00:34:39Started by upstream project "Trigger" build number 59000:34:39originally caused by:
00:34:39 Started by timer
00:34:39Running as SYSTEM
00:34:39Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:34:40The recommended git tool is: NONE
00:34:40No credentials specified
00:34:40 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:34:40Fetching changes from the remote Git repository
00:34:40 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:34:40Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:34:40 > git --version # timeout=10
00:34:40 > git --version # 'git version 2.43.5'
00:34:40 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:34:40 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:34:40Checking out Revision 57becf5961c06f7c7af63fd7be9f119919aa3fd3 (origin/merge_ci)
00:34:40 > git config core.sparsecheckout # timeout=10
00:34:40 > git checkout -f 57becf5961c06f7c7af63fd7be9f119919aa3fd3 # timeout=10
00:34:40Commit message: "Add version.properties to etc/omero.properties"
00:34:40 > git rev-list --no-walk 6a92548e4d6773077bdac6b7ada680ffaf505041 # timeout=10
00:34:40Cleaning workspace
00:34:40 > git rev-parse --verify HEAD # timeout=10
00:34:40Resetting working tree
00:34:40 > git reset --hard # timeout=10
00:34:40 > git clean -fdx # timeout=10
00:34:40Copied 6 artifacts from "OMERO-python-superbuild-build" build number 49100:34:40[OMERO-build] $ /bin/bash -xe /tmp/jenkins18334557595296666546.sh
00:34:40+ mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz .
00:34:40+ cd src
00:34:40+ export OMERO_BRANCH=merge_ci
00:34:40+ OMERO_BRANCH=merge_ci
00:34:40+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:34:40+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
00:34:41+ source /home/omero/settings.env
00:34:41++ OMERO_DB_HOST=pg
00:34:41++ OMERO_DB_USER=postgres
00:34:41++ OMERO_DB_PASS=
00:34:41++ OMERO_ROOT_PASS=omero
00:34:41++ OMERO_DATA_DIR=/OMERO
00:34:41++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:34:41+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:34:44+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl00:34:45Collecting zeroc-ice==3.6.5
00:34:45 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:34:48 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 7.7 MB/s eta 0:00:00
00:34:48Installing collected packages: zeroc-ice
00:34:49Successfully installed zeroc-ice-3.6.5
00:34:4900:34:49[notice] A new release of pip available: 22.3.1 -> 25.2
00:34:49[notice] To update, run: python3.11 -m pip install --upgrade pip
00:34:49+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
00:34:49Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
00:34:49Collecting setuptools<66
00:34:49 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
00:34:49Collecting omero-py
00:34:50 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB)
00:34:50Collecting urllib3<2
00:34:50 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:34:50Collecting appdirs
00:34:50 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:34:50Collecting future
00:34:50 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:34:50Collecting numpy<3
00:34:50 Using cached numpy-2.3.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:34:51Collecting Pillow>=10.0.0
00:34:51 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB)
00:34:51Collecting PyYAML
00:34:51 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
00:34:51Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:34:51Collecting requests
00:34:51 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
00:34:51Collecting portalocker
00:34:51 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:34:51Collecting charset_normalizer<4,>=2
00:34:51 Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB)
00:34:51Collecting idna<4,>=2.5
00:34:51 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:34:51Collecting certifi>=2017.4.17
00:34:51 Using cached certifi-2025.8.3-py3-none-any.whl (161 kB)
00:34:51Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
00:34:52 Attempting uninstall: setuptools
00:34:52 Found existing installation: setuptools 65.5.1
00:34:52 Uninstalling setuptools-65.5.1:
00:34:52 Successfully uninstalled setuptools-65.5.1
00:34:57Successfully installed Pillow-11.3.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.8.3 charset_normalizer-3.4.3 future-1.0.0 idna-3.10 numpy-2.3.2 omero-py-5.21.0 portalocker-3.2.0 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20
00:34:5700:34:57[notice] A new release of pip available: 22.3.1 -> 25.2
00:34:57[notice] To update, run: python3.11 -m pip install --upgrade pip
00:34:57+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
00:34:57++ deactivate nondestructive
00:34:57++ '[' -n '' ']'
00:34:57++ '[' -n '' ']'
00:34:57++ hash -r
00:34:57++ '[' -n '' ']'
00:34:57++ unset VIRTUAL_ENV
00:34:57++ unset VIRTUAL_ENV_PROMPT
00:34:57++ '[' '!' nondestructive = nondestructive ']'
00:34:57++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
00:34:57++ export VIRTUAL_ENV
00:34:57++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:34:57++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:34:57++ export PATH
00:34:57++ '[' -n '' ']'
00:34:57++ '[' -z '' ']'
00:34:57++ _OLD_VIRTUAL_PS1=
00:34:57++ PS1='(omero-virtualenv) '
00:34:57++ export PS1
00:34:57++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
00:34:57++ export VIRTUAL_ENV_PROMPT
00:34:57++ hash -r
00:34:57+ source docs/hudson/OMERO.sh
00:34:57++ set -e
00:34:57++ set -u
00:34:57++ set -x
00:34:57++ source docs/hudson/functions.sh
00:34:57++ echo Building merge_ci
00:34:57Building merge_ci
00:34:57++ python3 ./build.py build-dev release-all
00:34:57Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:34:5800:34:58check-ivy:
00:34:58Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:34:58Created dir: /home/omero/workspace/OMERO-build/src/target
00:34:58:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:34:58:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:34:5900:34:59build-scons:
00:34:59Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:34:59No sub-builds to iterate on
00:34:59Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:34:5900:34:59buildlist:
00:34:59:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:34:59:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:34:5900:34:59clean:
00:34:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:34:59Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:0000:35:00python-clean:
00:35:00WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:00/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-57becf5961-ice36-b498') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:00 warnings.warn(
00:35:00running clean
00:35:00Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:35:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:35:0000:35:00python-clean:
00:35:00WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:00/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-57becf5961-ice36-b498') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:00 warnings.warn(
00:35:00running clean
00:35:00Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:35:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:35:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:00Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:0000:35:00python-clean:
00:35:00WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:35:00/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-57becf5961-ice36-b498') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:35:00 warnings.warn(
00:35:00running clean
00:35:00Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:35:00Deleting directory /home/omero/workspace/OMERO-build/src/target
00:35:0000:35:00build-scons:
00:35:00Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:35:0100:35:01build:
00:35:01No sub-builds to iterate on
00:35:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:35:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:35:0100:35:01tools-init:
00:35:01no-op
00:35:0100:35:01retrieve:
00:35:01:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:01WARNING: An illegal reflective access operation has occurred
00:35:01WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
00:35:01WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
00:35:01WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
00:35:01WARNING: All illegal access operations will be denied in a future release
00:35:2900:35:29prepare:
00:35:29Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:35:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:35:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:35:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:35:29Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:35:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:35:29Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:35:2900:35:29pre-compile:
00:35:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:29Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:30Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:35:3000:35:30compile:
00:35:30no-op
00:35:3000:35:30package:
00:35:30Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:35:3000:35:30install:
00:35:30:: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-574-57becf5961-ice36-b498 :: integration :: Mon Aug 18 00:35:01 UTC 2025
00:35:30 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:35:30:: publishing :: omero#omero_client
00:35:30 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-57becf5961-ice36-b498/omero_client-5.6.3-574-57becf5961-ice36-b498.jar
00:35:30 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-57becf5961-ice36-b498/omero_client-5.6.3-574-57becf5961-ice36-b498.xml
00:35:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:30Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:3100:35:31retrieve:
00:35:31:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:31:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:31Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:35:3100:35:31dist:
00:35:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:35:31Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:35:31Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:35:31Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:35:31Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:35:31Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
00:35:31Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:35:31Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:35:31Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:35:3100:35:31copy-licenses:
00:35:31Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:35:31Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:35:31Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:35:3100:35:31copy-history:
00:35:31Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:35:3100:35:31copy-etc:
00:35:31Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:35:31Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:35:3100:35:31copy-sql:
00:35:31Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:35:3500:35:35copy-server:
00:35:35 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
00:35:3600:35:36copy-client:
00:35:36Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:35:37 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
00:35:3700:35:37update-version:
00:35:37Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:35:3700:35:37create-workdirs:
00:35:37Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:35:37Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:35:3700:35:37copy-luts:
00:35:37Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:35:37Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:35:3700:35:37test-compile:
00:35:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:35:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:35:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:35:37Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:35:37Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:35:3700:35:37testng-init:
00:35:37:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:4000:35:40,336 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
00:35:4000:35:40,339 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3eebbbf5 - No custom configurators were discovered as a service.
00:35:4000:35:40,339 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3eebbbf5 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:35:4000:35:40,342 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3eebbbf5 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:35:4000:35:40,342 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:35:4000:35:40,343 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:35:4000:35:40,343 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3eebbbf5 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:35:4000:35:40,343 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3eebbbf5 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:35:4000:35:40,345 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3eebbbf5 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:35:4000:35:40,345 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:35:4000:35:40,346 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:35:4000:35:40,346 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@451cef5 - Resource [logback.xml] occurs multiple times on the classpath.
00:35:4000:35:40,346 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@451cef5 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:35:4000:35:40,346 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@451cef5 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:35:4000:35:40,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:35:4000:35:40,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:35:4000:35:40,560 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:35:4000:35:40,562 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@21ffedc7 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:35:4000:35:40,562 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@21ffedc7 - Please move "immediateFlush" property into the enclosing appender.
00:35:4000:35:40,623 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@21ffedc7 - Setting the "immediateFlush" property of the enclosing appender to true
00:35:4000:35:40,624 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:35:4000:35:40,624 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:35:4000:35:40,624 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:35:4000:35:40,624 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:35:4000:35:40,624 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:35:4000:35:40,624 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:35:4000:35:40,625 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@337d97e3 - End of configuration.
00:35:4000:35:40,627 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@502aa66a - Registering current configuration as safe fallback point
00:35:4000:35:40,627 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3eebbbf5 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 282 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:35:4000:35:40lifecycle.test-compile:
00:35:40Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:35:40Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:35:41warning: [options] bootstrap class path not set in conjunction with -source 8
00:35:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:42import omero.grid.RawAccessRequest;
00:35:42 ^
00:35:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:42import omero.grid.RawAccessRequest;
00:35:42 ^
00:35:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:42import omero.grid.RawAccessRequest;
00:35:42 ^
00:35:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:35:42import omero.model.ImportJob;
00:35:42 ^
00:35:42/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:35:42import omero.model.ImportJobI;
00:35:42 ^
00:35:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:35:43 IObject link = (IObject) linkClass.newInstance();
00:35:43 ^
00:35:43 where T is a type-variable:
00:35:43 T extends Object declared in class Class
00:35:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:35:43 T copy = (T) obj.getClass().newInstance();
00:35:43 ^
00:35:43 where T is a type-variable:
00:35:43 T extends Object declared in class Class
00:35:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:43 RawAccessRequest raw = new RawAccessRequest();
00:35:43 ^
00:35:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:43 RawAccessRequest raw = new RawAccessRequest();
00:35:43 ^
00:35:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:35:43 raw.repoUuid = legacy.root().getHash().getValue();
00:35:43 ^
00:35:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:35:43 raw.command = "rm";
00:35:43 ^
00:35:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:35:43 raw.args = Arrays.asList(path);
00:35:43 ^
00:35:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:35:43 final IObject link = linkClass.newInstance();
00:35:43 ^
00:35:43 where T is a type-variable:
00:35:43 T extends Object declared in class Class
00:35:43/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:35:43 originalLink.setChild(annotationClass.newInstance());
00:35:43 ^
00:35:43 where T is a type-variable:
00:35:43 T extends Object declared in class Class
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:35:44 RoiResult r = svc.findByImage(id, new RoiOptions());
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:44 final RawAccessRequest request = new RawAccessRequest();
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:44 final RawAccessRequest request = new RawAccessRequest();
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:35:44 request.repoUuid = repo.root().getHash().getValue();
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:35:44 request.command = "exists";
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:35:44 request.args = Collections.singletonList(dirPath);
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:44 final RawAccessRequest request = new RawAccessRequest();
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:35:44 final RawAccessRequest request = new RawAccessRequest();
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:35:44 request.repoUuid = repo.root().getHash().getValue();
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:35:44 request.command = "exists";
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:35:44 request.args = Collections.singletonList(dirName);
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:35:44 final ImportJob importJob = new ImportJobI();
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:35:44 final ImportJob importJob = new ImportJobI();
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:35:44 importJob.setImageName(omero.rtypes.rstring(name));
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:35:44 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:35:44 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:35:44 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:35:44 final String savedName = sent.getImageName().getValue().toString();
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:35:44 final String savedDesc = sent.getImageDescription().getValue().toString();
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:35:44 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:35:44 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:35:44 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:35:44 ^
00:35:44/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:35:44 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:35:44 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:35:45 RoiResult r = svc.findByImage(image.getId().getValue(),
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:45 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:45 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:45 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:45 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:35:45 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:45 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:35:45 table = svc.getTable(f.getId().getValue());
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:35:45 RoiResult r = svc.findByImage(image.getId().getValue(),
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:35:45 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:35:45 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:35:45 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:35:45 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:35:45 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:35:45 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:35:45 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:35:45 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:35:45 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:35:45 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:35:45 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:35:45 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:35:45 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:35:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:35:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:35:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:35:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:35:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:35:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:35:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:35:45 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:35:45 svc.getShapeStatsRestricted(
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:35:45 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:35:45 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:35:45 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:35:45 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:35:45 request.typesToIgnore = Collections.singletonList("Annotation");
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:35:45 request.typesToIgnore = Collections.singletonList("Annotation");
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:35:45 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:35:45 p2.setRelatedTo(p1);
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:35:45 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:35:45 pixels1.setRelatedTo(pixels2);
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:35:45 Pixels pixels = pixels1.getRelatedTo();
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:35:45 Assert.assertNull(pixels1.getRelatedTo());
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:35:45 pixels1.setRelatedTo(pixels2);
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:35:45 Pixels pixels = pixels1.getRelatedTo();
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:35:45 Assert.assertNull(pixels1.getRelatedTo());
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:45 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:45 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:45 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:35:45 ^
00:35:45/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:35:45 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:35:45 ^
00:35:45Note: Some input files use unchecked or unsafe operations.
00:35:45Note: Recompile with -Xlint:unchecked for details.
00:35:4588 warnings
00:35:45Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_611936413.tmp
00:35:45Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:35:45:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:45:: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-574-57becf5961-ice36-b498 :: integration :: Mon Aug 18 00:35:37 UTC 2025
00:35:45 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:35:45:: publishing :: omero#OmeroJava-test
00:35:45 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-57becf5961-ice36-b498.jar
00:35:45 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-57becf5961-ice36-b498.xml
00:35:4500:35:45build-eclipse:
00:35:45No sub-builds to iterate on
00:35:45Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:35:4600:35:46retrieve:
00:35:46:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
00:35:46:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:35:4800:35:48prepare:
00:35:48Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:35:4900:35:49release-clients:
00:35:49Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-574-57becf5961-ice36-b498.zip
00:35:5400:35:54release-zip:
00:35:54Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-574-57becf5961-ice36-b498.zip
00:36:0500:36:05BUILD SUCCESSFUL
00:36:05Total time: 1 minute 8 seconds
00:36:05++ '[' -d .git ']'
00:36:05++ python3 ./build.py release-src
00:36:06Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:36:0600:36:06release-src-git:
00:36:06Releasing openmicroscopy-5.6.3-574-57becf5961-ice36-b498
00:36:08 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-57becf5961-ice36-b498.zip
00:36:08 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-57becf5961-ice36-b498-base.zip
00:36:0900:36:09BUILD SUCCESSFUL
00:36:09Total time: 3 seconds
00:36:09++ echo BUILD_NUMBER=498
00:36:09++ echo OMERO_BRANCH=merge_ci
00:36:09++ git_info
00:36:09+++ git rev-parse HEAD
00:36:09++ HEAD=57becf5961c06f7c7af63fd7be9f119919aa3fd3
00:36:09++ git log --max-count=1 57becf5961c06f7c7af63fd7be9f119919aa3fd3
00:36:09++ env
00:36:09++ sort
00:36:09Archiving artifacts
00:36:33Finished: SUCCESS
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