:34:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:34:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:34:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:34:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:34:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:34:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:34:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:34:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:34:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:34:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:34:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:34:52 svc.getShapeStatsRestricted(
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:34:52 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:34:52 ^
00:34:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:34:52 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:34:52 ^
00:34:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:34:53 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:34:53 ^
00:34:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:34:53 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:34:53 ^
00:34:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:34:53 request.typesToIgnore = Collections.singletonList("Annotation");
00:34:53 ^
00:34:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:34:53 request.typesToIgnore = Collections.singletonList("Annotation");
00:34:53 ^
00:34:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:34:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:34:53 ^
00:34:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:34:53 p2.setRelatedTo(p1);
00:34:53 ^
00:34:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:34:53 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:34:53 ^
00:34:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:34:53 pixels1.setRelatedTo(pixels2);
00:34:53 ^
00:34:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:34:53 Pixels pixels = pixels1.getRelatedTo();
00:34:53 ^
00:34:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:34:53 Assert.assertNull(pixels1.getRelatedTo());
00:34:53 ^
00:34:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:34:53 pixels1.setRelatedTo(pixels2);
00:34:53 ^
00:34:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:34:53 Pixels pixels = pixels1.getRelatedTo();
00:34:53 ^
00:34:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:34:53 Assert.assertNull(pixels1.getRelatedTo());
00:34:53 ^
00:34:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:34:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:34:53 ^
00:34:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:34:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:34:53 ^
00:34:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:34:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:34:53 ^
00:34:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:34:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:34:53 ^
00:34:53Note: Some input files use unchecked or unsafe operations.
00:34:53Note: Recompile with -Xlint:unchecked for details.
00:34:5388 warnings
00:34:53Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1474128860.tmp
00:34:53Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:34:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:34:53:: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-574-085846c6ed-ice36-b496 :: integration :: Sat Aug 16 00:34:41 UTC 2025
00:34:53 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:34:53:: publishing :: omero#OmeroJava-test
00:34:53 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-085846c6ed-ice36-b496.jar
00:34:53 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-085846c6ed-ice36-b496.xml
00:34:5300:34:53build-eclipse:
00:34:53No sub-builds to iterate on
00:34:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:34:5300:34:53retrieve:
00:34:53:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:34:53:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:34:5500:34:55prepare:
00:34:55Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:34:5700:34:57release-clients:
00:34:57Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-574-085846c6ed-ice36-b496.zip
00:35:0300:35:03release-zip:
00:35:03Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-574-085846c6ed-ice36-b496.zip
00:35:1400:35:14BUILD SUCCESSFUL
00:35:14Total time: 56 seconds
00:35:14++ '[' -d .git ']'
00:35:14++ python3 ./build.py release-src
00:35:15Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:35:1500:35:15release-src-git:
00:35:15Releasing openmicroscopy-5.6.3-574-085846c6ed-ice36-b496
00:35:16 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-085846c6ed-ice36-b496.zip
00:35:16 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-085846c6ed-ice36-b496-base.zip
00:35:1800:35:18BUILD SUCCESSFUL
00:35:18Total time: 3 seconds
00:35:18++ echo BUILD_NUMBER=496
00:35:18++ echo OMERO_BRANCH=merge_ci
00:35:18++ git_info
00:35:18+++ git rev-parse HEAD
00:35:18++ HEAD=085846c6ed6cc9e67ae861781eab5f3879b23329
00:35:18++ git log --max-count=1 085846c6ed6cc9e67ae861781eab5f3879b23329
00:35:18++ env
00:35:18++ sort
00:35:18Archiving artifacts
00:35:42Finished: SUCCESS
![[Jenkins]](/jenkins/static/9bac06d9/images/svgs/logo.svg){kind=logo}
